2D1KB

Ternary complex of the wh2 domain of mim with actin-dnase i
Total Genus 81
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
260
structure length
260
Chain Sequence
LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural protein
molecule keywords Actin, alpha skeletal muscle
publication title Structural basis for the actin-binding function of missing-in-metastasis
pubmed doi rcsb
total genus 81
structure length 260
sequence length 260
ec nomenclature ec 3.1.21.1: Deoxyribonuclease I.
pdb deposition date 2005-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 2d1kB00
1SR4B 4FPVA 1I9ZA 5EWTA 4B5FA 2VOAA 3G4TA 4GZ0A 2XSWA 3MTCA 5J42A 3NGNA 1HD7A 4CMLA 4QHDA 3NGQA 5J3ZA 3WCXA 3W2YA 4JG3A 4PUQA 3G0RA 3G00A 3I5VA 3I48A 3G2CA 3I46A 1WDUA 5HT2A 3W3DB 4F1HA 5DV2A 4L1YA 3MPRA 2JC4A 2UYRX 3TEBA 4CMNA 1SI6X 5INPA 4C1RA 4GZ2A 5DV4A 3L1WA 4B5HA 3W2XA 2A40B 1Y21A 5DFFA 1DNKA 4GYZA 3K55A 4L1ZA 2ISIA 5A7IA 5DG0A 4F1IA 2F2FB 1I9YA 4B5IA 4B5MA 1DE9A 4AWNA 1E9NA 5J3SA 5A7JA 3G38A 3GA6A 4K6LF 3NR8A 5CFGA 4F1RA 5INKA 2D1KB 2V0SA 5INNA 5J8NA 3FZIA 1ATND 2O3HA 2A42B 2J63A 5DFJA 2DDSA 3G2DA 4RUWA 5DFHA 5INMA 1NTFA 5DFIA 3NGOA 3I41A 2A3ZB 3G6SA 2A41B 5J3PA 5CFEA 4LNDA 5INLA 3G91A 2O3CA 4A9CA 3U8UA 4IEMA 1DE8A 4L20A 5INQA 3DNIA 3N9VA 2F1NA 4B5GA 1YJHA 4F1HB 5INOA 2DDRA 4GZ1A 1DEWA 2DNJA 2DDTA 4QH9A 4QHEA 1VYBA 1BIXA 2V0RA 1ZWXA 3G3CA 3G3YA 3G8VA 1AKOA 3CJCD 3G1KA 4B5JA 2IMQX 2JC5A 4L21A 2EI9A 3G0AA 4FVAA 4GEWA
chains in the Genus database with same CATH superfamily
1SR4B 4FPVA 1I9ZA 5EWTA 4B5FA 2VOAA 3G4TA 4GZ0A 2XSWA 3MTCA 5J42A 3NGNA 1HD7A 4CMLA 4QHDA 3NGQA 5J3ZA 3WCXA 3W2YA 4JG3A 4PUQA 3G0RA 3G00A 3I5VA 3I48A 3G2CA 3I46A 1WDUA 5HT2A 3W3DB 4F1HA 5DV2A 4L1YA 3MPRA 2JC4A 2UYRX 3TEBA 4CMNA 1SI6X 5INPA 4C1RA 4GZ2A 5DV4A 3L1WA 4B5HA 3W2XA 2A40B 1Y21A 5DFFA 1DNKA 4GYZA 3K55A 4L1ZA 2ISIA 5A7IA 5DG0A 4F1IA 2F2FB 1I9YA 4B5IA 4B5MA 1DE9A 4AWNA 1E9NA 5J3SA 5A7JA 3G38A 3GA6A 4K6LF 3NR8A 5CFGA 4F1RA 5INKA 2D1KB 2V0SA 5INNA 5J8NA 3FZIA 1ATND 2O3HA 2A42B 2J63A 5DFJA 2DDSA 3G2DA 4RUWA 5DFHA 5INMA 1NTFA 5DFIA 3NGOA 3I41A 2A3ZB 3G6SA 2A41B 5J3PA 5CFEA 4LNDA 5INLA 3G91A 2O3CA 4A9CA 3U8UA 4IEMA 1DE8A 4L20A 5INQA 3DNIA 3N9VA 2F1NA 4B5GA 1YJHA 4F1HB 5INOA 2DDRA 4GZ1A 1DEWA 2DNJA 2DDTA 4QH9A 4QHEA 1VYBA 1BIXA 2V0RA 1ZWXA 3G3CA 3G3YA 3G8VA 1AKOA 3CJCD 3G1KA 4B5JA 2IMQX 2JC5A 4L21A 2EI9A 3G0AA 4FVAA 4GEWA
chains in the Genus database with same CATH topology
1SR4B 4FPVA 1I9ZA 5EWTA 4B5FA 2VOAA 3G4TA 4GZ0A 2XSWA 3MTCA 5J42A 3NGNA 1HD7A 4CMLA 4QHDA 3NGQA 5J3ZA 3WCXA 3W2YA 4JG3A 4PUQA 3G0RA 3G00A 3I5VA 3I48A 3G2CA 3I46A 1WDUA 5HT2A 3W3DB 4F1HA 5DV2A 4L1YA 3MPRA 2JC4A 2UYRX 3TEBA 4CMNA 1SI6X 5INPA 4C1RA 4GZ2A 5DV4A 3L1WA 4B5HA 3W2XA 2A40B 1Y21A 5DFFA 1DNKA 4GYZA 3K55A 4L1ZA 2ISIA 5A7IA 5DG0A 4F1IA 2F2FB 1I9YA 4B5IA 4B5MA 1DE9A 4AWNA 1E9NA 5J3SA 5A7JA 3G38A 3GA6A 4K6LF 3NR8A 5CFGA 4F1RA 5INKA 2D1KB 2V0SA 5INNA 5J8NA 3FZIA 1ATND 2O3HA 2A42B 2J63A 5DFJA 2DDSA 3G2DA 4RUWA 5DFHA 5INMA 1NTFA 5DFIA 3NGOA 3I41A 2A3ZB 3G6SA 2A41B 5J3PA 5CFEA 4LNDA 5INLA 3G91A 2O3CA 4A9CA 3U8UA 4IEMA 1DE8A 4L20A 5INQA 3DNIA 3N9VA 2F1NA 4B5GA 1YJHA 4F1HB 5INOA 2DDRA 4GZ1A 1DEWA 2DNJA 2DDTA 4QH9A 4QHEA 1VYBA 1BIXA 2V0RA 1ZWXA 3G3CA 3G3YA 3G8VA 1AKOA 3CJCD 3G1KA 4B5JA 2IMQX 2JC5A 4L21A 2EI9A 3G0AA 4FVAA 4GEWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SR4 B;  4FPV A;  1I9Z A;  5EWT A;  4B5F A;  2VOA A;  3G4T A;  4GZ0 A;  2XSW A;  3MTC A;  5J42 A;  3NGN A;  1HD7 A;  4CML A;  4QHD A;  3NGQ A;  5J3Z A;  3WCX A;  3W2Y A;  4JG3 A;  4PUQ A;  3G0R A;  3G00 A;  3I5V A;  3I48 A;  3G2C A;  3I46 A;  1WDU A;  5HT2 A;  3W3D B;  4F1H A;  5DV2 A;  4L1Y A;  3MPR A;  2JC4 A;  2UYR X;  3TEB A;  4CMN A;  1SI6 X;  5INP A;  4C1R A;  4GZ2 A;  5DV4 A;  3L1W A;  4B5H A;  3W2X A;  2A40 B;  1Y21 A;  5DFF A;  1DNK A;  4GYZ A;  3K55 A;  4L1Z A;  2ISI A;  5A7I A;  5DG0 A;  4F1I A;  2F2F B;  1I9Y A;  4B5I A;  4B5M A;  1DE9 A;  4AWN A;  1E9N A;  5J3S A;  5A7J A;  3G38 A;  3GA6 A;  4K6L F;  3NR8 A;  5CFG A;  4F1R A;  5INK A;  2D1K B;  2V0S A;  5INN A;  5J8N A;  3FZI A;  1ATN D;  2O3H A;  2A42 B;  2J63 A;  5DFJ A;  2DDS A;  3G2D A;  4RUW A;  5DFH A;  5INM A;  1NTF A;  5DFI A;  3NGO A;  3I41 A;  2A3Z B;  3G6S A;  2A41 B;  5J3P A;  5CFE A;  4LND A;  5INL A;  3G91 A;  2O3C A;  4A9C A;  3U8U A;  4IEM A;  1DE8 A;  4L20 A;  5INQ A;  3DNI A;  3N9V A;  2F1N A;  4B5G A;  1YJH A;  4F1H B;  5INO A;  2DDR A;  4GZ1 A;  1DEW A;  2DNJ A;  2DDT A;  4QH9 A;  4QHE A;  1VYB A;  1BIX A;  2V0R A;  1ZWX A;  3G3C A;  3G3Y A;  3G8V A;  1AKO A;  3CJC D;  3G1K A;  4B5J A;  2IMQ X;  2JC5 A;  4L21 A;  2EI9 A;  3G0A A;  4FVA A;  4GEW A; 
#chains in the Genus database with same CATH topology
 1SR4 B;  4FPV A;  1I9Z A;  5EWT A;  4B5F A;  2VOA A;  3G4T A;  4GZ0 A;  2XSW A;  3MTC A;  5J42 A;  3NGN A;  1HD7 A;  4CML A;  4QHD A;  3NGQ A;  5J3Z A;  3WCX A;  3W2Y A;  4JG3 A;  4PUQ A;  3G0R A;  3G00 A;  3I5V A;  3I48 A;  3G2C A;  3I46 A;  1WDU A;  5HT2 A;  3W3D B;  4F1H A;  5DV2 A;  4L1Y A;  3MPR A;  2JC4 A;  2UYR X;  3TEB A;  4CMN A;  1SI6 X;  5INP A;  4C1R A;  4GZ2 A;  5DV4 A;  3L1W A;  4B5H A;  3W2X A;  2A40 B;  1Y21 A;  5DFF A;  1DNK A;  4GYZ A;  3K55 A;  4L1Z A;  2ISI A;  5A7I A;  5DG0 A;  4F1I A;  2F2F B;  1I9Y A;  4B5I A;  4B5M A;  1DE9 A;  4AWN A;  1E9N A;  5J3S A;  5A7J A;  3G38 A;  3GA6 A;  4K6L F;  3NR8 A;  5CFG A;  4F1R A;  5INK A;  2D1K B;  2V0S A;  5INN A;  5J8N A;  3FZI A;  1ATN D;  2O3H A;  2A42 B;  2J63 A;  5DFJ A;  2DDS A;  3G2D A;  4RUW A;  5DFH A;  5INM A;  1NTF A;  5DFI A;  3NGO A;  3I41 A;  2A3Z B;  3G6S A;  2A41 B;  5J3P A;  5CFE A;  4LND A;  5INL A;  3G91 A;  2O3C A;  4A9C A;  3U8U A;  4IEM A;  1DE8 A;  4L20 A;  5INQ A;  3DNI A;  3N9V A;  2F1N A;  4B5G A;  1YJH A;  4F1H B;  5INO A;  2DDR A;  4GZ1 A;  1DEW A;  2DNJ A;  2DDT A;  4QH9 A;  4QHE A;  1VYB A;  1BIX A;  2V0R A;  1ZWX A;  3G3C A;  3G3Y A;  3G8V A;  1AKO A;  3CJC D;  3G1K A;  4B5J A;  2IMQ X;  2JC5 A;  4L21 A;  2EI9 A;  3G0A A;  4FVA A;  4GEW A; 
#chains in the Genus database with same CATH homology
 1SR4 B;  4FPV A;  1I9Z A;  5EWT A;  4B5F A;  2VOA A;  3G4T A;  4GZ0 A;  2XSW A;  3MTC A;  5J42 A;  3NGN A;  1HD7 A;  4CML A;  4QHD A;  3NGQ A;  5J3Z A;  3WCX A;  3W2Y A;  4JG3 A;  4PUQ A;  3G0R A;  3G00 A;  3I5V A;  3I48 A;  3G2C A;  3I46 A;  1WDU A;  5HT2 A;  3W3D B;  4F1H A;  5DV2 A;  4L1Y A;  3MPR A;  2JC4 A;  2UYR X;  3TEB A;  4CMN A;  1SI6 X;  5INP A;  4C1R A;  4GZ2 A;  5DV4 A;  3L1W A;  4B5H A;  3W2X A;  2A40 B;  1Y21 A;  5DFF A;  1DNK A;  4GYZ A;  3K55 A;  4L1Z A;  2ISI A;  5A7I A;  5DG0 A;  4F1I A;  2F2F B;  1I9Y A;  4B5I A;  4B5M A;  1DE9 A;  4AWN A;  1E9N A;  5J3S A;  5A7J A;  3G38 A;  3GA6 A;  4K6L F;  3NR8 A;  5CFG A;  4F1R A;  5INK A;  2D1K B;  2V0S A;  5INN A;  5J8N A;  3FZI A;  1ATN D;  2O3H A;  2A42 B;  2J63 A;  5DFJ A;  2DDS A;  3G2D A;  4RUW A;  5DFH A;  5INM A;  1NTF A;  5DFI A;  3NGO A;  3I41 A;  2A3Z B;  3G6S A;  2A41 B;  5J3P A;  5CFE A;  4LND A;  5INL A;  3G91 A;  2O3C A;  4A9C A;  3U8U A;  4IEM A;  1DE8 A;  4L20 A;  5INQ A;  3DNI A;  3N9V A;  2F1N A;  4B5G A;  1YJH A;  4F1H B;  5INO A;  2DDR A;  4GZ1 A;  1DEW A;  2DNJ A;  2DDT A;  4QH9 A;  4QHE A;  1VYB A;  1BIX A;  2V0R A;  1ZWX A;  3G3C A;  3G3Y A;  3G8V A;  1AKO A;  3CJC D;  3G1K A;  4B5J A;  2IMQ X;  2JC5 A;  4L21 A;  2EI9 A;  3G0A A;  4FVA A;  4GEW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...