2D29A

Structural study on project id tt0172 from thermus thermophilus hb8
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
386
structure length
386
Chain Sequence
GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEAV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords acyl-CoA dehydrogenase
publication title Structural study on project ID TT0172 from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 156
structure length 386
sequence length 386
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2d29A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2d29A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2d29A02
2R0MA 4Q4UA 4L38A 3F29A 4Q5BA 3MXLA 3X0XA 4M9AA 2YYLA 3NF4A 4U83A 2YYMA 1SIQA 1UKWA 1WS9A 2CX9A 4OO2A 3D1IA 3HWCA 1RX0A 4NXLA 1SIRA 3MPJA 1EGDA 2ZO5A 3BNGA 3SWOA 5K3IA 1EGCA 2VIGA 3R7KA 3D9EA 3LG1A 3II9A 3AFFA 1QDBA 3FO3A 2OR0A 4L3ZA 4Q1OA 3L1TA 2YYIA 3D9FA 3SF6A 1IVHA 3X0YA 2EBAA 2YYJA 3GM6A 3S7WA 3UBRA 3B96A 2OT4A 3AFEA 2J7AA 2IX6A 4IV6A 2IX5A 4O5MA 2A1TA 2REHA 1FS9A 2YYGA 3BNHA 2ZAFA 1OAHA 4L3XA 1GU6A 4Q5CA 2RDZA 2E80A 1T9GA 4Q17A 3D9DA 1FS8A 2JIFA 2C0UA 3OWMA 3EONA 4DOYA 2VR0A 2WBIA 3FCJA 2D29A 1W07A 3MKHA 1IS2A 1JQIA 3SCEA 4ZXVA 3MDDA 3BNJA 5K3HA 4N5FA 1UDYA 3MMOA 3OWAA 3D9GA 1BUCA 1U8VA 2YYKA 1FS7A 2PG0A 2Z1QA 4WJYA 3SXQA 2C12A 4L3YA 3RKHA 4P13A 4X28C 3TORA 4KTOA 4W9UA 2FONA 3M9VA 3BNFA 2DVLA 2DDHA 2JBSA 3OIBA 4X28A 3EOMA 3GNCA 4RM7A 3LGQA 1EGEA 2RFQA 4HR3A 4ZYJA 1R2JA 2RF7A 4JEKA 3MPIA 3PFDA 5K3JA 2UXWA 4XVXA 3D6BA 2JBTA 5K3GA 4KCFA 3MDEA 2E81A 4IRNA 4Q0TA 2JBRA 3TTBA 3P4TA 3UU9A 3GQTA 4G5EA 2R0NA 4L1FA
chains in the Genus database with same CATH superfamily
2GBBA 1X90A 2R0MA 4Q4UA 4FF4A 2Q8FA 2EC5A 4L38A 3F29A 4KSAA 4Q5BA 2CJ8A 3MXLA 3C46A 1XFZA 4DZYA 3X0XA 1X91A 4M9AA 2YYLA 2Q8GA 4HKRA 4V26A 3NF4A 4U83A 3Q24A 2YYMA 1SIQA 2BU2A 4V25A 1UKWA 2HJNA 2PNRA 1WS9A 2Q8IA 2CX9A 2BU5A 1SK6A 1RJ1A 4OO2A 3D1IA 1XFXA 3HWCA 5M4KA 1RX0A 4NXLA 4AKGA 1SIRA 3MPJA 1EGDA 2ZO5A 1K90A 1S26A 3SWOA 3BNGA 4AI6A 2FP1A 4FZ4A 5B6BA 5EZ3A 5K3IA 1EGCA 5J71A 2VIGA 3R7KA 2CJ7A 3D9EA 2QR4A 3LG1A 3II9A 3AFFA 1QDBA 4E01A 4P79A 3FO3A 2OR0A 2PO4A 4L3ZA 4Q1OA 3X29A 3L1TA 2YYIA 3D9FA 4E02A 3C2PA 3SF6A 4AKIA 1IVHA 3X0YA 3VADA 2EBAA 1Y8PA 2YYJA 3Q0AA 1XFVA 3GM6A 3S7WA 3UBRA 2ZDYA 3B96A 2CJ4A 2ZDXA 3U33A 2OT4A 3AFEA 2J7AA 4HKSA 4E00A 2IX6A 3Q22A 4IV6A 1PI1A 2IX5A 4O5MA 2A1TA 2REHA 1FS9A 1XFWA 2CJ6A 2YYGA 3BNHA 2Q8HA 2ZAFA 3TZ5A 1OAHA 2OJQA 4H81A 1GJVA 4L3XA 3C3LA 1GU6A 4MPEA 4Q5CA 2RDZA 1Y8OA 5GJVE 2E80A 1T9GA 3TZ2A 3CRLA 2BU7A 4Q17A 3D9DA 1FS8A 2JIFA 1Y0VA 2C0UA 2XQRB 3OWMA 2XS1A 4LQQB 5BRKA 3EONA 3Q23A 4FF3A 2R05A 1GKXA 1Y8NA 2XS8A 4MPNA 4DOYA 1RP3A 1K8TA 1X8ZA 2VR0A 2WBIA 2AO2A 2EBHX 2YGWA 3FCJA 2D29A 4JIZA 2R02A 4G97A 1W07A 1JM6A 2BU6A 3MKHA 1IS2A 1JQIA 1LVCA 4QICA 4ZXVA 3MDDA 1K93A 1XFUA 3BNJA 5K3HA 3SCEA 5M4NA 3D2RA 4N5FA 4H85A 1UDYA 3MMOA 3OWAA 3D9GA 1RJ4A 1XFYA 1BUCA 1U8VA 3KMLA 5J6AA 2YYKA 1FS7A 2PG0A 2Z1QA 4LQSB 3N0RA 5B5WA 4WJYA 1XG2B 4MP7A 3SXQA 2C12A 4L3YA 3RKHA 4P13A 4X28C 2BTZA 3TZ4A 3TORA 4AKHA 3VKHA 2R03A 4KTOA 2VF1A 4W9UA 2FONA 3M9VA 3BNFA 2BU8A 4MP2A 2DVLA 3DJLA 2DDHA 2JBSA 3OIBA 2E0AA 4X28A 3EOMA 1SC5A 2OEVA 3GNCA 2EBFX 3CRKA 5BRMA 4RM7A 2CJ5A 3LGQA 1EGEA 2RFQA 4HR3A 4ZYJA 4H7QA 1R2JA 2RF7A 4JEKA 2LFWA 3MPIA 1PK0A 4KS9A 5GJWE 3PFDA 5K3JA 2UXWA 1R3BA 4JIOA 5M4PA 4FF2A 4XVXA 2OEXA 3D6BA 2JBTA 2F6LA 5B5VA 5K3GA 3CE2A 4KCFA 3MDEA 1GKZA 2E81A 4F0XA 4IRNA 4Q0TA 2JBRA 4J1VA 2AZEA 3TZ0A 5M4MA 4FF1A 3TTBA 4MPCA 3P4TA 4KSFA 3VKGA 2FP2A 3UU9A 3GQTA 4G5EA 2R0NA 4L1FA 2ZKJA
chains in the Genus database with same CATH topology
2R0MA 4Q4UA 4L38A 3F29A 4Q5BA 3MXLA 3X0XA 4M9AA 2YYLA 3NF4A 4U83A 2YYMA 1SIQA 1UKWA 1WS9A 2CX9A 4OO2A 3D1IA 3HWCA 1RX0A 4NXLA 1SIRA 3MPJA 1EGDA 2ZO5A 3BNGA 3SWOA 5K3IA 1EGCA 2VIGA 3R7KA 3D9EA 3LG1A 3II9A 3AFFA 1QDBA 3FO3A 2OR0A 4L3ZA 4Q1OA 3L1TA 2YYIA 3D9FA 3SF6A 1IVHA 3X0YA 2EBAA 2YYJA 3GM6A 3S7WA 3UBRA 3B96A 2OT4A 3AFEA 2J7AA 2IX6A 4IV6A 2IX5A 4O5MA 2A1TA 2REHA 1FS9A 2YYGA 3BNHA 2ZAFA 1OAHA 4L3XA 1GU6A 4Q5CA 2RDZA 2E80A 1T9GA 4Q17A 3D9DA 1FS8A 2JIFA 2C0UA 3OWMA 3EONA 4DOYA 2VR0A 2WBIA 3FCJA 2D29A 1W07A 3MKHA 1IS2A 1JQIA 3SCEA 4ZXVA 3MDDA 3BNJA 5K3HA 4N5FA 1UDYA 3MMOA 3OWAA 3D9GA 1BUCA 1U8VA 2YYKA 1FS7A 2PG0A 2Z1QA 4WJYA 3SXQA 2C12A 4L3YA 3RKHA 4P13A 4X28C 3TORA 4KTOA 4W9UA 2FONA 3M9VA 3BNFA 2DVLA 2DDHA 2JBSA 3OIBA 4X28A 3EOMA 3GNCA 4RM7A 3LGQA 1EGEA 2RFQA 4HR3A 4ZYJA 1R2JA 2RF7A 4JEKA 3MPIA 3PFDA 5K3JA 2UXWA 4XVXA 3D6BA 2JBTA 5K3GA 4KCFA 3MDEA 2E81A 4IRNA 4Q0TA 2JBRA 3TTBA 3P4TA 3UU9A 3GQTA 4G5EA 2R0NA 4L1FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R0M A;  4Q4U A;  4L38 A;  3F29 A;  4Q5B A;  3MXL A;  3X0X A;  4M9A A;  2YYL A;  3NF4 A;  4U83 A;  2YYM A;  1SIQ A;  1UKW A;  1WS9 A;  2CX9 A;  4OO2 A;  3D1I A;  3HWC A;  1RX0 A;  4NXL A;  1SIR A;  3MPJ A;  1EGD A;  2ZO5 A;  3BNG A;  3SWO A;  5K3I A;  1EGC A;  2VIG A;  3R7K A;  3D9E A;  3LG1 A;  3II9 A;  3AFF A;  1QDB A;  3FO3 A;  2OR0 A;  4L3Z A;  4Q1O A;  3L1T A;  2YYI A;  3D9F A;  3SF6 A;  1IVH A;  3X0Y A;  2EBA A;  2YYJ A;  3GM6 A;  3S7W A;  3UBR A;  3B96 A;  2OT4 A;  3AFE A;  2J7A A;  2IX6 A;  4IV6 A;  2IX5 A;  4O5M A;  2A1T A;  2REH A;  1FS9 A;  2YYG A;  3BNH A;  2ZAF A;  1OAH A;  4L3X A;  1GU6 A;  4Q5C A;  2RDZ A;  2E80 A;  1T9G A;  4Q17 A;  3D9D A;  1FS8 A;  2JIF A;  2C0U A;  3OWM A;  3EON A;  4DOY A;  2VR0 A;  2WBI A;  3FCJ A;  2D29 A;  1W07 A;  3MKH A;  1IS2 A;  1JQI A;  3SCE A;  4ZXV A;  3MDD A;  3BNJ A;  5K3H A;  4N5F A;  1UDY A;  3MMO A;  3OWA A;  3D9G A;  1BUC A;  1U8V A;  2YYK A;  1FS7 A;  2PG0 A;  2Z1Q A;  4WJY A;  3SXQ A;  2C12 A;  4L3Y A;  3RKH A;  4P13 A;  4X28 C;  3TOR A;  4KTO A;  4W9U A;  2FON A;  3M9V A;  3BNF A;  2DVL A;  2DDH A;  2JBS A;  3OIB A;  4X28 A;  3EOM A;  3GNC A;  4RM7 A;  3LGQ A;  1EGE A;  2RFQ A;  4HR3 A;  4ZYJ A;  1R2J A;  2RF7 A;  4JEK A;  3MPI A;  3PFD A;  5K3J A;  2UXW A;  4XVX A;  3D6B A;  2JBT A;  5K3G A;  4KCF A;  3MDE A;  2E81 A;  4IRN A;  4Q0T A;  2JBR A;  3TTB A;  3P4T A;  3UU9 A;  3GQT A;  4G5E A;  2R0N A;  4L1F A; 
#chains in the Genus database with same CATH topology
 2GBB A;  1X90 A;  2R0M A;  4Q4U A;  4FF4 A;  2Q8F A;  2EC5 A;  4L38 A;  3F29 A;  4KSA A;  4Q5B A;  2CJ8 A;  3MXL A;  3C46 A;  1XFZ A;  4DZY A;  3X0X A;  1X91 A;  4M9A A;  2YYL A;  2Q8G A;  4HKR A;  4V26 A;  3NF4 A;  4U83 A;  3Q24 A;  2YYM A;  1SIQ A;  2BU2 A;  4V25 A;  1UKW A;  2HJN A;  2PNR A;  1WS9 A;  2Q8I A;  2CX9 A;  2BU5 A;  1SK6 A;  1RJ1 A;  4OO2 A;  3D1I A;  1XFX A;  3HWC A;  5M4K A;  1RX0 A;  4NXL A;  4AKG A;  1SIR A;  3MPJ A;  1EGD A;  2ZO5 A;  1K90 A;  1S26 A;  3SWO A;  3BNG A;  4AI6 A;  2FP1 A;  4FZ4 A;  5B6B A;  5EZ3 A;  5K3I A;  1EGC A;  5J71 A;  2VIG A;  3R7K A;  2CJ7 A;  3D9E A;  2QR4 A;  3LG1 A;  3II9 A;  3AFF A;  1QDB A;  4E01 A;  4P79 A;  3FO3 A;  2OR0 A;  2PO4 A;  4L3Z A;  4Q1O A;  3X29 A;  3L1T A;  2YYI A;  3D9F A;  4E02 A;  3C2P A;  3SF6 A;  4AKI A;  1IVH A;  3X0Y A;  3VAD A;  2EBA A;  1Y8P A;  2YYJ A;  3Q0A A;  1XFV A;  3GM6 A;  3S7W A;  3UBR A;  2ZDY A;  3B96 A;  2CJ4 A;  2ZDX A;  3U33 A;  2OT4 A;  3AFE A;  2J7A A;  4HKS A;  4E00 A;  2IX6 A;  3Q22 A;  4IV6 A;  1PI1 A;  2IX5 A;  4O5M A;  2A1T A;  2REH A;  1FS9 A;  1XFW A;  2CJ6 A;  2YYG A;  3BNH A;  2Q8H A;  2ZAF A;  3TZ5 A;  1OAH A;  2OJQ A;  4H81 A;  1GJV A;  4L3X A;  3C3L A;  1GU6 A;  4MPE A;  4Q5C A;  2RDZ A;  1Y8O A;  5GJV E;  2E80 A;  1T9G A;  3TZ2 A;  3CRL A;  2BU7 A;  4Q17 A;  3D9D A;  1FS8 A;  2JIF A;  1Y0V A;  2C0U A;  2XQR B;  3OWM A;  2XS1 A;  4LQQ B;  5BRK A;  3EON A;  3Q23 A;  4FF3 A;  2R05 A;  1GKX A;  1Y8N A;  2XS8 A;  4MPN A;  4DOY A;  1RP3 A;  1K8T A;  1X8Z A;  2VR0 A;  2WBI A;  2AO2 A;  2EBH X;  2YGW A;  3FCJ A;  2D29 A;  4JIZ A;  2R02 A;  4G97 A;  1W07 A;  1JM6 A;  2BU6 A;  3MKH A;  1IS2 A;  1JQI A;  1LVC A;  4QIC A;  4ZXV A;  3MDD A;  1K93 A;  1XFU A;  3BNJ A;  5K3H A;  3SCE A;  5M4N A;  3D2R A;  4N5F A;  4H85 A;  1UDY A;  3MMO A;  3OWA A;  3D9G A;  1RJ4 A;  1XFY A;  1BUC A;  1U8V A;  3KML A;  5J6A A;  2YYK A;  1FS7 A;  2PG0 A;  2Z1Q A;  4LQS B;  3N0R A;  5B5W A;  4WJY A;  1XG2 B;  4MP7 A;  3SXQ A;  2C12 A;  4L3Y A;  3RKH A;  4P13 A;  4X28 C;  2BTZ A;  3TZ4 A;  3TOR A;  4AKH A;  3VKH A;  2R03 A;  4KTO A;  2VF1 A;  4W9U A;  2FON A;  3M9V A;  3BNF A;  2BU8 A;  4MP2 A;  2DVL A;  3DJL A;  2DDH A;  2JBS A;  3OIB A;  2E0A A;  4X28 A;  3EOM A;  1SC5 A;  2OEV A;  3GNC A;  2EBF X;  3CRK A;  5BRM A;  4RM7 A;  2CJ5 A;  3LGQ A;  1EGE A;  2RFQ A;  4HR3 A;  4ZYJ A;  4H7Q A;  1R2J A;  2RF7 A;  4JEK A;  2LFW A;  3MPI A;  1PK0 A;  4KS9 A;  5GJW E;  3PFD A;  5K3J A;  2UXW A;  1R3B A;  4JIO A;  5M4P A;  4FF2 A;  4XVX A;  2OEX A;  3D6B A;  2JBT A;  2F6L A;  5B5V A;  5K3G A;  3CE2 A;  4KCF A;  3MDE A;  1GKZ A;  2E81 A;  4F0X A;  4IRN A;  4Q0T A;  2JBR A;  4J1V A;  2AZE A;  3TZ0 A;  5M4M A;  4FF1 A;  3TTB A;  4MPC A;  3P4T A;  4KSF A;  3VKG A;  2FP2 A;  3UU9 A;  3GQT A;  4G5E A;  2R0N A;  4L1F A;  2ZKJ A; 
#chains in the Genus database with same CATH homology
 2R0M A;  4Q4U A;  4L38 A;  3F29 A;  4Q5B A;  3MXL A;  3X0X A;  4M9A A;  2YYL A;  3NF4 A;  4U83 A;  2YYM A;  1SIQ A;  1UKW A;  1WS9 A;  2CX9 A;  4OO2 A;  3D1I A;  3HWC A;  1RX0 A;  4NXL A;  1SIR A;  3MPJ A;  1EGD A;  2ZO5 A;  3BNG A;  3SWO A;  5K3I A;  1EGC A;  2VIG A;  3R7K A;  3D9E A;  3LG1 A;  3II9 A;  3AFF A;  1QDB A;  3FO3 A;  2OR0 A;  4L3Z A;  4Q1O A;  3L1T A;  2YYI A;  3D9F A;  3SF6 A;  1IVH A;  3X0Y A;  2EBA A;  2YYJ A;  3GM6 A;  3S7W A;  3UBR A;  3B96 A;  2OT4 A;  3AFE A;  2J7A A;  2IX6 A;  4IV6 A;  2IX5 A;  4O5M A;  2A1T A;  2REH A;  1FS9 A;  2YYG A;  3BNH A;  2ZAF A;  1OAH A;  4L3X A;  1GU6 A;  4Q5C A;  2RDZ A;  2E80 A;  1T9G A;  4Q17 A;  3D9D A;  1FS8 A;  2JIF A;  2C0U A;  3OWM A;  3EON A;  4DOY A;  2VR0 A;  2WBI A;  3FCJ A;  2D29 A;  1W07 A;  3MKH A;  1IS2 A;  1JQI A;  3SCE A;  4ZXV A;  3MDD A;  3BNJ A;  5K3H A;  4N5F A;  1UDY A;  3MMO A;  3OWA A;  3D9G A;  1BUC A;  1U8V A;  2YYK A;  1FS7 A;  2PG0 A;  2Z1Q A;  4WJY A;  3SXQ A;  2C12 A;  4L3Y A;  3RKH A;  4P13 A;  4X28 C;  3TOR A;  4KTO A;  4W9U A;  2FON A;  3M9V A;  3BNF A;  2DVL A;  2DDH A;  2JBS A;  3OIB A;  4X28 A;  3EOM A;  3GNC A;  4RM7 A;  3LGQ A;  1EGE A;  2RFQ A;  4HR3 A;  4ZYJ A;  1R2J A;  2RF7 A;  4JEK A;  3MPI A;  3PFD A;  5K3J A;  2UXW A;  4XVX A;  3D6B A;  2JBT A;  5K3G A;  4KCF A;  3MDE A;  2E81 A;  4IRN A;  4Q0T A;  2JBR A;  3TTB A;  3P4T A;  3UU9 A;  3GQT A;  4G5E A;  2R0N A;  4L1F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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