2D29A

Structural study on project id tt0172 from thermus thermophilus hb8
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
386
structure length
386
Chain Sequence
b'GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEAV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords acyl-CoA dehydrogenase
publication title Structural study on project ID TT0172 from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 156
structure length 386
sequence length 386
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2d29A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2d29A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2d29A02
1SIQA 3EOMA 2JBSA 4IRNA 4NXLA 2E81A 3D1IA 1IS2A 2JBTA 4JEKA 1U8VA 2D29A 3GQTA 3UU9A 2IX6A 2REHA 1BUCA 3X0YA 3RKHA 2YYMA 2R0NA 2JIFA 4W9UA 4N5FA 3BNHA 4Q4UA 2J7AA 3D9FA 4RM7A 4ZXVA 3PFDA 4XVXA 2ZAFA 4L38A 3BNFA 3M9VA 5K3HA 1UDYA 4KTOA 5K3JA 3SF6A 2RFQA 2PG0A 2IX5A 1W07A 3SWOA 3AFEA 2Z1QA 1FS9A 3SXQA 4Q0TA 3BNGA 5K3IA 3FO3A 2RF7A 3BNJA 3UBRA 1SIRA 1EGDA 4IV6A 3SCEA 3D6BA 4Q1OA 1R2JA 2WBIA 3OIBA 4X28C 2YYLA 3X0XA 3L1TA 2DDHA 3FCJA 3S7WA 2OR0A 3MDEA 3HWCA 3GM6A 4O5MA 2C0UA 3B96A 1EGEA 3TORA 2A1TA 3R7KA 3AFFA 2VR0A 3OWMA 1FS8A 4U83A 2YYIA 3D9EA 4P13A 4X28A 4Q5CA 1T9GA 2C12A 3MMOA 1GU6A 2VIGA 4Q5BA 3D9DA 4HR3A 4G5EA 1IVHA 1WS9A 4DOYA 1QDBA 3TTBA 2R0MA 3D9GA 3MKHA 1FS7A 3II9A 3MPIA 3EONA 3F29A 4Q17A 4OO2A 4L3YA 2CX9A 2ZO5A 1JQIA 1EGCA 2YYJA 1UKWA 3MXLA 3NF4A 3LG1A 4WJYA 2FONA 3GNCA 5K3GA 2YYGA 2JBRA 4L3ZA 4KCFA 1OAHA 4L1FA 4M9AA 4L3XA 3MPJA 3P4TA 2RDZA 2EBAA 1RX0A 2OT4A 3LGQA 4ZYJA 2E80A 3OWAA 3MDDA 2DVLA 2YYKA 2UXWA
chains in the Genus database with same CATH superfamily
1SIQA 3EOMA 1XFWA 4MPNA 2JBSA 4IRNA 4NXLA 1K90A 2E81A 5BRMA 3D1IA 4MPCA 2BU8A 2PO4A 2Q8FA 1IS2A 2QR4A 5M4PA 5GJVE 3X29A 3CE2A 2JBTA 4JEKA 1U8VA 2D29A 1GKZA 3GQTA 2BU6A 3UU9A 3DJLA 2IX6A 1LVCA 2REHA 1BUCA 3X0YA 1Y8OA 3RKHA 1XFZA 2R0NA 2JIFA 2YYMA 3VADA 4W9UA 5BRKA 3TZ2A 4N5FA 2Q8IA 1X91A 5M4NA 3BNHA 4Q4UA 2J7AA 3D9FA 4RM7A 4ZXVA 3PFDA 1JM6A 2CJ4A 4FF1A 4XVXA 2OEXA 1S26A 2ZAFA 4L38A 3BNFA 1PI1A 3N0RA 5J6AA 3M9VA 5K3HA 1UDYA 4KTOA 5K3JA 2XS8A 2OJQA 5M4MA 3SF6A 1RJ4A 2RFQA 2PG0A 2IX5A 1W07A 3SWOA 3AFEA 2CJ7A 2Z1QA 1FS9A 3SXQA 3Q0AA 3VKHA 4Q0TA 3BNGA 4AKGA 2XS1A 5K3IA 3TZ0A 2R05A 3FO3A 4MP7A 2RF7A 2BU2A 1GKXA 3BNJA 3KMLA 4LQSB 3Q22A 3UBRA 4E01A 1SIRA 1EGDA 2XQRB 2BU7A 2LFWA 1K93A 4IV6A 2PNRA 3SCEA 3D6BA 2R02A 1XFUA 1R2JA 2WBIA 3OIBA 4X28C 2AZEA 2CJ8A 2YYLA 2E0AA 4Q1OA 3X0XA 3L1TA 2F6LA 2DDHA 4E00A 3FCJA 3S7WA 2OR0A 3MDEA 4MP2A 3HWCA 3GM6A 4O5MA 1SK6A 3C46A 2EBHX 2C0UA 4QICA 3B96A 4AKHA 1EGEA 4FF4A 3TORA 2A1TA 3R7KA 3AFFA 2VR0A 3CRLA 3OWMA 1FS8A 4U83A 2YGWA 3D9EA 4P13A 4X28A 1X90A 2YYIA 4KS9A 4Q5CA 1XG2B 1Y8NA 1XFYA 4P79A 3C3LA 1T9GA 2C12A 3MMOA 1GU6A 2CJ6A 4H81A 4HKSA 1XFVA 2VIGA 4V25A 4Q5BA 2ZDXA 3D9DA 4HR3A 4G5EA 4H7QA 5B6BA 4AKIA 4KSAA 2Q8HA 3VKGA 2AO2A 1IVHA 1PK0A 1SC5A 4FF3A 1WS9A 4DOYA 1QDBA 5B5VA 3TTBA 2R0MA 4FZ4A 3D9GA 3MKHA 1FS7A 3II9A 3MPIA 3EONA 1RP3A 2VF1A 5GJWE 2R03A 4DZYA 4AI6A 2CJ5A 1R3BA 2FP1A 1RJ1A 3F29A 2HJNA 4KSFA 4OO2A 4L3YA 4Q17A 3C2PA 3Q23A 2CX9A 1K8TA 2ZO5A 1JQIA 1EGCA 5B5WA 5J71A 2YYJA 4V26A 4H85A 1UKWA 3MXLA 3NF4A 3LG1A 4WJYA 2FONA 1X8ZA 2EC5A 3GNCA 4F0XA 1GJVA 5K3GA 2YYGA 2JBRA 2Q8GA 1XFXA 4L3ZA 4JIOA 5M4KA 4E02A 4KCFA 1OAHA 2BU5A 4FF2A 1Y8PA 3TZ4A 4L1FA 4M9AA 4L3XA 3MPJA 2OT4A 3P4TA 2FP2A 2EBAA 1RX0A 2RDZA 4J1VA 4LQQB 3LGQA 4ZYJA 2E80A 2EBFX 2BTZA 2GBBA 2OEVA 4MPEA 1Y0VA 3OWAA 4G97A 3MDDA 4HKRA 3Q24A 5EZ3A 3D2RA 2ZDYA 2DVLA 4JIZA 3CRKA 2YYKA 3TZ5A 3U33A 2ZKJA 2UXWA
chains in the Genus database with same CATH topology
1SIQA 3EOMA 2JBSA 4IRNA 4NXLA 2E81A 3D1IA 1IS2A 2JBTA 4JEKA 1U8VA 2D29A 3GQTA 3UU9A 2IX6A 2REHA 1BUCA 3X0YA 3RKHA 2YYMA 2R0NA 2JIFA 4W9UA 4N5FA 3BNHA 4Q4UA 2J7AA 3D9FA 4RM7A 4ZXVA 3PFDA 4XVXA 2ZAFA 4L38A 3BNFA 3M9VA 5K3HA 1UDYA 4KTOA 5K3JA 3SF6A 2RFQA 2PG0A 2IX5A 1W07A 3SWOA 3AFEA 2Z1QA 1FS9A 3SXQA 4Q0TA 3BNGA 5K3IA 3FO3A 2RF7A 3BNJA 3UBRA 1SIRA 1EGDA 4IV6A 3SCEA 3D6BA 4Q1OA 1R2JA 2WBIA 3OIBA 4X28C 2YYLA 3X0XA 3L1TA 2DDHA 3FCJA 3S7WA 2OR0A 3MDEA 3HWCA 3GM6A 4O5MA 2C0UA 3B96A 1EGEA 3TORA 2A1TA 3R7KA 3AFFA 2VR0A 3OWMA 1FS8A 4U83A 2YYIA 3D9EA 4P13A 4X28A 4Q5CA 1T9GA 2C12A 3MMOA 1GU6A 2VIGA 4Q5BA 3D9DA 4HR3A 4G5EA 1IVHA 1WS9A 4DOYA 1QDBA 3TTBA 2R0MA 3D9GA 3MKHA 1FS7A 3II9A 3MPIA 3EONA 3F29A 4Q17A 4OO2A 4L3YA 2CX9A 2ZO5A 1JQIA 1EGCA 2YYJA 1UKWA 3MXLA 3NF4A 3LG1A 4WJYA 2FONA 3GNCA 5K3GA 2YYGA 2JBRA 4L3ZA 4KCFA 1OAHA 4L1FA 4M9AA 4L3XA 3MPJA 3P4TA 2RDZA 2EBAA 1RX0A 2OT4A 3LGQA 4ZYJA 2E80A 3OWAA 3MDDA 2DVLA 2YYKA 2UXWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SIQ A;  3EOM A;  2JBS A;  4IRN A;  4NXL A;  2E81 A;  3D1I A;  1IS2 A;  2JBT A;  4JEK A;  1U8V A;  2D29 A;  3GQT A;  3UU9 A;  2IX6 A;  2REH A;  1BUC A;  3X0Y A;  3RKH A;  2YYM A;  2R0N A;  2JIF A;  4W9U A;  4N5F A;  3BNH A;  4Q4U A;  2J7A A;  3D9F A;  4RM7 A;  4ZXV A;  3PFD A;  4XVX A;  2ZAF A;  4L38 A;  3BNF A;  3M9V A;  5K3H A;  1UDY A;  4KTO A;  5K3J A;  3SF6 A;  2RFQ A;  2PG0 A;  2IX5 A;  1W07 A;  3SWO A;  3AFE A;  2Z1Q A;  1FS9 A;  3SXQ A;  4Q0T A;  3BNG A;  5K3I A;  3FO3 A;  2RF7 A;  3BNJ A;  3UBR A;  1SIR A;  1EGD A;  4IV6 A;  3SCE A;  3D6B A;  4Q1O A;  1R2J A;  2WBI A;  3OIB A;  4X28 C;  2YYL A;  3X0X A;  3L1T A;  2DDH A;  3FCJ A;  3S7W A;  2OR0 A;  3MDE A;  3HWC A;  3GM6 A;  4O5M A;  2C0U A;  3B96 A;  1EGE A;  3TOR A;  2A1T A;  3R7K A;  3AFF A;  2VR0 A;  3OWM A;  1FS8 A;  4U83 A;  2YYI A;  3D9E A;  4P13 A;  4X28 A;  4Q5C A;  1T9G A;  2C12 A;  3MMO A;  1GU6 A;  2VIG A;  4Q5B A;  3D9D A;  4HR3 A;  4G5E A;  1IVH A;  1WS9 A;  4DOY A;  1QDB A;  3TTB A;  2R0M A;  3D9G A;  3MKH A;  1FS7 A;  3II9 A;  3MPI A;  3EON A;  3F29 A;  4Q17 A;  4OO2 A;  4L3Y A;  2CX9 A;  2ZO5 A;  1JQI A;  1EGC A;  2YYJ A;  1UKW A;  3MXL A;  3NF4 A;  3LG1 A;  4WJY A;  2FON A;  3GNC A;  5K3G A;  2YYG A;  2JBR A;  4L3Z A;  4KCF A;  1OAH A;  4L1F A;  4M9A A;  4L3X A;  3MPJ A;  3P4T A;  2RDZ A;  2EBA A;  1RX0 A;  2OT4 A;  3LGQ A;  4ZYJ A;  2E80 A;  3OWA A;  3MDD A;  2DVL A;  2YYK A;  2UXW A; 
#chains in the Genus database with same CATH topology
 1SIQ A;  3EOM A;  1XFW A;  4MPN A;  2JBS A;  4IRN A;  4NXL A;  1K90 A;  2E81 A;  5BRM A;  3D1I A;  4MPC A;  2BU8 A;  2PO4 A;  2Q8F A;  1IS2 A;  2QR4 A;  5M4P A;  5GJV E;  3X29 A;  3CE2 A;  2JBT A;  4JEK A;  1U8V A;  2D29 A;  1GKZ A;  3GQT A;  2BU6 A;  3UU9 A;  3DJL A;  2IX6 A;  1LVC A;  2REH A;  1BUC A;  3X0Y A;  1Y8O A;  3RKH A;  1XFZ A;  2R0N A;  2JIF A;  2YYM A;  3VAD A;  4W9U A;  5BRK A;  3TZ2 A;  4N5F A;  2Q8I A;  1X91 A;  5M4N A;  3BNH A;  4Q4U A;  2J7A A;  3D9F A;  4RM7 A;  4ZXV A;  3PFD A;  1JM6 A;  2CJ4 A;  4FF1 A;  4XVX A;  2OEX A;  1S26 A;  2ZAF A;  4L38 A;  3BNF A;  1PI1 A;  3N0R A;  5J6A A;  3M9V A;  5K3H A;  1UDY A;  4KTO A;  5K3J A;  2XS8 A;  2OJQ A;  5M4M A;  3SF6 A;  1RJ4 A;  2RFQ A;  2PG0 A;  2IX5 A;  1W07 A;  3SWO A;  3AFE A;  2CJ7 A;  2Z1Q A;  1FS9 A;  3SXQ A;  3Q0A A;  3VKH A;  4Q0T A;  3BNG A;  4AKG A;  2XS1 A;  5K3I A;  3TZ0 A;  2R05 A;  3FO3 A;  4MP7 A;  2RF7 A;  2BU2 A;  1GKX A;  3BNJ A;  3KML A;  4LQS B;  3Q22 A;  3UBR A;  4E01 A;  1SIR A;  1EGD A;  2XQR B;  2BU7 A;  2LFW A;  1K93 A;  4IV6 A;  2PNR A;  3SCE A;  3D6B A;  2R02 A;  1XFU A;  1R2J A;  2WBI A;  3OIB A;  4X28 C;  2AZE A;  2CJ8 A;  2YYL A;  2E0A A;  4Q1O A;  3X0X A;  3L1T A;  2F6L A;  2DDH A;  4E00 A;  3FCJ A;  3S7W A;  2OR0 A;  3MDE A;  4MP2 A;  3HWC A;  3GM6 A;  4O5M A;  1SK6 A;  3C46 A;  2EBH X;  2C0U A;  4QIC A;  3B96 A;  4AKH A;  1EGE A;  4FF4 A;  3TOR A;  2A1T A;  3R7K A;  3AFF A;  2VR0 A;  3CRL A;  3OWM A;  1FS8 A;  4U83 A;  2YGW A;  3D9E A;  4P13 A;  4X28 A;  1X90 A;  2YYI A;  4KS9 A;  4Q5C A;  1XG2 B;  1Y8N A;  1XFY A;  4P79 A;  3C3L A;  1T9G A;  2C12 A;  3MMO A;  1GU6 A;  2CJ6 A;  4H81 A;  4HKS A;  1XFV A;  2VIG A;  4V25 A;  4Q5B A;  2ZDX A;  3D9D A;  4HR3 A;  4G5E A;  4H7Q A;  5B6B A;  4AKI A;  4KSA A;  2Q8H A;  3VKG A;  2AO2 A;  1IVH A;  1PK0 A;  1SC5 A;  4FF3 A;  1WS9 A;  4DOY A;  1QDB A;  5B5V A;  3TTB A;  2R0M A;  4FZ4 A;  3D9G A;  3MKH A;  1FS7 A;  3II9 A;  3MPI A;  3EON A;  1RP3 A;  2VF1 A;  5GJW E;  2R03 A;  4DZY A;  4AI6 A;  2CJ5 A;  1R3B A;  2FP1 A;  1RJ1 A;  3F29 A;  2HJN A;  4KSF A;  4OO2 A;  4L3Y A;  4Q17 A;  3C2P A;  3Q23 A;  2CX9 A;  1K8T A;  2ZO5 A;  1JQI A;  1EGC A;  5B5W A;  5J71 A;  2YYJ A;  4V26 A;  4H85 A;  1UKW A;  3MXL A;  3NF4 A;  3LG1 A;  4WJY A;  2FON A;  1X8Z A;  2EC5 A;  3GNC A;  4F0X A;  1GJV A;  5K3G A;  2YYG A;  2JBR A;  2Q8G A;  1XFX A;  4L3Z A;  4JIO A;  5M4K A;  4E02 A;  4KCF A;  1OAH A;  2BU5 A;  4FF2 A;  1Y8P A;  3TZ4 A;  4L1F A;  4M9A A;  4L3X A;  3MPJ A;  2OT4 A;  3P4T A;  2FP2 A;  2EBA A;  1RX0 A;  2RDZ A;  4J1V A;  4LQQ B;  3LGQ A;  4ZYJ A;  2E80 A;  2EBF X;  2BTZ A;  2GBB A;  2OEV A;  4MPE A;  1Y0V A;  3OWA A;  4G97 A;  3MDD A;  4HKR A;  3Q24 A;  5EZ3 A;  3D2R A;  2ZDY A;  2DVL A;  4JIZ A;  3CRK A;  2YYK A;  3TZ5 A;  3U33 A;  2ZKJ A;  2UXW A; 
#chains in the Genus database with same CATH homology
 1SIQ A;  3EOM A;  2JBS A;  4IRN A;  4NXL A;  2E81 A;  3D1I A;  1IS2 A;  2JBT A;  4JEK A;  1U8V A;  2D29 A;  3GQT A;  3UU9 A;  2IX6 A;  2REH A;  1BUC A;  3X0Y A;  3RKH A;  2YYM A;  2R0N A;  2JIF A;  4W9U A;  4N5F A;  3BNH A;  4Q4U A;  2J7A A;  3D9F A;  4RM7 A;  4ZXV A;  3PFD A;  4XVX A;  2ZAF A;  4L38 A;  3BNF A;  3M9V A;  5K3H A;  1UDY A;  4KTO A;  5K3J A;  3SF6 A;  2RFQ A;  2PG0 A;  2IX5 A;  1W07 A;  3SWO A;  3AFE A;  2Z1Q A;  1FS9 A;  3SXQ A;  4Q0T A;  3BNG A;  5K3I A;  3FO3 A;  2RF7 A;  3BNJ A;  3UBR A;  1SIR A;  1EGD A;  4IV6 A;  3SCE A;  3D6B A;  4Q1O A;  1R2J A;  2WBI A;  3OIB A;  4X28 C;  2YYL A;  3X0X A;  3L1T A;  2DDH A;  3FCJ A;  3S7W A;  2OR0 A;  3MDE A;  3HWC A;  3GM6 A;  4O5M A;  2C0U A;  3B96 A;  1EGE A;  3TOR A;  2A1T A;  3R7K A;  3AFF A;  2VR0 A;  3OWM A;  1FS8 A;  4U83 A;  2YYI A;  3D9E A;  4P13 A;  4X28 A;  4Q5C A;  1T9G A;  2C12 A;  3MMO A;  1GU6 A;  2VIG A;  4Q5B A;  3D9D A;  4HR3 A;  4G5E A;  1IVH A;  1WS9 A;  4DOY A;  1QDB A;  3TTB A;  2R0M A;  3D9G A;  3MKH A;  1FS7 A;  3II9 A;  3MPI A;  3EON A;  3F29 A;  4Q17 A;  4OO2 A;  4L3Y A;  2CX9 A;  2ZO5 A;  1JQI A;  1EGC A;  2YYJ A;  1UKW A;  3MXL A;  3NF4 A;  3LG1 A;  4WJY A;  2FON A;  3GNC A;  5K3G A;  2YYG A;  2JBR A;  4L3Z A;  4KCF A;  1OAH A;  4L1F A;  4M9A A;  4L3X A;  3MPJ A;  3P4T A;  2RDZ A;  2EBA A;  1RX0 A;  2OT4 A;  3LGQ A;  4ZYJ A;  2E80 A;  3OWA A;  3MDD A;  2DVL A;  2YYK A;  2UXW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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