2D30A

Crystal structure of cytidine deaminase cdd-2 (ba4525) from bacillus anthracis at 2.40a resolution
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
124
structure length
124
Chain Sequence
MNSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTKRPVPPCGACRQVMVELCKQDTKVYLSNLHGDVQETTVGELLPGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords cytidine deaminase
publication title Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A Resolution
rcsb
source organism Bacillus anthracis
total genus 35
structure length 124
sequence length 124
chains with identical sequence B
ec nomenclature ec 3.5.4.5: Cytidine deaminase.
pdb deposition date 2005-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 2d30A00
2D5NA 1YSDA 3EX8A 5M59B 4E0QA 1CTTA 1R5XA 4P9CA 1ZABA 2O96A 1WN6A 2Z3IA 2D30A 1VQ2A 4O8YA 4QFTA 5GAOA 3RZUA 2RPZA 1MQ0A 3OCQA 4WIGA 2KCQA 1WKQA 1Z3AA 3E1UA 4ILGC 1ALNA 4ZD5A 2G84A 2Z3GA 1OX7A 2NX8A 4LD2A 4HRQA 2NYTA 5C2OA 4MSQA 4OCNA 2HVWA 2O7PA 3DH1A 4LCNA 2FR5A 4MS7A 4OCLA 2PW9A 4OCNB 1CTUA 3RZVA 4WIFA 2O95A 4P9DA 2OG4A 4O8YB 1UX1A 5DCAJ 2HXVA 2QLCA 3G8QA 1UWZA 1P6OA 4O8XA 4O8XB 4LD4A 1WN5A 2ZNVA 3ZPGA 2FR6A 4PQTA 4G3MA 4MSDA 4I43B 4HRWA 4OCMA 1RB7A 4OCLB 2O3KA 1JTKA 4OCMB 4P9EA 4F3WA 2HVVA 3R2NA 4ZFRA 2Z3HA 3MPZA 3ZPCA 2P87A 4ZD4A 1UX0A 2ZNRA 4ZFTA 3IJFX 1R5TA 4OWPA 2A8NA 2KKSA 1YSBA 3SBGA 1UAQA 3ZEFB 4MSMA 4EG2A 4OWPB 4LC5A 1AF2A 4D10F 3DMOA 2G6VA 2P8RA 2OBCA 4KITC 5CW6A 3B8FA 3OJ6A 4F7OA 2Z3JA 1OI0A 4NQLA 1TIYA 4LCPA 4BGDC 4JXEA 4MSJA 2B3JA 5M52C 2B3ZA 4K1RA 2W4LA 1WWRA 4LCOA
chains in the Genus database with same CATH superfamily
1G8MA 2D5NA 1YSDA 3EX8A 5M59B 4E0QA 1CTTA 1R5XA 4P9CA 1ZABA 2O96A 1WN6A 2Z3IA 2D30A 1VQ2A 3BH1A 2B1IA 4O8YA 4QFTA 5GAOA 3RZUA 1THZA 2RPZA 4GGMX 1MQ0A 3OCQA 4WIGA 2KCQA 1WKQA 1Z3AA 3E1UA 4ILGC 1ALNA 4ZD5A 2G84A 2Z3GA 1OX7A 2NX8A 4LD2A 4HRQA 2NYTA 1PKXA 5C2OA 4MSQA 4OCNA 2HVWA 2O7PA 3DH1A 4LCNA 2FR5A 4MS7A 4OCLA 2PW9A 4OCNB 1CTUA 3RZVA 4WIFA 2O95A 4P9DA 1PL0A 2B1GA 1P4RA 4A1OA 1ZCZA 2OG4A 4O8YB 1UX1A 1VK9A 2HXVA 2QLCA 3G8QA 5DCAJ 1UWZA 1P6OA 4O8XA 4O8XB 4LD4A 1WN5A 2ZNVA 3ZPGA 4J6EA 1M9NA 2FR6A 4PQTA 4G3MA 4MSDA 4I43B 4HRWA 4OCMA 1RB7A 4OCLB 2O3KA 1JTKA 4OCMB 4P9EA 4F3WA 2HVVA 1OZ0A 3ZZMA 3R2NA 4ZFRA 2Z3HA 3MPZA 3ZPCA 2P87A 4ZD4A 1UX0A 2ZNRA 4ZFTA 3IJFX 1R5TA 4OWPA 2A8NA 2KKSA 1YSBA 3SBGA 1UAQA 3ZEFB 4MSMA 4EG2A 2IU3A 2IU0A 4OWPB 4LC5A 1AF2A 4D10F 3DMOA 2G6VA 2P8RA 2OBCA 4KITC 5CW6A 3B8FA 3OJ6A 4F7OA 2Z3JA 1OI0A 4NQLA 1TIYA 4LCPA 4BGDC 3VX8A 4EHIA 4JXEA 4MSJA 2B3JA 5M52C 2B3ZA 4K1RA 2W4LA 1WWRA 4LCOA
chains in the Genus database with same CATH topology
2D5NA 1YSDA 3EX8A 5M59B 4E0QA 1CTTA 1R5XA 4P9CA 1ZABA 2O96A 1WN6A 2Z3IA 2D30A 1VQ2A 4O8YA 4QFTA 5GAOA 3RZUA 2RPZA 1MQ0A 3OCQA 4WIGA 2KCQA 1WKQA 1Z3AA 3E1UA 4ILGC 1ALNA 4ZD5A 2G84A 2Z3GA 1OX7A 2NX8A 4LD2A 4HRQA 2NYTA 5C2OA 4MSQA 4OCNA 2HVWA 2O7PA 3DH1A 4LCNA 2FR5A 4MS7A 4OCLA 2PW9A 4OCNB 1CTUA 3RZVA 4WIFA 2O95A 4P9DA 2OG4A 4O8YB 1UX1A 5DCAJ 2HXVA 2QLCA 3G8QA 1UWZA 1P6OA 4O8XA 4O8XB 4LD4A 1WN5A 2ZNVA 3ZPGA 2FR6A 4PQTA 4G3MA 4MSDA 4I43B 4HRWA 4OCMA 1RB7A 4OCLB 2O3KA 1JTKA 4OCMB 4P9EA 4F3WA 2HVVA 3R2NA 4ZFRA 2Z3HA 3MPZA 3ZPCA 2P87A 4ZD4A 1UX0A 2ZNRA 4ZFTA 3IJFX 1R5TA 4OWPA 2A8NA 2KKSA 1YSBA 3SBGA 1UAQA 3ZEFB 4MSMA 4EG2A 4OWPB 4LC5A 1AF2A 4D10F 3DMOA 2G6VA 2P8RA 2OBCA 4KITC 5CW6A 3B8FA 3OJ6A 4F7OA 2Z3JA 1OI0A 4NQLA 1TIYA 4LCPA 4BGDC 4JXEA 4MSJA 2B3JA 5M52C 2B3ZA 4K1RA 2W4LA 1WWRA 4LCOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D5N A;  1YSD A;  3EX8 A;  5M59 B;  4E0Q A;  1CTT A;  1R5X A;  4P9C A;  1ZAB A;  2O96 A;  1WN6 A;  2Z3I A;  2D30 A;  1VQ2 A;  4O8Y A;  4QFT A;  5GAO A;  3RZU A;  2RPZ A;  1MQ0 A;  3OCQ A;  4WIG A;  2KCQ A;  1WKQ A;  1Z3A A;  3E1U A;  4ILG C;  1ALN A;  4ZD5 A;  2G84 A;  2Z3G A;  1OX7 A;  2NX8 A;  4LD2 A;  4HRQ A;  2NYT A;  5C2O A;  4MSQ A;  4OCN A;  2HVW A;  2O7P A;  3DH1 A;  4LCN A;  2FR5 A;  4MS7 A;  4OCL A;  2PW9 A;  4OCN B;  1CTU A;  3RZV A;  4WIF A;  2O95 A;  4P9D A;  2OG4 A;  4O8Y B;  1UX1 A;  5DCA J;  2HXV A;  2QLC A;  3G8Q A;  1UWZ A;  1P6O A;  4O8X A;  4O8X B;  4LD4 A;  1WN5 A;  2ZNV A;  3ZPG A;  2FR6 A;  4PQT A;  4G3M A;  4MSD A;  4I43 B;  4HRW A;  4OCM A;  1RB7 A;  4OCL B;  2O3K A;  1JTK A;  4OCM B;  4P9E A;  4F3W A;  2HVV A;  3R2N A;  4ZFR A;  2Z3H A;  3MPZ A;  3ZPC A;  2P87 A;  4ZD4 A;  1UX0 A;  2ZNR A;  4ZFT A;  3IJF X;  1R5T A;  4OWP A;  2A8N A;  2KKS A;  1YSB A;  3SBG A;  1UAQ A;  3ZEF B;  4MSM A;  4EG2 A;  4OWP B;  4LC5 A;  1AF2 A;  4D10 F;  3DMO A;  2G6V A;  2P8R A;  2OBC A;  4KIT C;  5CW6 A;  3B8F A;  3OJ6 A;  4F7O A;  2Z3J A;  1OI0 A;  4NQL A;  1TIY A;  4LCP A;  4BGD C;  4JXE A;  4MSJ A;  2B3J A;  5M52 C;  2B3Z A;  4K1R A;  2W4L A;  1WWR A;  4LCO A; 
#chains in the Genus database with same CATH topology
 1G8M A;  2D5N A;  1YSD A;  3EX8 A;  5M59 B;  4E0Q A;  1CTT A;  1R5X A;  4P9C A;  1ZAB A;  2O96 A;  1WN6 A;  2Z3I A;  2D30 A;  1VQ2 A;  3BH1 A;  2B1I A;  4O8Y A;  4QFT A;  5GAO A;  3RZU A;  1THZ A;  2RPZ A;  4GGM X;  1MQ0 A;  3OCQ A;  4WIG A;  2KCQ A;  1WKQ A;  1Z3A A;  3E1U A;  4ILG C;  1ALN A;  4ZD5 A;  2G84 A;  2Z3G A;  1OX7 A;  2NX8 A;  4LD2 A;  4HRQ A;  2NYT A;  1PKX A;  5C2O A;  4MSQ A;  4OCN A;  2HVW A;  2O7P A;  3DH1 A;  4LCN A;  2FR5 A;  4MS7 A;  4OCL A;  2PW9 A;  4OCN B;  1CTU A;  3RZV A;  4WIF A;  2O95 A;  4P9D A;  1PL0 A;  2B1G A;  1P4R A;  4A1O A;  1ZCZ A;  2OG4 A;  4O8Y B;  1UX1 A;  1VK9 A;  2HXV A;  2QLC A;  3G8Q A;  5DCA J;  1UWZ A;  1P6O A;  4O8X A;  4O8X B;  4LD4 A;  1WN5 A;  2ZNV A;  3ZPG A;  4J6E A;  1M9N A;  2FR6 A;  4PQT A;  4G3M A;  4MSD A;  4I43 B;  4HRW A;  4OCM A;  1RB7 A;  4OCL B;  2O3K A;  1JTK A;  4OCM B;  4P9E A;  4F3W A;  2HVV A;  1OZ0 A;  3ZZM A;  3R2N A;  4ZFR A;  2Z3H A;  3MPZ A;  3ZPC A;  2P87 A;  4ZD4 A;  1UX0 A;  2ZNR A;  4ZFT A;  3IJF X;  1R5T A;  4OWP A;  2A8N A;  2KKS A;  1YSB A;  3SBG A;  1UAQ A;  3ZEF B;  4MSM A;  4EG2 A;  2IU3 A;  2IU0 A;  4OWP B;  4LC5 A;  1AF2 A;  4D10 F;  3DMO A;  2G6V A;  2P8R A;  2OBC A;  4KIT C;  5CW6 A;  3B8F A;  3OJ6 A;  4F7O A;  2Z3J A;  1OI0 A;  4NQL A;  1TIY A;  4LCP A;  4BGD C;  3VX8 A;  4EHI A;  4JXE A;  4MSJ A;  2B3J A;  5M52 C;  2B3Z A;  4K1R A;  2W4L A;  1WWR A;  4LCO A; 
#chains in the Genus database with same CATH homology
 2D5N A;  1YSD A;  3EX8 A;  5M59 B;  4E0Q A;  1CTT A;  1R5X A;  4P9C A;  1ZAB A;  2O96 A;  1WN6 A;  2Z3I A;  2D30 A;  1VQ2 A;  4O8Y A;  4QFT A;  5GAO A;  3RZU A;  2RPZ A;  1MQ0 A;  3OCQ A;  4WIG A;  2KCQ A;  1WKQ A;  1Z3A A;  3E1U A;  4ILG C;  1ALN A;  4ZD5 A;  2G84 A;  2Z3G A;  1OX7 A;  2NX8 A;  4LD2 A;  4HRQ A;  2NYT A;  5C2O A;  4MSQ A;  4OCN A;  2HVW A;  2O7P A;  3DH1 A;  4LCN A;  2FR5 A;  4MS7 A;  4OCL A;  2PW9 A;  4OCN B;  1CTU A;  3RZV A;  4WIF A;  2O95 A;  4P9D A;  2OG4 A;  4O8Y B;  1UX1 A;  5DCA J;  2HXV A;  2QLC A;  3G8Q A;  1UWZ A;  1P6O A;  4O8X A;  4O8X B;  4LD4 A;  1WN5 A;  2ZNV A;  3ZPG A;  2FR6 A;  4PQT A;  4G3M A;  4MSD A;  4I43 B;  4HRW A;  4OCM A;  1RB7 A;  4OCL B;  2O3K A;  1JTK A;  4OCM B;  4P9E A;  4F3W A;  2HVV A;  3R2N A;  4ZFR A;  2Z3H A;  3MPZ A;  3ZPC A;  2P87 A;  4ZD4 A;  1UX0 A;  2ZNR A;  4ZFT A;  3IJF X;  1R5T A;  4OWP A;  2A8N A;  2KKS A;  1YSB A;  3SBG A;  1UAQ A;  3ZEF B;  4MSM A;  4EG2 A;  4OWP B;  4LC5 A;  1AF2 A;  4D10 F;  3DMO A;  2G6V A;  2P8R A;  2OBC A;  4KIT C;  5CW6 A;  3B8F A;  3OJ6 A;  4F7O A;  2Z3J A;  1OI0 A;  4NQL A;  1TIY A;  4LCP A;  4BGD C;  4JXE A;  4MSJ A;  2B3J A;  5M52 C;  2B3Z A;  4K1R A;  2W4L A;  1WWR A;  4LCO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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