2D49A

Solution structure of the chitin-binding domain of streptomyces griseus chitinase c
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
53
structure length
53
Chain Sequence
ATCATAWSSSSVYTNGGTVSYNGRNYTAKWWTQNERPGTSDVWADKGACGTGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords chitinase C
publication title Identification of the substrate interaction region of the chitin-binding domain of Streptomyces griseus chitinase C
pubmed doi rcsb
source organism Streptomyces griseus
total genus 5
structure length 53
sequence length 53
ec nomenclature ec 3.2.1.14: Chitinase.
pdb deposition date 2005-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02839 CBM_5_12 Carbohydrate binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.20 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Carbohydrate-binding module superfamily 5/12 2d49A00
4Z2IA 1AIWA 3WD3A 1ED7A 1E6NA 1OGGA 4MB5A 1W1YA 3WD4A 3WD2A 1OGBA 2D49A 4Z2HA 4Z2GA 4Z2LA 3WD1A 3WD0A 2RTSA 1UR8A 4HMCA 1W1TA 1O6IA 1W1VA 4Z2KA 4HMDA 1E6PA 4HMEA 4TX8A 1H0IA 1H0GA 1UR9A 1E15A 1E6RA 1W1PA 1GOIA 4MB3A 1E6ZA 4Z2JA 4MB4A 1GPFA
chains in the Genus database with same CATH superfamily
4LG2A 2Y2QA 3WD3A 3L2AA 1GXDA 2Y2OA 3WD4A 1OGBA 2Y2NA 1PDCA 2FFFB 2JE5A 2XD1A 3L27A 4HMCA 1O6IA 4HMEA 1J7MA 1H0IA 1H0GA 4IJEA 1E6RA 4OJOA 3WX7A 1GOIA 4IBFA 4IBEA 4MB4A 2Y2JA 4GH9A 4OJLA 1ED7A 3KS4A 4IJFA 1E6NA 1OGGA 4NZ1A 4GHAA 4IBBA 3N3FA 2D49A 4Z2HA 4Z2GA 4Z2LA 1KS0A 2RTSA 3L26A 4IBDA 1E88A 2FN2A 2IOUA 1W1TA 1W1VA 2Y2HA 3M7PA 4IBIA 3L25A 4TX8A 1CK7A 2BG1A 4OJ6A 1CXWA 1UR9A 2Y2PA 1YU2A 1E6ZA 4NYYA 2Y2KA 2XD5A 1E8BA 1AIWA 4NYUA 3L28A 2V5OA 4MB5A 1YU1A 2Y2LA 1QO6A 3WD2A 4NZ4A 4NZ5A 5BPVA 1L6JA 1UR8A 4QNLA 4IBGA 4Z2KA 1YUEA 3MQLA 1E6PA 4NY2A 2Y2MA 4IBKA 3L29A 2JCHA 1E15A 1W1PA 4MB3A 4Z2JA 1YU4A 4Z2IA 1GPFA 2UWXA 4NZ3A 4OJPA 4IBJA 2Y2GA 1W1YA 3WD1A 3WD0A 4IBCA 4OUIA 1YU0A 4OJ5A 1H8PA 3HONA 4HMDA 2Y2IA 3KS8A 4GHLA 1YU3A 3FKEA 3HSHA 1EAKA
chains in the Genus database with same CATH topology
4Z2IA 1AIWA 3WD3A 1ED7A 1E6NA 1OGGA 4MB5A 1W1YA 3WD4A 3WD2A 1OGBA 2D49A 4Z2HA 4Z2GA 4Z2LA 3WD1A 3WD0A 2RTSA 1UR8A 4HMCA 1W1TA 1O6IA 1W1VA 4Z2KA 4HMDA 1E6PA 4HMEA 4TX8A 1H0IA 1H0GA 1UR9A 1E15A 1E6RA 1W1PA 1GOIA 4MB3A 1E6ZA 4Z2JA 4MB4A 1GPFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z2I A;  1AIW A;  3WD3 A;  1ED7 A;  1E6N A;  1OGG A;  4MB5 A;  1W1Y A;  3WD4 A;  3WD2 A;  1OGB A;  2D49 A;  4Z2H A;  4Z2G A;  4Z2L A;  3WD1 A;  3WD0 A;  2RTS A;  1UR8 A;  4HMC A;  1W1T A;  1O6I A;  1W1V A;  4Z2K A;  4HMD A;  1E6P A;  4HME A;  4TX8 A;  1H0I A;  1H0G A;  1UR9 A;  1E15 A;  1E6R A;  1W1P A;  1GOI A;  4MB3 A;  1E6Z A;  4Z2J A;  4MB4 A;  1GPF A; 
#chains in the Genus database with same CATH topology
 4LG2 A;  2Y2Q A;  3WD3 A;  3L2A A;  1GXD A;  2Y2O A;  3WD4 A;  1OGB A;  2Y2N A;  1PDC A;  2FFF B;  2JE5 A;  2XD1 A;  3L27 A;  4HMC A;  1O6I A;  4HME A;  1J7M A;  1H0I A;  1H0G A;  4IJE A;  1E6R A;  4OJO A;  3WX7 A;  1GOI A;  4IBF A;  4IBE A;  4MB4 A;  2Y2J A;  4GH9 A;  4OJL A;  1ED7 A;  3KS4 A;  4IJF A;  1E6N A;  1OGG A;  4NZ1 A;  4GHA A;  4IBB A;  3N3F A;  2D49 A;  4Z2H A;  4Z2G A;  4Z2L A;  1KS0 A;  2RTS A;  3L26 A;  4IBD A;  1E88 A;  2FN2 A;  2IOU A;  1W1T A;  1W1V A;  2Y2H A;  3M7P A;  4IBI A;  3L25 A;  4TX8 A;  1CK7 A;  2BG1 A;  4OJ6 A;  1CXW A;  1UR9 A;  2Y2P A;  1YU2 A;  1E6Z A;  4NYY A;  2Y2K A;  2XD5 A;  1E8B A;  1AIW A;  4NYU A;  3L28 A;  2V5O A;  4MB5 A;  1YU1 A;  2Y2L A;  1QO6 A;  3WD2 A;  4NZ4 A;  4NZ5 A;  5BPV A;  1L6J A;  1UR8 A;  4QNL A;  4IBG A;  4Z2K A;  1YUE A;  3MQL A;  1E6P A;  4NY2 A;  2Y2M A;  4IBK A;  3L29 A;  2JCH A;  1E15 A;  1W1P A;  4MB3 A;  4Z2J A;  1YU4 A;  4Z2I A;  1GPF A;  2UWX A;  4NZ3 A;  4OJP A;  4IBJ A;  2Y2G A;  1W1Y A;  3WD1 A;  3WD0 A;  4IBC A;  4OUI A;  1YU0 A;  4OJ5 A;  1H8P A;  3HON A;  4HMD A;  2Y2I A;  3KS8 A;  4GHL A;  1YU3 A;  3FKE A;  3HSH A;  1EAK A; 
#chains in the Genus database with same CATH homology
 4Z2I A;  1AIW A;  3WD3 A;  1ED7 A;  1E6N A;  1OGG A;  4MB5 A;  1W1Y A;  3WD4 A;  3WD2 A;  1OGB A;  2D49 A;  4Z2H A;  4Z2G A;  4Z2L A;  3WD1 A;  3WD0 A;  2RTS A;  1UR8 A;  4HMC A;  1W1T A;  1O6I A;  1W1V A;  4Z2K A;  4HMD A;  1E6P A;  4HME A;  4TX8 A;  1H0I A;  1H0G A;  1UR9 A;  1E15 A;  1E6R A;  1W1P A;  1GOI A;  4MB3 A;  1E6Z A;  4Z2J A;  4MB4 A;  1GPF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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