2D4XA

Crystal structure of a 26k fragment of hap3 (flgl)
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
214
structure length
214
Chain Sequence
VVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Flagellar hook-associated protein 3
publication title Structure of the bacterial flagellar hook-filament junction
rcsb
source organism Salmonella typhimurium
total genus 80
structure length 214
sequence length 214
ec nomenclature
pdb deposition date 2005-10-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1330.10 Mainly Alpha Up-down Bundle f41 fragment of flagellin, N-terminal domain f41 fragment of flagellin, N-terminal domain 2d4xA00
3K8WA 4NX9A 5KAYA 1UCUA 2D4XA 3A5XA 3V47C 4CFIA 3PWXA 2ZBIA 1IO1A 3K8VA
chains in the Genus database with same CATH superfamily
3K8WA 4NX9A 5KAYA 1UCUA 2D4XA 3A5XA 3V47C 4CFIA 3PWXA 2ZBIA 1IO1A 3K8VA
chains in the Genus database with same CATH topology
3K8WA 4NX9A 5KAYA 1UCUA 2D4XA 3A5XA 3V47C 4CFIA 3PWXA 2ZBIA 1IO1A 3K8VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K8W A;  4NX9 A;  5KAY A;  1UCU A;  2D4X A;  3A5X A;  3V47 C;  4CFI A;  3PWX A;  2ZBI A;  1IO1 A;  3K8V A; 
#chains in the Genus database with same CATH topology
 3K8W A;  4NX9 A;  5KAY A;  1UCU A;  2D4X A;  3A5X A;  3V47 C;  4CFI A;  3PWX A;  2ZBI A;  1IO1 A;  3K8V A; 
#chains in the Genus database with same CATH homology
 3K8W A;  4NX9 A;  5KAY A;  1UCU A;  2D4X A;  3A5X A;  3V47 C;  4CFI A;  3PWX A;  2ZBI A;  1IO1 A;  3K8V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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