2D85A

Solution structure of the fourth ch domain from human l-plastin
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
124
structure length
124
Chain Sequence
GSSGSSGNDDIIVNWVNETLREAEKSSSISSFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLNDDEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKRVSGPSSG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural protein, protein binding
molecule keywords L-plastin
publication title Solution structure of the fourth CH domain from human L-plastin
rcsb
source organism Homo sapiens
total genus 27
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2005-12-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2d85A01
1WIXA 1SH5A 2DK9A 4TXKA 1WJOA 1WYMA 3KMUB 1TJTA 3F7PA 2VZIB 3HORA 4EDMA 2EYIA 1PA7A 2D86A 1BHDA 1H67A 1WYQA 2E9KA 2WA5A 1AA2A 2L3GA 1SH6A 3I6XA 1BKRA 1WYRA 1WYPA 1RT8A 2R8UA 2EE7A 1MB8A 3JAKM 1WKUA 5A36A 2D85A 1WYNA 5J8EA 3HOCA 4Q58A 2D88A 4EDLA 2WA6A 1DXXA 4Q57B 3JALM 5A4BA 2RR8A 5BVRA 2VZGB 4Q59A 3FERA 2VZDA 1UJOA 5L0OA 1WYOA 2WA7A 2QJXA 3HOPA 4B7LA 4TXIA 1V5KA 2QJZA 3CO1A 1AOAA 2D89A 2K2RA 3REPB 2JV9A 5A37A 1VKAA 2EYNA 4EDNA 1PXYA 1P5SA 3KY9A 1UEGA 2YRNA 2VZCA 2D87A 5A38A 1QAGA 3JARM 2R0OA 3KMWB 2K3SA 1P2XA 1WYLA 2WFNA
chains in the Genus database with same CATH superfamily
1WIXA 1SH5A 2DK9A 4TXKA 1WJOA 1WYMA 3KMUB 1TJTA 3F7PA 2VZIB 3HORA 4EDMA 2EYIA 1PA7A 2D86A 1BHDA 1H67A 1WYQA 2E9KA 2WA5A 2EQOA 1AA2A 2L3GA 1SH6A 2WDTA 3I6XA 1BKRA 2WE6A 1WYRA 1WYPA 1RT8A 2R8UA 2EE7A 2HL8A 1MB8A 3JAKM 1WKUA 5A36A 2D85A 4DDPA 1WYNA 5J8EA 3HOCA 4Q58A 2D88A 4EDLA 2WA6A 1EUVA 2IGPA 1DXXA 4Q57B 3JALM 5A4BA 4LVPA 2RR8A 5BVRA 2VZGB 4Q59A 3FERA 2VE7C 2VZDA 1UJOA 2HL9A 5L0OA 1WYOA 2WA7A 2QJXA 3HOPA 3VP7A 4B7LA 4TXIA 1V5KA 2QJZA 3CO1A 2HKPA 1AOAA 2D89A 2K2RA 3REPB 2JV9A 4LVRA 5A37A 1VKAA 2EYNA 4EDNA 3EAYA 5FMUA 1PXYA 1P5SA 2VE7A 1UEGA 2YRNA 2VZCA 2D87A 3KY9A 5A38A 1QAGA 3JARM 5FMTA 2R0OA 3KMWB 2K3SA 1P2XA 1WYLA 2WFNA
chains in the Genus database with same CATH topology
1WIXA 1SH5A 2DK9A 4TXKA 1WJOA 1WYMA 3KMUB 1TJTA 3F7PA 2VZIB 3HORA 4EDMA 2EYIA 1PA7A 2D86A 1BHDA 1H67A 1WYQA 2E9KA 2WA5A 1AA2A 2L3GA 1SH6A 3I6XA 1BKRA 1WYRA 1WYPA 1RT8A 2R8UA 2EE7A 1MB8A 3JAKM 1WKUA 5A36A 2D85A 1WYNA 5J8EA 3HOCA 4Q58A 2D88A 4EDLA 2WA6A 1DXXA 4Q57B 3JALM 5A4BA 2RR8A 5BVRA 2VZGB 4Q59A 3FERA 2VZDA 1UJOA 5L0OA 1WYOA 2WA7A 2QJXA 3HOPA 4B7LA 4TXIA 1V5KA 2QJZA 3CO1A 1AOAA 2D89A 2K2RA 3REPB 2JV9A 5A37A 1VKAA 2EYNA 4EDNA 1PXYA 1P5SA 3KY9A 1UEGA 2YRNA 2VZCA 2D87A 5A38A 1QAGA 3JARM 2R0OA 3KMWB 2K3SA 1P2XA 1WYLA 2WFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WIX A;  1SH5 A;  2DK9 A;  4TXK A;  1WJO A;  1WYM A;  3KMU B;  1TJT A;  3F7P A;  2VZI B;  3HOR A;  4EDM A;  2EYI A;  1PA7 A;  2D86 A;  1BHD A;  1H67 A;  1WYQ A;  2E9K A;  2WA5 A;  1AA2 A;  2L3G A;  1SH6 A;  3I6X A;  1BKR A;  1WYR A;  1WYP A;  1RT8 A;  2R8U A;  2EE7 A;  1MB8 A;  3JAK M;  1WKU A;  5A36 A;  2D85 A;  1WYN A;  5J8E A;  3HOC A;  4Q58 A;  2D88 A;  4EDL A;  2WA6 A;  1DXX A;  4Q57 B;  3JAL M;  5A4B A;  2RR8 A;  5BVR A;  2VZG B;  4Q59 A;  3FER A;  2VZD A;  1UJO A;  5L0O A;  1WYO A;  2WA7 A;  2QJX A;  3HOP A;  4B7L A;  4TXI A;  1V5K A;  2QJZ A;  3CO1 A;  1AOA A;  2D89 A;  2K2R A;  3REP B;  2JV9 A;  5A37 A;  1VKA A;  2EYN A;  4EDN A;  1PXY A;  1P5S A;  3KY9 A;  1UEG A;  2YRN A;  2VZC A;  2D87 A;  5A38 A;  1QAG A;  3JAR M;  2R0O A;  3KMW B;  2K3S A;  1P2X A;  1WYL A;  2WFN A; 
#chains in the Genus database with same CATH topology
 1WIX A;  1SH5 A;  2DK9 A;  4TXK A;  1WJO A;  1WYM A;  3KMU B;  1TJT A;  3F7P A;  2VZI B;  3HOR A;  4EDM A;  2EYI A;  1PA7 A;  2D86 A;  1BHD A;  1H67 A;  1WYQ A;  2E9K A;  2WA5 A;  2EQO A;  1AA2 A;  2L3G A;  1SH6 A;  2WDT A;  3I6X A;  1BKR A;  2WE6 A;  1WYR A;  1WYP A;  1RT8 A;  2R8U A;  2EE7 A;  2HL8 A;  1MB8 A;  3JAK M;  1WKU A;  5A36 A;  2D85 A;  4DDP A;  1WYN A;  5J8E A;  3HOC A;  4Q58 A;  2D88 A;  4EDL A;  2WA6 A;  1EUV A;  2IGP A;  1DXX A;  4Q57 B;  3JAL M;  5A4B A;  4LVP A;  2RR8 A;  5BVR A;  2VZG B;  4Q59 A;  3FER A;  2VE7 C;  2VZD A;  1UJO A;  2HL9 A;  5L0O A;  1WYO A;  2WA7 A;  2QJX A;  3HOP A;  3VP7 A;  4B7L A;  4TXI A;  1V5K A;  2QJZ A;  3CO1 A;  2HKP A;  1AOA A;  2D89 A;  2K2R A;  3REP B;  2JV9 A;  4LVR A;  5A37 A;  1VKA A;  2EYN A;  4EDN A;  3EAY A;  5FMU A;  1PXY A;  1P5S A;  2VE7 A;  1UEG A;  2YRN A;  2VZC A;  2D87 A;  3KY9 A;  5A38 A;  1QAG A;  3JAR M;  5FMT A;  2R0O A;  3KMW B;  2K3S A;  1P2X A;  1WYL A;  2WFN A; 
#chains in the Genus database with same CATH homology
 1WIX A;  1SH5 A;  2DK9 A;  4TXK A;  1WJO A;  1WYM A;  3KMU B;  1TJT A;  3F7P A;  2VZI B;  3HOR A;  4EDM A;  2EYI A;  1PA7 A;  2D86 A;  1BHD A;  1H67 A;  1WYQ A;  2E9K A;  2WA5 A;  1AA2 A;  2L3G A;  1SH6 A;  3I6X A;  1BKR A;  1WYR A;  1WYP A;  1RT8 A;  2R8U A;  2EE7 A;  1MB8 A;  3JAK M;  1WKU A;  5A36 A;  2D85 A;  1WYN A;  5J8E A;  3HOC A;  4Q58 A;  2D88 A;  4EDL A;  2WA6 A;  1DXX A;  4Q57 B;  3JAL M;  5A4B A;  2RR8 A;  5BVR A;  2VZG B;  4Q59 A;  3FER A;  2VZD A;  1UJO A;  5L0O A;  1WYO A;  2WA7 A;  2QJX A;  3HOP A;  4B7L A;  4TXI A;  1V5K A;  2QJZ A;  3CO1 A;  1AOA A;  2D89 A;  2K2R A;  3REP B;  2JV9 A;  5A37 A;  1VKA A;  2EYN A;  4EDN A;  1PXY A;  1P5S A;  3KY9 A;  1UEG A;  2YRN A;  2VZC A;  2D87 A;  5A38 A;  1QAG A;  3JAR M;  2R0O A;  3KMW B;  2K3S A;  1P2X A;  1WYL A;  2WFN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...