2D85A

Solution structure of the fourth ch domain from human l-plastin
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
124
structure length
124
Chain Sequence
GSSGSSGNDDIIVNWVNETLREAEKSSSISSFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLNDDEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKRVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the fourth CH domain from human L-plastin
rcsb
molecule tags Structural protein, protein binding
source organism Homo sapiens
molecule keywords L-plastin
total genus 27
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2005-12-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2d85A01
1P2XA 1QAGA 1UJOA 3CO1A 1DXXA 1MB8A 2R8UA 3I6XA 1WKUA 4Q57B 4TXIA 5A36A 4EDMA 4Q59A 2D89A 1UEGA 1P5SA 1SH6A 1WIXA 1WYPA 2EE7A 1BKRA 3FERA 3KMUB 1AOAA 2WA5A 1WYRA 2QJXA 5A38A 3REPB 5A37A 1RT8A 3F7PA 1WYMA 1WYOA 1VKAA 4B7LA 4TXKA 2VZGB 2RR8A 2WA6A 5BVRA 5J8EA 4EDNA 4Q58A 2K3SA 3HORA 5L0OA 1TJTA 2VZIB 1SH5A 1AA2A 2K2RA 1WYQA 2VZDA 2D87A 3HOPA 1PXYA 1WJOA 3JALM 1WYNA 1H67A 3KMWB 2EYNA 2R0OA 1WYLA 3HOCA 2L3GA 1V5KA 1BHDA 3JAKM 5A4BA 2DK9A 1PA7A 2JV9A 2WFNA 2WA7A 2EYIA 2D88A 2D85A 4EDLA 2YRNA 3JARM 2QJZA 3KY9A 2E9KA 2VZCA 2D86A
chains in the Genus database with same CATH superfamily
5FMUA 1P2XA 1QAGA 1UJOA 3CO1A 1DXXA 1MB8A 2R8UA 3I6XA 4DDPA 1WKUA 4Q57B 4TXIA 5A36A 4EDMA 4Q59A 2D89A 1UEGA 1P5SA 1SH6A 1WIXA 1WYPA 2EE7A 2WE6A 2VE7C 1BKRA 3FERA 3KMUB 2EQOA 4LVRA 1AOAA 2WA5A 1WYRA 2QJXA 5A38A 3REPB 2HL8A 5A37A 1RT8A 2WDTA 2HL9A 1WYMA 3F7PA 1WYOA 1VKAA 4LVPA 4B7LA 4TXKA 2VZGB 2RR8A 2WA6A 5BVRA 5J8EA 4EDNA 4Q58A 2K3SA 3HORA 5L0OA 1TJTA 2VZIB 2IGPA 1SH5A 1AA2A 2K2RA 1WYQA 2VZDA 2D87A 3HOPA 1PXYA 1EUVA 1WJOA 3JALM 1WYNA 1H67A 3KMWB 2EYNA 2R0OA 1WYLA 3EAYA 3HOCA 2L3GA 1V5KA 2HKPA 1BHDA 3JAKM 5A4BA 2DK9A 1PA7A 2JV9A 2WFNA 2WA7A 2EYIA 2D88A 2D85A 4EDLA 2YRNA 3JARM 5FMTA 3VP7A 2QJZA 2VE7A 3KY9A 2E9KA 2VZCA 2D86A
chains in the Genus database with same CATH topology
1P2XA 1QAGA 1UJOA 3CO1A 1DXXA 1MB8A 2R8UA 3I6XA 1WKUA 4Q57B 4TXIA 5A36A 4EDMA 4Q59A 2D89A 1UEGA 1P5SA 1SH6A 1WIXA 1WYPA 2EE7A 1BKRA 3FERA 3KMUB 1AOAA 2WA5A 1WYRA 2QJXA 5A38A 3REPB 5A37A 1RT8A 3F7PA 1WYMA 1WYOA 1VKAA 4B7LA 4TXKA 2VZGB 2RR8A 2WA6A 5BVRA 5J8EA 4EDNA 4Q58A 2K3SA 3HORA 5L0OA 1TJTA 2VZIB 1SH5A 1AA2A 2K2RA 1WYQA 2VZDA 2D87A 3HOPA 1PXYA 1WJOA 3JALM 1WYNA 1H67A 3KMWB 2EYNA 2R0OA 1WYLA 3HOCA 2L3GA 1V5KA 1BHDA 3JAKM 5A4BA 2DK9A 1PA7A 2JV9A 2WFNA 2WA7A 2EYIA 2D88A 2D85A 4EDLA 2YRNA 3JARM 2QJZA 3KY9A 2E9KA 2VZCA 2D86A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P2X A;  1QAG A;  1UJO A;  3CO1 A;  1DXX A;  1MB8 A;  2R8U A;  3I6X A;  1WKU A;  4Q57 B;  4TXI A;  5A36 A;  4EDM A;  4Q59 A;  2D89 A;  1UEG A;  1P5S A;  1SH6 A;  1WIX A;  1WYP A;  2EE7 A;  1BKR A;  3FER A;  3KMU B;  1AOA A;  2WA5 A;  1WYR A;  2QJX A;  5A38 A;  3REP B;  5A37 A;  1RT8 A;  3F7P A;  1WYM A;  1WYO A;  1VKA A;  4B7L A;  4TXK A;  2VZG B;  2RR8 A;  2WA6 A;  5BVR A;  5J8E A;  4EDN A;  4Q58 A;  2K3S A;  3HOR A;  5L0O A;  1TJT A;  2VZI B;  1SH5 A;  1AA2 A;  2K2R A;  1WYQ A;  2VZD A;  2D87 A;  3HOP A;  1PXY A;  1WJO A;  3JAL M;  1WYN A;  1H67 A;  3KMW B;  2EYN A;  2R0O A;  1WYL A;  3HOC A;  2L3G A;  1V5K A;  1BHD A;  3JAK M;  5A4B A;  2DK9 A;  1PA7 A;  2JV9 A;  2WFN A;  2WA7 A;  2EYI A;  2D88 A;  2D85 A;  4EDL A;  2YRN A;  3JAR M;  2QJZ A;  3KY9 A;  2E9K A;  2VZC A;  2D86 A; 
#chains in the Genus database with same CATH topology
 5FMU A;  1P2X A;  1QAG A;  1UJO A;  3CO1 A;  1DXX A;  1MB8 A;  2R8U A;  3I6X A;  4DDP A;  1WKU A;  4Q57 B;  4TXI A;  5A36 A;  4EDM A;  4Q59 A;  2D89 A;  1UEG A;  1P5S A;  1SH6 A;  1WIX A;  1WYP A;  2EE7 A;  2WE6 A;  2VE7 C;  1BKR A;  3FER A;  3KMU B;  2EQO A;  4LVR A;  1AOA A;  2WA5 A;  1WYR A;  2QJX A;  5A38 A;  3REP B;  2HL8 A;  5A37 A;  1RT8 A;  2WDT A;  2HL9 A;  1WYM A;  3F7P A;  1WYO A;  1VKA A;  4LVP A;  4B7L A;  4TXK A;  2VZG B;  2RR8 A;  2WA6 A;  5BVR A;  5J8E A;  4EDN A;  4Q58 A;  2K3S A;  3HOR A;  5L0O A;  1TJT A;  2VZI B;  2IGP A;  1SH5 A;  1AA2 A;  2K2R A;  1WYQ A;  2VZD A;  2D87 A;  3HOP A;  1PXY A;  1EUV A;  1WJO A;  3JAL M;  1WYN A;  1H67 A;  3KMW B;  2EYN A;  2R0O A;  1WYL A;  3EAY A;  3HOC A;  2L3G A;  1V5K A;  2HKP A;  1BHD A;  3JAK M;  5A4B A;  2DK9 A;  1PA7 A;  2JV9 A;  2WFN A;  2WA7 A;  2EYI A;  2D88 A;  2D85 A;  4EDL A;  2YRN A;  3JAR M;  5FMT A;  3VP7 A;  2QJZ A;  2VE7 A;  3KY9 A;  2E9K A;  2VZC A;  2D86 A; 
#chains in the Genus database with same CATH homology
 1P2X A;  1QAG A;  1UJO A;  3CO1 A;  1DXX A;  1MB8 A;  2R8U A;  3I6X A;  1WKU A;  4Q57 B;  4TXI A;  5A36 A;  4EDM A;  4Q59 A;  2D89 A;  1UEG A;  1P5S A;  1SH6 A;  1WIX A;  1WYP A;  2EE7 A;  1BKR A;  3FER A;  3KMU B;  1AOA A;  2WA5 A;  1WYR A;  2QJX A;  5A38 A;  3REP B;  5A37 A;  1RT8 A;  3F7P A;  1WYM A;  1WYO A;  1VKA A;  4B7L A;  4TXK A;  2VZG B;  2RR8 A;  2WA6 A;  5BVR A;  5J8E A;  4EDN A;  4Q58 A;  2K3S A;  3HOR A;  5L0O A;  1TJT A;  2VZI B;  1SH5 A;  1AA2 A;  2K2R A;  1WYQ A;  2VZD A;  2D87 A;  3HOP A;  1PXY A;  1WJO A;  3JAL M;  1WYN A;  1H67 A;  3KMW B;  2EYN A;  2R0O A;  1WYL A;  3HOC A;  2L3G A;  1V5K A;  1BHD A;  3JAK M;  5A4B A;  2DK9 A;  1PA7 A;  2JV9 A;  2WFN A;  2WA7 A;  2EYI A;  2D88 A;  2D85 A;  4EDL A;  2YRN A;  3JAR M;  2QJZ A;  3KY9 A;  2E9K A;  2VZC A;  2D86 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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