2D88A

Solution structure of the ch domain from human mical-3 protein
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
121
structure length
121
Chain Sequence
GSSGSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein, protein binding
molecule keywords Protein MICAL-3
publication title Solution structure of the CH domain from human MICAL-3 protein
rcsb
source organism Homo sapiens
total genus 21
structure length 121
sequence length 121
ec nomenclature ec 1.14.13.225: F-actin monooxygenase.
pdb deposition date 2005-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2d88A01
3HOCA 3JALM 4Q57B 3CO1A 5A36A 2QJXA 5A37A 2VZGB 2WA6A 1WYNA 1PXYA 5L0OA 2WA5A 1DXXA 1P5SA 1MB8A 3KMUB 3FERA 1SH6A 1RT8A 2L3GA 4EDNA 1TJTA 1BKRA 2R0OA 2WFNA 2D89A 2VZCA 4TXIA 2YRNA 4EDMA 5A38A 1UJOA 5J8EA 2QJZA 1WYOA 3KMWB 1WYQA 2WA7A 2DK9A 4B7LA 2JV9A 2EYNA 1QAGA 3HOPA 2VZIB 2EE7A 3REPB 1WYMA 2R8UA 2EYIA 1SH5A 2D85A 1H67A 2D87A 3JAKM 2RR8A 1AOAA 1WYRA 4EDLA 1WJOA 3I6XA 1WYLA 1UEGA 2D88A 1AA2A 3KY9A 2E9KA 1VKAA 1WIXA 2K3SA 5A4BA 4TXKA 5BVRA 3HORA 2VZDA 4Q59A 1WKUA 3JARM 3F7PA 1WYPA 1BHDA 4Q58A 2K2RA 1V5KA 1P2XA 1PA7A 2D86A
chains in the Genus database with same CATH superfamily
3HOCA 3JALM 4Q57B 2EQOA 3CO1A 5A36A 2QJXA 5A37A 2VZGB 2WA6A 1EUVA 1WYNA 1PXYA 5L0OA 2WA5A 2WDTA 1DXXA 1P5SA 1MB8A 3KMUB 3FERA 1SH6A 1RT8A 2L3GA 4EDNA 1TJTA 1BKRA 2R0OA 2VE7A 2WFNA 2D89A 2VZCA 2VE7C 4TXIA 2YRNA 4EDMA 5A38A 1UJOA 5J8EA 2QJZA 1WYOA 3KMWB 1WYQA 3VP7A 2WA7A 2DK9A 4B7LA 2JV9A 2EYNA 2HL8A 1QAGA 3HOPA 2VZIB 2EE7A 3REPB 1WYMA 2R8UA 2EYIA 1SH5A 2D85A 3EAYA 2HL9A 1H67A 2D87A 2IGPA 3JAKM 2RR8A 1AOAA 2WE6A 1WYRA 4EDLA 1WJOA 3I6XA 5FMUA 4DDPA 1WYLA 1UEGA 2D88A 1AA2A 2HKPA 4LVRA 3KY9A 2E9KA 1VKAA 1WIXA 2K3SA 5A4BA 4TXKA 5FMTA 5BVRA 3HORA 2VZDA 4LVPA 1WKUA 4Q59A 3JARM 3F7PA 1WYPA 1BHDA 4Q58A 2K2RA 1V5KA 1P2XA 1PA7A 2D86A
chains in the Genus database with same CATH topology
3HOCA 3JALM 4Q57B 3CO1A 5A36A 2QJXA 5A37A 2VZGB 2WA6A 1WYNA 1PXYA 5L0OA 2WA5A 1DXXA 1P5SA 1MB8A 3KMUB 3FERA 1SH6A 1RT8A 2L3GA 4EDNA 1TJTA 1BKRA 2R0OA 2WFNA 2D89A 2VZCA 4TXIA 2YRNA 4EDMA 5A38A 1UJOA 5J8EA 2QJZA 1WYOA 3KMWB 1WYQA 2WA7A 2DK9A 4B7LA 2JV9A 2EYNA 1QAGA 3HOPA 2VZIB 2EE7A 3REPB 1WYMA 2R8UA 2EYIA 1SH5A 2D85A 1H67A 2D87A 3JAKM 2RR8A 1AOAA 1WYRA 4EDLA 1WJOA 3I6XA 1WYLA 1UEGA 2D88A 1AA2A 3KY9A 2E9KA 1VKAA 1WIXA 2K3SA 5A4BA 4TXKA 5BVRA 3HORA 2VZDA 4Q59A 1WKUA 3JARM 3F7PA 1WYPA 1BHDA 4Q58A 2K2RA 1V5KA 1P2XA 1PA7A 2D86A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HOC A;  3JAL M;  4Q57 B;  3CO1 A;  5A36 A;  2QJX A;  5A37 A;  2VZG B;  2WA6 A;  1WYN A;  1PXY A;  5L0O A;  2WA5 A;  1DXX A;  1P5S A;  1MB8 A;  3KMU B;  3FER A;  1SH6 A;  1RT8 A;  2L3G A;  4EDN A;  1TJT A;  1BKR A;  2R0O A;  2WFN A;  2D89 A;  2VZC A;  4TXI A;  2YRN A;  4EDM A;  5A38 A;  1UJO A;  5J8E A;  2QJZ A;  1WYO A;  3KMW B;  1WYQ A;  2WA7 A;  2DK9 A;  4B7L A;  2JV9 A;  2EYN A;  1QAG A;  3HOP A;  2VZI B;  2EE7 A;  3REP B;  1WYM A;  2R8U A;  2EYI A;  1SH5 A;  2D85 A;  1H67 A;  2D87 A;  3JAK M;  2RR8 A;  1AOA A;  1WYR A;  4EDL A;  1WJO A;  3I6X A;  1WYL A;  1UEG A;  2D88 A;  1AA2 A;  3KY9 A;  2E9K A;  1VKA A;  1WIX A;  2K3S A;  5A4B A;  4TXK A;  5BVR A;  3HOR A;  2VZD A;  4Q59 A;  1WKU A;  3JAR M;  3F7P A;  1WYP A;  1BHD A;  4Q58 A;  2K2R A;  1V5K A;  1P2X A;  1PA7 A;  2D86 A; 
#chains in the Genus database with same CATH topology
 3HOC A;  3JAL M;  4Q57 B;  2EQO A;  3CO1 A;  5A36 A;  2QJX A;  5A37 A;  2VZG B;  2WA6 A;  1EUV A;  1WYN A;  1PXY A;  5L0O A;  2WA5 A;  2WDT A;  1DXX A;  1P5S A;  1MB8 A;  3KMU B;  3FER A;  1SH6 A;  1RT8 A;  2L3G A;  4EDN A;  1TJT A;  1BKR A;  2R0O A;  2VE7 A;  2WFN A;  2D89 A;  2VZC A;  2VE7 C;  4TXI A;  2YRN A;  4EDM A;  5A38 A;  1UJO A;  5J8E A;  2QJZ A;  1WYO A;  3KMW B;  1WYQ A;  3VP7 A;  2WA7 A;  2DK9 A;  4B7L A;  2JV9 A;  2EYN A;  2HL8 A;  1QAG A;  3HOP A;  2VZI B;  2EE7 A;  3REP B;  1WYM A;  2R8U A;  2EYI A;  1SH5 A;  2D85 A;  3EAY A;  2HL9 A;  1H67 A;  2D87 A;  2IGP A;  3JAK M;  2RR8 A;  1AOA A;  2WE6 A;  1WYR A;  4EDL A;  1WJO A;  3I6X A;  5FMU A;  4DDP A;  1WYL A;  1UEG A;  2D88 A;  1AA2 A;  2HKP A;  4LVR A;  3KY9 A;  2E9K A;  1VKA A;  1WIX A;  2K3S A;  5A4B A;  4TXK A;  5FMT A;  5BVR A;  3HOR A;  2VZD A;  4LVP A;  1WKU A;  4Q59 A;  3JAR M;  3F7P A;  1WYP A;  1BHD A;  4Q58 A;  2K2R A;  1V5K A;  1P2X A;  1PA7 A;  2D86 A; 
#chains in the Genus database with same CATH homology
 3HOC A;  3JAL M;  4Q57 B;  3CO1 A;  5A36 A;  2QJX A;  5A37 A;  2VZG B;  2WA6 A;  1WYN A;  1PXY A;  5L0O A;  2WA5 A;  1DXX A;  1P5S A;  1MB8 A;  3KMU B;  3FER A;  1SH6 A;  1RT8 A;  2L3G A;  4EDN A;  1TJT A;  1BKR A;  2R0O A;  2WFN A;  2D89 A;  2VZC A;  4TXI A;  2YRN A;  4EDM A;  5A38 A;  1UJO A;  5J8E A;  2QJZ A;  1WYO A;  3KMW B;  1WYQ A;  2WA7 A;  2DK9 A;  4B7L A;  2JV9 A;  2EYN A;  1QAG A;  3HOP A;  2VZI B;  2EE7 A;  3REP B;  1WYM A;  2R8U A;  2EYI A;  1SH5 A;  2D85 A;  1H67 A;  2D87 A;  3JAK M;  2RR8 A;  1AOA A;  1WYR A;  4EDL A;  1WJO A;  3I6X A;  1WYL A;  1UEG A;  2D88 A;  1AA2 A;  3KY9 A;  2E9K A;  1VKA A;  1WIX A;  2K3S A;  5A4B A;  4TXK A;  5BVR A;  3HOR A;  2VZD A;  4Q59 A;  1WKU A;  3JAR M;  3F7P A;  1WYP A;  1BHD A;  4Q58 A;  2K2R A;  1V5K A;  1P2X A;  1PA7 A;  2D86 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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