2D8DA

Structure of chorismate mutase (form i) from thermus thermophilus hb8
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
80
structure length
80
Chain Sequence
ERIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEMLAYLTAENPGPFPDETIRKLFKEIFKASL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutas
publication title Structure of Chorismate Mutase from Thermus Thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 32
structure length 80
sequence length 80
chains with identical sequence B
ec nomenclature ec 5.4.99.5: Chorismate mutase.
pdb deposition date 2005-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01817 CM_2 Chorismate mutase type II
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.59.10 Mainly Alpha Up-down Bundle Chorismate Mutase Domain, subunit A Chorismate mutase 2d8dA00
2D8EA 2D8DA 3TFCA 3HGWA 1ECMA 2GTVX 3HGXA 3NVTA 2W1AC 1YBZA 2W19C 2H9CA 3RETA 2QBVA 3REMA 2H9DA 5CKXC 3RMIA 2VKLA
chains in the Genus database with same CATH superfamily
2D8EA 2D8DA 3TFCA 3HGWA 1ECMA 2GTVX 3HGXA 1NI5A 2E21A 3A2KA 3NVTA 2W1AC 1YBZA 2W19C 2H9CA 3RETA 2QBVA 3REMA 2E89A 2H9DA 5CKXC 3RMIA 2VKLA 1WY5A
chains in the Genus database with same CATH topology
2D8EA 2D8DA 3TFCA 3HGWA 1ECMA 2GTVX 3HGXA 3NVTA 2W1AC 1YBZA 2W19C 2H9CA 3RETA 2QBVA 3REMA 2H9DA 5CKXC 3RMIA 2VKLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D8E A;  2D8D A;  3TFC A;  3HGW A;  1ECM A;  2GTV X;  3HGX A;  3NVT A;  2W1A C;  1YBZ A;  2W19 C;  2H9C A;  3RET A;  2QBV A;  3REM A;  2H9D A;  5CKX C;  3RMI A;  2VKL A; 
#chains in the Genus database with same CATH topology
 2D8E A;  2D8D A;  3TFC A;  3HGW A;  1ECM A;  2GTV X;  3HGX A;  1NI5 A;  2E21 A;  3A2K A;  3NVT A;  2W1A C;  1YBZ A;  2W19 C;  2H9C A;  3RET A;  2QBV A;  3REM A;  2E89 A;  2H9D A;  5CKX C;  3RMI A;  2VKL A;  1WY5 A; 
#chains in the Genus database with same CATH homology
 2D8E A;  2D8D A;  3TFC A;  3HGW A;  1ECM A;  2GTV X;  3HGX A;  3NVT A;  2W1A C;  1YBZ A;  2W19 C;  2H9C A;  3RET A;  2QBV A;  3REM A;  2H9D A;  5CKX C;  3RMI A;  2VKL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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