2D8XA

Solution structure of the second lim domain of particularly interesting new cys-his protein (pinch)
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
70
structure length
70
Chain Sequence
GSSGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein, cell cycle
molecule keywords Protein PINCH
publication title Solution structure of the second LIM domain of particularly interesting new Cys-His protein (PINCH)
rcsb
source organism Homo sapiens
total genus 5
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2005-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2d8xA00
1G47A 1B8TA 2CUQA 2MIUA 2D8YA 1A7IA 3MMKA 1RUTX 2DFYC 2O10A 2XJYA 1U5SB 3IXEB 1V6GA 2DJ7A 2L6ZC 1X6AA 1WYHA 1WIGA 1CXXA 2CURA 2O13A 4KFZA 2KBXB 2L6YB 1X61A 2D8ZA 1QLIA 2XJZA 4JCJA 2CO8A 1X63A 2IYBE 1IBIA 1X4LA 1X64A 4HI9B 1NYPA 1X62A 2L4ZA 2D8XA 2DARA 1IMLA 2CORA 2LXDA 2MBVA 2YPAC 2LZUA 1CTLA 2CUPA 2JTNA 1X68A 2EGQA 1J2OA 1X3HA 2EHEA 2XQNT 4HI8B 2CU8A 3F6QB 2DLOA 1M3VA
chains in the Genus database with same CATH superfamily
4BHWA 2D8YA 1A7IA 3NIKA 1RUTX 2DFYC 3NIMA 5A1LA 5LKXA 1U5SB 4UF0B 5FXZA 1WIGA 1CXXA 3NILA 2CO8A 4EZHA 4EZ4A 5FXWA 2JTNA 1J2OA 2XQNT 4HI8B 1M3VA 1G47A 1B8TA 2CUQA 2XUEA 2DJ7A 2L6ZC 1X6AA 2O13A 2KBXB 3NIHA 2XJZA 5LKUA 2IYBE 1X64A 4EYUA 5FYMA 1IMLA 5FY0A 2EGQA 2CU8A 3F6QB 2MIUA 5FY7A 3MMKA 3ZLIA 5FXXA 2XJYA 3ZPOA 3AVSA 2CURA 4KFZA 1X61A 1QLIA 4UF0A 4JCJA 5FXVA 3AVRA 5FP3A 3NISA 1NYPA 2D8XA 2CORA 2LXDA 1CTLA 5LKZA 2CUPA 1X68A 1X3HA 3NINA 5FY1A 2O10A 3IXEB 1V6GA 1WYHA 2L6YB 2D8ZA 1IBIA 1X63A 1X4LA 4HI9B 5LKTA 1X62A 2L4ZA 2DARA 4ASKA 2MBVA 3NIJA 2YPAC 2LZUA 2EHEA 2DLOA
chains in the Genus database with same CATH topology
4BHWA 2D8YA 1A7IA 3NIKA 1RUTX 2DFYC 3NIMA 5A1LA 5LKXA 1U5SB 4UF0B 5FXZA 1WIGA 1CXXA 3NILA 2CO8A 4EZHA 4EZ4A 5FXWA 2JTNA 1J2OA 2XQNT 4HI8B 1M3VA 1G47A 1B8TA 2CUQA 2XUEA 2DJ7A 2L6ZC 1X6AA 2O13A 2KBXB 3NIHA 2XJZA 5LKUA 2IYBE 1X64A 4EYUA 5FYMA 1IMLA 5FY0A 2EGQA 2CU8A 3F6QB 2MIUA 5FY7A 3MMKA 3ZLIA 5FXXA 2XJYA 3ZPOA 3AVSA 2CURA 4KFZA 1X61A 1QLIA 4UF0A 4JCJA 5FXVA 3AVRA 5FP3A 3NISA 1NYPA 2D8XA 2CORA 2LXDA 1CTLA 5LKZA 2CUPA 1X68A 1X3HA 3NINA 5FY1A 2O10A 3IXEB 1V6GA 1WYHA 2L6YB 2D8ZA 1IBIA 1X63A 1X4LA 4HI9B 5LKTA 1X62A 2L4ZA 2DARA 4ASKA 2MBVA 3NIJA 2YPAC 2LZUA 2EHEA 2DLOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G47 A;  1B8T A;  2CUQ A;  2MIU A;  2D8Y A;  1A7I A;  3MMK A;  1RUT X;  2DFY C;  2O10 A;  2XJY A;  1U5S B;  3IXE B;  1V6G A;  2DJ7 A;  2L6Z C;  1X6A A;  1WYH A;  1WIG A;  1CXX A;  2CUR A;  2O13 A;  4KFZ A;  2KBX B;  2L6Y B;  1X61 A;  2D8Z A;  1QLI A;  2XJZ A;  4JCJ A;  2CO8 A;  1X63 A;  2IYB E;  1IBI A;  1X4L A;  1X64 A;  4HI9 B;  1NYP A;  1X62 A;  2L4Z A;  2D8X A;  2DAR A;  1IML A;  2COR A;  2LXD A;  2MBV A;  2YPA C;  2LZU A;  1CTL A;  2CUP A;  2JTN A;  1X68 A;  2EGQ A;  1J2O A;  1X3H A;  2EHE A;  2XQN T;  4HI8 B;  2CU8 A;  3F6Q B;  2DLO A;  1M3V A; 
#chains in the Genus database with same CATH topology
 4BHW A;  2D8Y A;  1A7I A;  3NIK A;  1RUT X;  2DFY C;  3NIM A;  5A1L A;  5LKX A;  1U5S B;  4UF0 B;  5FXZ A;  1WIG A;  1CXX A;  3NIL A;  2CO8 A;  4EZH A;  4EZ4 A;  5FXW A;  2JTN A;  1J2O A;  2XQN T;  4HI8 B;  1M3V A;  1G47 A;  1B8T A;  2CUQ A;  2XUE A;  2DJ7 A;  2L6Z C;  1X6A A;  2O13 A;  2KBX B;  3NIH A;  2XJZ A;  5LKU A;  2IYB E;  1X64 A;  4EYU A;  5FYM A;  1IML A;  5FY0 A;  2EGQ A;  2CU8 A;  3F6Q B;  2MIU A;  5FY7 A;  3MMK A;  3ZLI A;  5FXX A;  2XJY A;  3ZPO A;  3AVS A;  2CUR A;  4KFZ A;  1X61 A;  1QLI A;  4UF0 A;  4JCJ A;  5FXV A;  3AVR A;  5FP3 A;  3NIS A;  1NYP A;  2D8X A;  2COR A;  2LXD A;  1CTL A;  5LKZ A;  2CUP A;  1X68 A;  1X3H A;  3NIN A;  5FY1 A;  2O10 A;  3IXE B;  1V6G A;  1WYH A;  2L6Y B;  2D8Z A;  1IBI A;  1X63 A;  1X4L A;  4HI9 B;  5LKT A;  1X62 A;  2L4Z A;  2DAR A;  4ASK A;  2MBV A;  3NIJ A;  2YPA C;  2LZU A;  2EHE A;  2DLO A; 
#chains in the Genus database with same CATH homology
 4BHW A;  2D8Y A;  1A7I A;  3NIK A;  1RUT X;  2DFY C;  3NIM A;  5A1L A;  5LKX A;  1U5S B;  4UF0 B;  5FXZ A;  1WIG A;  1CXX A;  3NIL A;  2CO8 A;  4EZH A;  4EZ4 A;  5FXW A;  2JTN A;  1J2O A;  2XQN T;  4HI8 B;  1M3V A;  1G47 A;  1B8T A;  2CUQ A;  2XUE A;  2DJ7 A;  2L6Z C;  1X6A A;  2O13 A;  2KBX B;  3NIH A;  2XJZ A;  5LKU A;  2IYB E;  1X64 A;  4EYU A;  5FYM A;  1IML A;  5FY0 A;  2EGQ A;  2CU8 A;  3F6Q B;  2MIU A;  5FY7 A;  3MMK A;  3ZLI A;  5FXX A;  2XJY A;  3ZPO A;  3AVS A;  2CUR A;  4KFZ A;  1X61 A;  1QLI A;  4UF0 A;  4JCJ A;  5FXV A;  3AVR A;  5FP3 A;  3NIS A;  1NYP A;  2D8X A;  2COR A;  2LXD A;  1CTL A;  5LKZ A;  2CUP A;  1X68 A;  1X3H A;  3NIN A;  5FY1 A;  2O10 A;  3IXE B;  1V6G A;  1WYH A;  2L6Y B;  2D8Z A;  1IBI A;  1X63 A;  1X4L A;  4HI9 B;  5LKT A;  1X62 A;  2L4Z A;  2DAR A;  4ASK A;  2MBV A;  3NIJ A;  2YPA C;  2LZU A;  2EHE A;  2DLO A; 
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similar chains in the Genus database (?% sequence similarity)
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