2DCQA

Fully automated nmr structure determination of the rhodanese homology domain at4g01050(175-295) from arabidopsis thaliana
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
134
structure length
134
Chain Sequence
GSSGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKTSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Putative protein At4g01050
publication title Automated protein structure determination from NMR spectra
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 29
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2006-01-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2dcqA00
1QB0A 3ICSA 2MOIA 2GWFA 1RHDA 1YMKA 1YM9A 1GMXA 2IFDA 3IPOA 2VSWA 3P3AA 3HIXA 3OP3A 4JGTA 4WH9A 2FSXA 1E0CA 2HHGA 2JTSA 1TQ1A 3ILMA 2EG4B 2JTQA 5LAMA 1YMDA 1OKGA 1H4KX 2ORAA 3R2UA 3ICTA 3TG3A 1CWRA 2UZQA 2JTRA 4WH7A 3TG1B 2DCQA 2J6PA 5HBLA 3MZZA 1GN0A 1RHSA 3UTNX 1URHA 3IPPA 3K9RA 3ICRA 3G5JA 3OLHA 1WHBA 2EG3A 3IWHA 3FS5A 2IFVA 3I3UA 1WV9A 5HPAA 1YT8A 2K0ZA 2OUCA 1BOHA 3TP9A 3HWIA 1ORBA 1BOIA 1YMLA 3HZUA 5HBQA 2EG4A 5HBPA 1H4MX 1T3KA 3AAXA 1CWTA 3FNJA 2WLXA 1YS0A 3NT6A 3NTDA 2MOLA 5LAOA 1VEEA 2WLRA 1QXNA 4OCGA 4F67A 2MRMA 3O3WA 1C25A 3FOJA 3GK5A 5HBOA 3F4AA 3AAYA 2KL3A 3I2VA 1UARA 1HZMA 2A2KA 3NTAA 3NHVA 1DP2A 3D1PA 3FLHA 1CWSA
chains in the Genus database with same CATH superfamily
1QB0A 3ICSA 2MOIA 2GWFA 1RHDA 1YMKA 1YM9A 1GMXA 2IFDA 3IPOA 2VSWA 3P3AA 3HIXA 3OP3A 4JGTA 4WH9A 2FSXA 1E0CA 2HHGA 2JTSA 1TQ1A 3ILMA 2EG4B 2JTQA 5LAMA 1YMDA 1OKGA 1H4KX 2ORAA 3R2UA 3ICTA 3TG3A 1CWRA 2UZQA 2JTRA 4WH7A 3TG1B 2DCQA 2J6PA 5HBLA 3MZZA 1GN0A 1RHSA 3UTNX 1URHA 3IPPA 3K9RA 3ICRA 3G5JA 3OLHA 1WHBA 2EG3A 3IWHA 3FS5A 2IFVA 3I3UA 1WV9A 5HPAA 1YT8A 2K0ZA 2OUCA 1BOHA 3TP9A 3HWIA 1ORBA 1BOIA 1YMLA 3HZUA 5HBQA 2EG4A 5HBPA 1H4MX 1T3KA 3AAXA 1CWTA 3FNJA 2WLXA 1YS0A 3NT6A 3NTDA 2MOLA 5LAOA 1VEEA 2WLRA 1QXNA 4OCGA 2Q82A 4F67A 2MRMA 3O3WA 1C25A 3FOJA 3GK5A 5HBOA 3F4AA 3AAYA 2KL3A 3I2VA 1UARA 1HZMA 2A2KA 3NTAA 3NHVA 1DP2A 3D1PA 3FLHA 1CWSA
chains in the Genus database with same CATH topology
1QB0A 3ICSA 2MOIA 2GWFA 1RHDA 1YMKA 1YM9A 1GMXA 2IFDA 3IPOA 2VSWA 3P3AA 3HIXA 3OP3A 4JGTA 4WH9A 2FSXA 1E0CA 2HHGA 2JTSA 1TQ1A 3ILMA 2EG4B 2JTQA 5LAMA 1YMDA 1OKGA 1H4KX 2ORAA 3R2UA 3ICTA 3TG3A 1CWRA 2UZQA 2JTRA 4WH7A 3TG1B 2DCQA 2J6PA 5HBLA 3MZZA 1GN0A 1RHSA 3UTNX 1URHA 3IPPA 3K9RA 3ICRA 3G5JA 3OLHA 1WHBA 2EG3A 3IWHA 3FS5A 2IFVA 3I3UA 1WV9A 5HPAA 1YT8A 2K0ZA 2OUCA 1BOHA 3TP9A 3HWIA 1ORBA 1BOIA 1YMLA 3HZUA 5HBQA 2EG4A 5HBPA 1H4MX 1T3KA 3AAXA 1CWTA 3FNJA 2WLXA 1YS0A 3NT6A 3NTDA 2MOLA 5LAOA 1VEEA 2WLRA 1QXNA 4OCGA 4F67A 2MRMA 3O3WA 1C25A 3FOJA 3GK5A 5HBOA 3F4AA 3AAYA 2KL3A 3I2VA 1UARA 1HZMA 2A2KA 3NTAA 3NHVA 1DP2A 3D1PA 3FLHA 1CWSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QB0 A;  3ICS A;  2MOI A;  2GWF A;  1RHD A;  1YMK A;  1YM9 A;  1GMX A;  2IFD A;  3IPO A;  2VSW A;  3P3A A;  3HIX A;  3OP3 A;  4JGT A;  4WH9 A;  2FSX A;  1E0C A;  2HHG A;  2JTS A;  1TQ1 A;  3ILM A;  2EG4 B;  2JTQ A;  5LAM A;  1YMD A;  1OKG A;  1H4K X;  2ORA A;  3R2U A;  3ICT A;  3TG3 A;  1CWR A;  2UZQ A;  2JTR A;  4WH7 A;  3TG1 B;  2DCQ A;  2J6P A;  5HBL A;  3MZZ A;  1GN0 A;  1RHS A;  3UTN X;  1URH A;  3IPP A;  3K9R A;  3ICR A;  3G5J A;  3OLH A;  1WHB A;  2EG3 A;  3IWH A;  3FS5 A;  2IFV A;  3I3U A;  1WV9 A;  5HPA A;  1YT8 A;  2K0Z A;  2OUC A;  1BOH A;  3TP9 A;  3HWI A;  1ORB A;  1BOI A;  1YML A;  3HZU A;  5HBQ A;  2EG4 A;  5HBP A;  1H4M X;  1T3K A;  3AAX A;  1CWT A;  3FNJ A;  2WLX A;  1YS0 A;  3NT6 A;  3NTD A;  2MOL A;  5LAO A;  1VEE A;  2WLR A;  1QXN A;  4OCG A;  4F67 A;  2MRM A;  3O3W A;  1C25 A;  3FOJ A;  3GK5 A;  5HBO A;  3F4A A;  3AAY A;  2KL3 A;  3I2V A;  1UAR A;  1HZM A;  2A2K A;  3NTA A;  3NHV A;  1DP2 A;  3D1P A;  3FLH A;  1CWS A; 
#chains in the Genus database with same CATH topology
 1QB0 A;  3ICS A;  2MOI A;  2GWF A;  1RHD A;  1YMK A;  1YM9 A;  1GMX A;  2IFD A;  3IPO A;  2VSW A;  3P3A A;  3HIX A;  3OP3 A;  4JGT A;  4WH9 A;  2FSX A;  1E0C A;  2HHG A;  2JTS A;  1TQ1 A;  3ILM A;  2EG4 B;  2JTQ A;  5LAM A;  1YMD A;  1OKG A;  1H4K X;  2ORA A;  3R2U A;  3ICT A;  3TG3 A;  1CWR A;  2UZQ A;  2JTR A;  4WH7 A;  3TG1 B;  2DCQ A;  2J6P A;  5HBL A;  3MZZ A;  1GN0 A;  1RHS A;  3UTN X;  1URH A;  3IPP A;  3K9R A;  3ICR A;  3G5J A;  3OLH A;  1WHB A;  2EG3 A;  3IWH A;  3FS5 A;  2IFV A;  3I3U A;  1WV9 A;  5HPA A;  1YT8 A;  2K0Z A;  2OUC A;  1BOH A;  3TP9 A;  3HWI A;  1ORB A;  1BOI A;  1YML A;  3HZU A;  5HBQ A;  2EG4 A;  5HBP A;  1H4M X;  1T3K A;  3AAX A;  1CWT A;  3FNJ A;  2WLX A;  1YS0 A;  3NT6 A;  3NTD A;  2MOL A;  5LAO A;  1VEE A;  2WLR A;  1QXN A;  4OCG A;  2Q82 A;  4F67 A;  2MRM A;  3O3W A;  1C25 A;  3FOJ A;  3GK5 A;  5HBO A;  3F4A A;  3AAY A;  2KL3 A;  3I2V A;  1UAR A;  1HZM A;  2A2K A;  3NTA A;  3NHV A;  1DP2 A;  3D1P A;  3FLH A;  1CWS A; 
#chains in the Genus database with same CATH homology
 1QB0 A;  3ICS A;  2MOI A;  2GWF A;  1RHD A;  1YMK A;  1YM9 A;  1GMX A;  2IFD A;  3IPO A;  2VSW A;  3P3A A;  3HIX A;  3OP3 A;  4JGT A;  4WH9 A;  2FSX A;  1E0C A;  2HHG A;  2JTS A;  1TQ1 A;  3ILM A;  2EG4 B;  2JTQ A;  5LAM A;  1YMD A;  1OKG A;  1H4K X;  2ORA A;  3R2U A;  3ICT A;  3TG3 A;  1CWR A;  2UZQ A;  2JTR A;  4WH7 A;  3TG1 B;  2DCQ A;  2J6P A;  5HBL A;  3MZZ A;  1GN0 A;  1RHS A;  3UTN X;  1URH A;  3IPP A;  3K9R A;  3ICR A;  3G5J A;  3OLH A;  1WHB A;  2EG3 A;  3IWH A;  3FS5 A;  2IFV A;  3I3U A;  1WV9 A;  5HPA A;  1YT8 A;  2K0Z A;  2OUC A;  1BOH A;  3TP9 A;  3HWI A;  1ORB A;  1BOI A;  1YML A;  3HZU A;  5HBQ A;  2EG4 A;  5HBP A;  1H4M X;  1T3K A;  3AAX A;  1CWT A;  3FNJ A;  2WLX A;  1YS0 A;  3NT6 A;  3NTD A;  2MOL A;  5LAO A;  1VEE A;  2WLR A;  1QXN A;  4OCG A;  4F67 A;  2MRM A;  3O3W A;  1C25 A;  3FOJ A;  3GK5 A;  5HBO A;  3F4A A;  3AAY A;  2KL3 A;  3I2V A;  1UAR A;  1HZM A;  2A2K A;  3NTA A;  3NHV A;  1DP2 A;  3D1P A;  3FLH A;  1CWS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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