2DE6D

The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords terminal oxygenase component of carbazole
publication title Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 20
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.-:
pdb deposition date 2006-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2de6D00
3GKEA 2XRXA 3VMGD 2BCCE 2HMMA 1KB9E 3FOUA 4QDFB 4NBAD 2ZT9D 3GL2A 1NYKA 4NBBD 2BMQA 3GCEA 2B24A 4HM5A 2HMKA 2E4QA 2A06E 4H13D 3H1IE 3CXHE 3L75E 2E75D 4QUPA 2QJKC 2NUKA 3GZXA 4HM1A 3C0DA 1FQTA 3EN1A 2NVFA 4AAYB 4HKVA 2Q3WA 3H1KE 1NTME 1SQXE 1SQPE 1SQBE 1NTKE 4QDCA 2DE7D 4HM6A 2DE6D 3GTSA 3GZYA 4HM4A 3GTEA 5KKZC 3VCAA 4QDDA 2QPZA 2YVJB 1BCCE 2JZAA 4NBCD 1SJGA 3H1LE 4NBED 2NVGA 3L72E 2GBXA 4QUQA 2NVEA 3D89A 4QURA 3EQQA 1VCKA 1SQVE 1O7HA 2I7FA 4NBHD 3VMID 3CX5E 1O7MA 2E74D 2B1XA 2GBWA 1G8JB 1NDOA 3DQYA 2YFJA 4EMJB 1UUWA 1NU1E 4NBFD 3CWBE 2DE5D 1VF5D 2E76D 3L73E 1P84E 3GOBA 1O7WA 4AIVA 4NBGD 1KYOE 2NUMA 1RIEA 1JM1A 4OGQD 2FYUE 3L70E 5CXMA 4HM7A 2HMJA 3BCCE 3H1JE 1RFSA 4NB8D 4U3FE 2D2CD 2IBZE 4QCKA 1PP9E 3GL0A 1L0LE 2JO6A 4NB9D 3VCPA 2BMRA 4HM2A 5AEWA 1O7NA 3N0QA 4PD4E 4QDFA 2XSHA 2QJPC 1BE3E 4HJLA 2HMLA 2E4PA 1ZRTE 1ULIA 3VMHD 2BMOA 1L0NE 2XR8A 3L74E 4H0LD 3H1HE 4HM0A 1NTZE 1EG9A 3AZCA 4H44D 3TGUE 2XSOA 2QJYC 4HM3A 1SQQE 3GB4A 5KLVE 5AEUA 2YFIA 4HM8A 4PV1D 4P1CH 2HMNA 2CKFA 4NBDD 4P1BH 1UUVA 5HL4A 1O7GA 1O7PA 2HMOA 3L71E 2YFLA 2YIUC 5BOKA 5KLIC 1EZVE 1ULJA 1PPJE 2NWFA 1G8KB 2ZYLA 2FYNC 1WQLA 1Q90C 1VM9A
chains in the Genus database with same CATH superfamily
3GKEA 2XRXA 3VMGD 2BCCE 2HMMA 1KB9E 3FOUA 4QDFB 4NBAD 2ZT9D 3GL2A 1NYKA 4NBBD 2BMQA 3GCEA 2B24A 4HM5A 2HMKA 2E4QA 2A06E 4H13D 3H1IE 3CXHE 3L75E 2E75D 4QUPA 2QJKC 2NUKA 3GZXA 4HM1A 3C0DA 1FQTA 3EN1A 2NVFA 4AAYB 4HKVA 2Q3WA 3H1KE 1NTME 1SQXE 1SQPE 1SQBE 1NTKE 4QDCA 2DE7D 4HM6A 2DE6D 3GTSA 3GZYA 4HM4A 3GTEA 5KKZC 3VCAA 4QDDA 2QPZA 2YVJB 1BCCE 2JZAA 4NBCD 1SJGA 3H1LE 4NBED 2NVGA 3L72E 2GBXA 4QUQA 2NVEA 3D89A 4QURA 3EQQA 1VCKA 1SQVE 1O7HA 2I7FA 4NBHD 3VMID 3CX5E 1O7MA 2E74D 2B1XA 2GBWA 1G8JB 1NDOA 3DQYA 2YFJA 4EMJB 1UUWA 1NU1E 4NBFD 3CWBE 2DE5D 1VF5D 2E76D 3L73E 1P84E 3GOBA 1O7WA 4AIVA 4NBGD 1KYOE 2NUMA 1RIEA 1JM1A 4OGQD 2FYUE 3L70E 5CXMA 4HM7A 2HMJA 3BCCE 3H1JE 1RFSA 4NB8D 4U3FE 2D2CD 2IBZE 4QCKA 1PP9E 3GL0A 1L0LE 2JO6A 4NB9D 3VCPA 2BMRA 4HM2A 5AEWA 1O7NA 3N0QA 4PD4E 4QDFA 2XSHA 2QJPC 1BE3E 4HJLA 2HMLA 2E4PA 1ZRTE 1ULIA 3VMHD 2BMOA 1L0NE 2XR8A 3L74E 4H0LD 3H1HE 4HM0A 1NTZE 1EG9A 3AZCA 4H44D 3TGUE 2XSOA 2QJYC 4HM3A 1SQQE 3GB4A 5KLVE 5AEUA 2YFIA 4HM8A 4PV1D 4P1CH 2HMNA 2CKFA 4NBDD 4P1BH 1UUVA 5HL4A 1O7GA 1O7PA 2HMOA 3L71E 2YFLA 2YIUC 5BOKA 5KLIC 1EZVE 1ULJA 1PPJE 2NWFA 1G8KB 2ZYLA 2FYNC 1WQLA 1Q90C 1VM9A
chains in the Genus database with same CATH topology
3GKEA 2XRXA 3VMGD 2BCCE 2HMMA 1KB9E 3FOUA 4QDFB 4NBAD 2ZT9D 3GL2A 1NYKA 4NBBD 2BMQA 3GCEA 2B24A 4HM5A 2HMKA 2E4QA 2A06E 4H13D 3H1IE 3CXHE 3L75E 2E75D 4QUPA 2QJKC 2NUKA 3GZXA 4HM1A 3C0DA 1FQTA 3EN1A 2NVFA 4AAYB 4HKVA 2Q3WA 3H1KE 1NTME 1SQXE 1SQPE 1SQBE 1NTKE 4QDCA 2DE7D 4HM6A 2DE6D 3GTSA 3GZYA 4HM4A 3GTEA 5KKZC 3VCAA 4QDDA 2QPZA 2YVJB 1BCCE 2JZAA 4NBCD 1SJGA 3H1LE 4NBED 2NVGA 3L72E 2GBXA 4QUQA 2NVEA 3D89A 4QURA 3EQQA 1VCKA 1SQVE 1O7HA 2I7FA 4NBHD 3VMID 3CX5E 1O7MA 2E74D 2B1XA 2GBWA 1G8JB 1NDOA 3DQYA 2YFJA 4EMJB 1UUWA 1NU1E 4NBFD 3CWBE 2DE5D 1VF5D 2E76D 3L73E 1P84E 3GOBA 1O7WA 4AIVA 4NBGD 1KYOE 2NUMA 1RIEA 1JM1A 4OGQD 2FYUE 3L70E 5CXMA 4HM7A 2HMJA 3BCCE 3H1JE 1RFSA 4NB8D 4U3FE 2D2CD 2IBZE 4QCKA 1PP9E 3GL0A 1L0LE 2JO6A 4NB9D 3VCPA 2BMRA 4HM2A 5AEWA 1O7NA 3N0QA 4PD4E 4QDFA 2XSHA 2QJPC 1BE3E 4HJLA 2HMLA 2E4PA 1ZRTE 1ULIA 3VMHD 2BMOA 1L0NE 2XR8A 3L74E 4H0LD 3H1HE 4HM0A 1NTZE 1EG9A 3AZCA 4H44D 3TGUE 2XSOA 2QJYC 4HM3A 1SQQE 3GB4A 5KLVE 5AEUA 2YFIA 4HM8A 4PV1D 4P1CH 2HMNA 2CKFA 4NBDD 4P1BH 1UUVA 5HL4A 1O7GA 1O7PA 2HMOA 3L71E 2YFLA 2YIUC 5BOKA 5KLIC 1EZVE 1ULJA 1PPJE 2NWFA 1G8KB 2ZYLA 2FYNC 1WQLA 1Q90C 1VM9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GKE A;  2XRX A;  3VMG D;  2BCC E;  2HMM A;  1KB9 E;  3FOU A;  4QDF B;  4NBA D;  2ZT9 D;  3GL2 A;  1NYK A;  4NBB D;  2BMQ A;  3GCE A;  2B24 A;  4HM5 A;  2HMK A;  2E4Q A;  2A06 E;  4H13 D;  3H1I E;  3CXH E;  3L75 E;  2E75 D;  4QUP A;  2QJK C;  2NUK A;  3GZX A;  4HM1 A;  3C0D A;  1FQT A;  3EN1 A;  2NVF A;  4AAY B;  4HKV A;  2Q3W A;  3H1K E;  1NTM E;  1SQX E;  1SQP E;  1SQB E;  1NTK E;  4QDC A;  2DE7 D;  4HM6 A;  2DE6 D;  3GTS A;  3GZY A;  4HM4 A;  3GTE A;  5KKZ C;  3VCA A;  4QDD A;  2QPZ A;  2YVJ B;  1BCC E;  2JZA A;  4NBC D;  1SJG A;  3H1L E;  4NBE D;  2NVG A;  3L72 E;  2GBX A;  4QUQ A;  2NVE A;  3D89 A;  4QUR A;  3EQQ A;  1VCK A;  1SQV E;  1O7H A;  2I7F A;  4NBH D;  3VMI D;  3CX5 E;  1O7M A;  2E74 D;  2B1X A;  2GBW A;  1G8J B;  1NDO A;  3DQY A;  2YFJ A;  4EMJ B;  1UUW A;  1NU1 E;  4NBF D;  3CWB E;  2DE5 D;  1VF5 D;  2E76 D;  3L73 E;  1P84 E;  3GOB A;  1O7W A;  4AIV A;  4NBG D;  1KYO E;  2NUM A;  1RIE A;  1JM1 A;  4OGQ D;  2FYU E;  3L70 E;  5CXM A;  4HM7 A;  2HMJ A;  3BCC E;  3H1J E;  1RFS A;  4NB8 D;  4U3F E;  2D2C D;  2IBZ E;  4QCK A;  1PP9 E;  3GL0 A;  1L0L E;  2JO6 A;  4NB9 D;  3VCP A;  2BMR A;  4HM2 A;  5AEW A;  1O7N A;  3N0Q A;  4PD4 E;  4QDF A;  2XSH A;  2QJP C;  1BE3 E;  4HJL A;  2HML A;  2E4P A;  1ZRT E;  1ULI A;  3VMH D;  2BMO A;  1L0N E;  2XR8 A;  3L74 E;  4H0L D;  3H1H E;  4HM0 A;  1NTZ E;  1EG9 A;  3AZC A;  4H44 D;  3TGU E;  2XSO A;  2QJY C;  4HM3 A;  1SQQ E;  3GB4 A;  5KLV E;  5AEU A;  2YFI A;  4HM8 A;  4PV1 D;  4P1C H;  2HMN A;  2CKF A;  4NBD D;  4P1B H;  1UUV A;  5HL4 A;  1O7G A;  1O7P A;  2HMO A;  3L71 E;  2YFL A;  2YIU C;  5BOK A;  5KLI C;  1EZV E;  1ULJ A;  1PPJ E;  2NWF A;  1G8K B;  2ZYL A;  2FYN C;  1WQL A;  1Q90 C;  1VM9 A; 
#chains in the Genus database with same CATH topology
 3GKE A;  2XRX A;  3VMG D;  2BCC E;  2HMM A;  1KB9 E;  3FOU A;  4QDF B;  4NBA D;  2ZT9 D;  3GL2 A;  1NYK A;  4NBB D;  2BMQ A;  3GCE A;  2B24 A;  4HM5 A;  2HMK A;  2E4Q A;  2A06 E;  4H13 D;  3H1I E;  3CXH E;  3L75 E;  2E75 D;  4QUP A;  2QJK C;  2NUK A;  3GZX A;  4HM1 A;  3C0D A;  1FQT A;  3EN1 A;  2NVF A;  4AAY B;  4HKV A;  2Q3W A;  3H1K E;  1NTM E;  1SQX E;  1SQP E;  1SQB E;  1NTK E;  4QDC A;  2DE7 D;  4HM6 A;  2DE6 D;  3GTS A;  3GZY A;  4HM4 A;  3GTE A;  5KKZ C;  3VCA A;  4QDD A;  2QPZ A;  2YVJ B;  1BCC E;  2JZA A;  4NBC D;  1SJG A;  3H1L E;  4NBE D;  2NVG A;  3L72 E;  2GBX A;  4QUQ A;  2NVE A;  3D89 A;  4QUR A;  3EQQ A;  1VCK A;  1SQV E;  1O7H A;  2I7F A;  4NBH D;  3VMI D;  3CX5 E;  1O7M A;  2E74 D;  2B1X A;  2GBW A;  1G8J B;  1NDO A;  3DQY A;  2YFJ A;  4EMJ B;  1UUW A;  1NU1 E;  4NBF D;  3CWB E;  2DE5 D;  1VF5 D;  2E76 D;  3L73 E;  1P84 E;  3GOB A;  1O7W A;  4AIV A;  4NBG D;  1KYO E;  2NUM A;  1RIE A;  1JM1 A;  4OGQ D;  2FYU E;  3L70 E;  5CXM A;  4HM7 A;  2HMJ A;  3BCC E;  3H1J E;  1RFS A;  4NB8 D;  4U3F E;  2D2C D;  2IBZ E;  4QCK A;  1PP9 E;  3GL0 A;  1L0L E;  2JO6 A;  4NB9 D;  3VCP A;  2BMR A;  4HM2 A;  5AEW A;  1O7N A;  3N0Q A;  4PD4 E;  4QDF A;  2XSH A;  2QJP C;  1BE3 E;  4HJL A;  2HML A;  2E4P A;  1ZRT E;  1ULI A;  3VMH D;  2BMO A;  1L0N E;  2XR8 A;  3L74 E;  4H0L D;  3H1H E;  4HM0 A;  1NTZ E;  1EG9 A;  3AZC A;  4H44 D;  3TGU E;  2XSO A;  2QJY C;  4HM3 A;  1SQQ E;  3GB4 A;  5KLV E;  5AEU A;  2YFI A;  4HM8 A;  4PV1 D;  4P1C H;  2HMN A;  2CKF A;  4NBD D;  4P1B H;  1UUV A;  5HL4 A;  1O7G A;  1O7P A;  2HMO A;  3L71 E;  2YFL A;  2YIU C;  5BOK A;  5KLI C;  1EZV E;  1ULJ A;  1PPJ E;  2NWF A;  1G8K B;  2ZYL A;  2FYN C;  1WQL A;  1Q90 C;  1VM9 A; 
#chains in the Genus database with same CATH homology
 3GKE A;  2XRX A;  3VMG D;  2BCC E;  2HMM A;  1KB9 E;  3FOU A;  4QDF B;  4NBA D;  2ZT9 D;  3GL2 A;  1NYK A;  4NBB D;  2BMQ A;  3GCE A;  2B24 A;  4HM5 A;  2HMK A;  2E4Q A;  2A06 E;  4H13 D;  3H1I E;  3CXH E;  3L75 E;  2E75 D;  4QUP A;  2QJK C;  2NUK A;  3GZX A;  4HM1 A;  3C0D A;  1FQT A;  3EN1 A;  2NVF A;  4AAY B;  4HKV A;  2Q3W A;  3H1K E;  1NTM E;  1SQX E;  1SQP E;  1SQB E;  1NTK E;  4QDC A;  2DE7 D;  4HM6 A;  2DE6 D;  3GTS A;  3GZY A;  4HM4 A;  3GTE A;  5KKZ C;  3VCA A;  4QDD A;  2QPZ A;  2YVJ B;  1BCC E;  2JZA A;  4NBC D;  1SJG A;  3H1L E;  4NBE D;  2NVG A;  3L72 E;  2GBX A;  4QUQ A;  2NVE A;  3D89 A;  4QUR A;  3EQQ A;  1VCK A;  1SQV E;  1O7H A;  2I7F A;  4NBH D;  3VMI D;  3CX5 E;  1O7M A;  2E74 D;  2B1X A;  2GBW A;  1G8J B;  1NDO A;  3DQY A;  2YFJ A;  4EMJ B;  1UUW A;  1NU1 E;  4NBF D;  3CWB E;  2DE5 D;  1VF5 D;  2E76 D;  3L73 E;  1P84 E;  3GOB A;  1O7W A;  4AIV A;  4NBG D;  1KYO E;  2NUM A;  1RIE A;  1JM1 A;  4OGQ D;  2FYU E;  3L70 E;  5CXM A;  4HM7 A;  2HMJ A;  3BCC E;  3H1J E;  1RFS A;  4NB8 D;  4U3F E;  2D2C D;  2IBZ E;  4QCK A;  1PP9 E;  3GL0 A;  1L0L E;  2JO6 A;  4NB9 D;  3VCP A;  2BMR A;  4HM2 A;  5AEW A;  1O7N A;  3N0Q A;  4PD4 E;  4QDF A;  2XSH A;  2QJP C;  1BE3 E;  4HJL A;  2HML A;  2E4P A;  1ZRT E;  1ULI A;  3VMH D;  2BMO A;  1L0N E;  2XR8 A;  3L74 E;  4H0L D;  3H1H E;  4HM0 A;  1NTZ E;  1EG9 A;  3AZC A;  4H44 D;  3TGU E;  2XSO A;  2QJY C;  4HM3 A;  1SQQ E;  3GB4 A;  5KLV E;  5AEU A;  2YFI A;  4HM8 A;  4PV1 D;  4P1C H;  2HMN A;  2CKF A;  4NBD D;  4P1B H;  1UUV A;  5HL4 A;  1O7G A;  1O7P A;  2HMO A;  3L71 E;  2YFL A;  2YIU C;  5BOK A;  5KLI C;  1EZV E;  1ULJ A;  1PPJ E;  2NWF A;  1G8K B;  2ZYL A;  2FYN C;  1WQL A;  1Q90 C;  1VM9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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