2DE6D

The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords terminal oxygenase component of carbazole
publication title Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 20
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.-:
pdb deposition date 2006-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2de6D00
4HM1A 2NVGA 2A06E 4H0LD 1WQLA 3BCCE 2D2CD 2FYNC 4QDFA 4H13D 1KYOE 2BCCE 4U3FE 1G8KB 3CWBE 3H1KE 1BCCE 4HKVA 2DE5D 1P84E 3H1IE 4H44D 4PV1D 2QJKC 2XSHA 1RIEA 2QJPC 3GOBA 3L74E 3CX5E 3L70E 2BMRA 1NDOA 3L71E 2E74D 4NBBD 1JM1A 2B1XA 1SQVE 3VMGD 4P1CH 4AAYB 4AIVA 1BE3E 1EG9A 5HL4A 2ZYLA 1SQQE 3VMID 4NBCD 3C0DA 2BMOA 2ZT9D 5CXMA 4QDFB 2XSOA 3EN1A 3GL2A 5KLVE 1RFSA 3GB4A 3AZCA 5BOKA 4QURA 2QJYC 3VMHD 4EMJB 1O7NA 2HMKA 1SQBE 1NYKA 1ULIA 3GTSA 2YVJB 4HM8A 2DE7D 2JO6A 3DQYA 5KLIC 2I7FA 1G8JB 3VCAA 3H1HE 1L0LE 1UUWA 2YFIA 2E4QA 5AEWA 1O7HA 3H1JE 3L73E 3GL0A 3CXHE 3FOUA 1PPJE 4HM3A 3GCEA 2NWFA 4HM4A 1VM9A 1Q90C 2GBXA 4HJLA 2QPZA 4QUQA 2NUMA 3GZXA 2E75D 4HM5A 4HM2A 4PD4E 1VF5D 4P1BH 2NVEA 1L0NE 4HM7A 3VCPA 2GBWA 2HMMA 2XR8A 1KB9E 1SQXE 1NTKE 2B24A 2HMNA 4NB8D 1O7GA 1SQPE 2BMQA 4OGQD 4NBHD 4NBFD 2NUKA 2IBZE 2Q3WA 4HM6A 4NBAD 1ULJA 5AEUA 1EZVE 1O7MA 1NU1E 3GZYA 2XRXA 3EQQA 2FYUE 3N0QA 1SJGA 3GTEA 4NBDD 2YIUC 1VCKA 2E76D 1UUVA 4QUPA 1O7WA 1NTZE 2DE6D 1NTME 2HMLA 4QDCA 4HM0A 4NB9D 2HMJA 2YFJA 4QDDA 5KKZC 1PP9E 2NVFA 4NBGD 2JZAA 1O7PA 3TGUE 2CKFA 3GKEA 3L72E 2E4PA 2HMOA 4NBED 3D89A 2YFLA 4QCKA 3H1LE 1ZRTE 1FQTA 3L75E
chains in the Genus database with same CATH superfamily
4HM1A 2NVGA 2A06E 4H0LD 1WQLA 3BCCE 2D2CD 2FYNC 4QDFA 4H13D 1KYOE 2BCCE 4U3FE 1G8KB 3CWBE 3H1KE 1BCCE 4HKVA 2DE5D 1P84E 3H1IE 4H44D 4PV1D 2QJKC 2XSHA 1RIEA 2QJPC 3GOBA 3L74E 3CX5E 3L70E 2BMRA 1NDOA 3L71E 2E74D 4NBBD 1JM1A 2B1XA 1SQVE 3VMGD 4P1CH 4AAYB 4AIVA 1BE3E 1EG9A 5HL4A 2ZYLA 1SQQE 3VMID 4NBCD 3C0DA 2BMOA 2ZT9D 5CXMA 4QDFB 2XSOA 3EN1A 3GL2A 5KLVE 1RFSA 3GB4A 3AZCA 5BOKA 4QURA 2QJYC 3VMHD 4EMJB 1O7NA 2HMKA 1SQBE 1NYKA 1ULIA 3GTSA 2YVJB 4HM8A 2DE7D 2JO6A 3DQYA 5KLIC 2I7FA 1G8JB 3VCAA 3H1HE 1L0LE 1UUWA 2YFIA 2E4QA 5AEWA 1O7HA 3H1JE 3L73E 3GL0A 3CXHE 3FOUA 1PPJE 4HM3A 3GCEA 2NWFA 4HM4A 1VM9A 1Q90C 2GBXA 4HJLA 2QPZA 4QUQA 2NUMA 3GZXA 2E75D 4HM5A 4HM2A 4PD4E 1VF5D 4P1BH 2NVEA 1L0NE 4HM7A 3VCPA 2GBWA 2HMMA 2XR8A 1KB9E 1SQXE 1NTKE 2B24A 2HMNA 4NB8D 1O7GA 1SQPE 2BMQA 4OGQD 4NBHD 4NBFD 2NUKA 2IBZE 2Q3WA 4HM6A 4NBAD 1ULJA 5AEUA 1EZVE 1O7MA 1NU1E 3GZYA 2XRXA 3EQQA 2FYUE 3N0QA 1SJGA 3GTEA 4NBDD 2YIUC 1VCKA 2E76D 1UUVA 4QUPA 1O7WA 1NTZE 2DE6D 1NTME 2HMLA 4QDCA 4HM0A 4NB9D 2HMJA 2YFJA 4QDDA 5KKZC 1PP9E 2NVFA 4NBGD 2JZAA 1O7PA 3TGUE 2CKFA 3GKEA 3L72E 2E4PA 2HMOA 4NBED 3D89A 2YFLA 4QCKA 3H1LE 1ZRTE 1FQTA 3L75E
chains in the Genus database with same CATH topology
4HM1A 2NVGA 2A06E 4H0LD 1WQLA 3BCCE 2D2CD 2FYNC 4QDFA 4H13D 1KYOE 2BCCE 4U3FE 1G8KB 3CWBE 3H1KE 1BCCE 4HKVA 2DE5D 1P84E 3H1IE 4H44D 4PV1D 2QJKC 2XSHA 1RIEA 2QJPC 3GOBA 3L74E 3CX5E 3L70E 2BMRA 1NDOA 3L71E 2E74D 4NBBD 1JM1A 2B1XA 1SQVE 3VMGD 4P1CH 4AAYB 4AIVA 1BE3E 1EG9A 5HL4A 2ZYLA 1SQQE 3VMID 4NBCD 3C0DA 2BMOA 2ZT9D 5CXMA 4QDFB 2XSOA 3EN1A 3GL2A 5KLVE 1RFSA 3GB4A 3AZCA 5BOKA 4QURA 2QJYC 3VMHD 4EMJB 1O7NA 2HMKA 1SQBE 1NYKA 1ULIA 3GTSA 2YVJB 4HM8A 2DE7D 2JO6A 3DQYA 5KLIC 2I7FA 1G8JB 3VCAA 3H1HE 1L0LE 1UUWA 2YFIA 2E4QA 5AEWA 1O7HA 3H1JE 3L73E 3GL0A 3CXHE 3FOUA 1PPJE 4HM3A 3GCEA 2NWFA 4HM4A 1VM9A 1Q90C 2GBXA 4HJLA 2QPZA 4QUQA 2NUMA 3GZXA 2E75D 4HM5A 4HM2A 4PD4E 1VF5D 4P1BH 2NVEA 1L0NE 4HM7A 3VCPA 2GBWA 2HMMA 2XR8A 1KB9E 1SQXE 1NTKE 2B24A 2HMNA 4NB8D 1O7GA 1SQPE 2BMQA 4OGQD 4NBHD 4NBFD 2NUKA 2IBZE 2Q3WA 4HM6A 4NBAD 1ULJA 5AEUA 1EZVE 1O7MA 1NU1E 3GZYA 2XRXA 3EQQA 2FYUE 3N0QA 1SJGA 3GTEA 4NBDD 2YIUC 1VCKA 2E76D 1UUVA 4QUPA 1O7WA 1NTZE 2DE6D 1NTME 2HMLA 4QDCA 4HM0A 4NB9D 2HMJA 2YFJA 4QDDA 5KKZC 1PP9E 2NVFA 4NBGD 2JZAA 1O7PA 3TGUE 2CKFA 3GKEA 3L72E 2E4PA 2HMOA 4NBED 3D89A 2YFLA 4QCKA 3H1LE 1ZRTE 1FQTA 3L75E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HM1 A;  2NVG A;  2A06 E;  4H0L D;  1WQL A;  3BCC E;  2D2C D;  2FYN C;  4QDF A;  4H13 D;  1KYO E;  2BCC E;  4U3F E;  1G8K B;  3CWB E;  3H1K E;  1BCC E;  4HKV A;  2DE5 D;  1P84 E;  3H1I E;  4H44 D;  4PV1 D;  2QJK C;  2XSH A;  1RIE A;  2QJP C;  3GOB A;  3L74 E;  3CX5 E;  3L70 E;  2BMR A;  1NDO A;  3L71 E;  2E74 D;  4NBB D;  1JM1 A;  2B1X A;  1SQV E;  3VMG D;  4P1C H;  4AAY B;  4AIV A;  1BE3 E;  1EG9 A;  5HL4 A;  2ZYL A;  1SQQ E;  3VMI D;  4NBC D;  3C0D A;  2BMO A;  2ZT9 D;  5CXM A;  4QDF B;  2XSO A;  3EN1 A;  3GL2 A;  5KLV E;  1RFS A;  3GB4 A;  3AZC A;  5BOK A;  4QUR A;  2QJY C;  3VMH D;  4EMJ B;  1O7N A;  2HMK A;  1SQB E;  1NYK A;  1ULI A;  3GTS A;  2YVJ B;  4HM8 A;  2DE7 D;  2JO6 A;  3DQY A;  5KLI C;  2I7F A;  1G8J B;  3VCA A;  3H1H E;  1L0L E;  1UUW A;  2YFI A;  2E4Q A;  5AEW A;  1O7H A;  3H1J E;  3L73 E;  3GL0 A;  3CXH E;  3FOU A;  1PPJ E;  4HM3 A;  3GCE A;  2NWF A;  4HM4 A;  1VM9 A;  1Q90 C;  2GBX A;  4HJL A;  2QPZ A;  4QUQ A;  2NUM A;  3GZX A;  2E75 D;  4HM5 A;  4HM2 A;  4PD4 E;  1VF5 D;  4P1B H;  2NVE A;  1L0N E;  4HM7 A;  3VCP A;  2GBW A;  2HMM A;  2XR8 A;  1KB9 E;  1SQX E;  1NTK E;  2B24 A;  2HMN A;  4NB8 D;  1O7G A;  1SQP E;  2BMQ A;  4OGQ D;  4NBH D;  4NBF D;  2NUK A;  2IBZ E;  2Q3W A;  4HM6 A;  4NBA D;  1ULJ A;  5AEU A;  1EZV E;  1O7M A;  1NU1 E;  3GZY A;  2XRX A;  3EQQ A;  2FYU E;  3N0Q A;  1SJG A;  3GTE A;  4NBD D;  2YIU C;  1VCK A;  2E76 D;  1UUV A;  4QUP A;  1O7W A;  1NTZ E;  2DE6 D;  1NTM E;  2HML A;  4QDC A;  4HM0 A;  4NB9 D;  2HMJ A;  2YFJ A;  4QDD A;  5KKZ C;  1PP9 E;  2NVF A;  4NBG D;  2JZA A;  1O7P A;  3TGU E;  2CKF A;  3GKE A;  3L72 E;  2E4P A;  2HMO A;  4NBE D;  3D89 A;  2YFL A;  4QCK A;  3H1L E;  1ZRT E;  1FQT A;  3L75 E; 
#chains in the Genus database with same CATH topology
 4HM1 A;  2NVG A;  2A06 E;  4H0L D;  1WQL A;  3BCC E;  2D2C D;  2FYN C;  4QDF A;  4H13 D;  1KYO E;  2BCC E;  4U3F E;  1G8K B;  3CWB E;  3H1K E;  1BCC E;  4HKV A;  2DE5 D;  1P84 E;  3H1I E;  4H44 D;  4PV1 D;  2QJK C;  2XSH A;  1RIE A;  2QJP C;  3GOB A;  3L74 E;  3CX5 E;  3L70 E;  2BMR A;  1NDO A;  3L71 E;  2E74 D;  4NBB D;  1JM1 A;  2B1X A;  1SQV E;  3VMG D;  4P1C H;  4AAY B;  4AIV A;  1BE3 E;  1EG9 A;  5HL4 A;  2ZYL A;  1SQQ E;  3VMI D;  4NBC D;  3C0D A;  2BMO A;  2ZT9 D;  5CXM A;  4QDF B;  2XSO A;  3EN1 A;  3GL2 A;  5KLV E;  1RFS A;  3GB4 A;  3AZC A;  5BOK A;  4QUR A;  2QJY C;  3VMH D;  4EMJ B;  1O7N A;  2HMK A;  1SQB E;  1NYK A;  1ULI A;  3GTS A;  2YVJ B;  4HM8 A;  2DE7 D;  2JO6 A;  3DQY A;  5KLI C;  2I7F A;  1G8J B;  3VCA A;  3H1H E;  1L0L E;  1UUW A;  2YFI A;  2E4Q A;  5AEW A;  1O7H A;  3H1J E;  3L73 E;  3GL0 A;  3CXH E;  3FOU A;  1PPJ E;  4HM3 A;  3GCE A;  2NWF A;  4HM4 A;  1VM9 A;  1Q90 C;  2GBX A;  4HJL A;  2QPZ A;  4QUQ A;  2NUM A;  3GZX A;  2E75 D;  4HM5 A;  4HM2 A;  4PD4 E;  1VF5 D;  4P1B H;  2NVE A;  1L0N E;  4HM7 A;  3VCP A;  2GBW A;  2HMM A;  2XR8 A;  1KB9 E;  1SQX E;  1NTK E;  2B24 A;  2HMN A;  4NB8 D;  1O7G A;  1SQP E;  2BMQ A;  4OGQ D;  4NBH D;  4NBF D;  2NUK A;  2IBZ E;  2Q3W A;  4HM6 A;  4NBA D;  1ULJ A;  5AEU A;  1EZV E;  1O7M A;  1NU1 E;  3GZY A;  2XRX A;  3EQQ A;  2FYU E;  3N0Q A;  1SJG A;  3GTE A;  4NBD D;  2YIU C;  1VCK A;  2E76 D;  1UUV A;  4QUP A;  1O7W A;  1NTZ E;  2DE6 D;  1NTM E;  2HML A;  4QDC A;  4HM0 A;  4NB9 D;  2HMJ A;  2YFJ A;  4QDD A;  5KKZ C;  1PP9 E;  2NVF A;  4NBG D;  2JZA A;  1O7P A;  3TGU E;  2CKF A;  3GKE A;  3L72 E;  2E4P A;  2HMO A;  4NBE D;  3D89 A;  2YFL A;  4QCK A;  3H1L E;  1ZRT E;  1FQT A;  3L75 E; 
#chains in the Genus database with same CATH homology
 4HM1 A;  2NVG A;  2A06 E;  4H0L D;  1WQL A;  3BCC E;  2D2C D;  2FYN C;  4QDF A;  4H13 D;  1KYO E;  2BCC E;  4U3F E;  1G8K B;  3CWB E;  3H1K E;  1BCC E;  4HKV A;  2DE5 D;  1P84 E;  3H1I E;  4H44 D;  4PV1 D;  2QJK C;  2XSH A;  1RIE A;  2QJP C;  3GOB A;  3L74 E;  3CX5 E;  3L70 E;  2BMR A;  1NDO A;  3L71 E;  2E74 D;  4NBB D;  1JM1 A;  2B1X A;  1SQV E;  3VMG D;  4P1C H;  4AAY B;  4AIV A;  1BE3 E;  1EG9 A;  5HL4 A;  2ZYL A;  1SQQ E;  3VMI D;  4NBC D;  3C0D A;  2BMO A;  2ZT9 D;  5CXM A;  4QDF B;  2XSO A;  3EN1 A;  3GL2 A;  5KLV E;  1RFS A;  3GB4 A;  3AZC A;  5BOK A;  4QUR A;  2QJY C;  3VMH D;  4EMJ B;  1O7N A;  2HMK A;  1SQB E;  1NYK A;  1ULI A;  3GTS A;  2YVJ B;  4HM8 A;  2DE7 D;  2JO6 A;  3DQY A;  5KLI C;  2I7F A;  1G8J B;  3VCA A;  3H1H E;  1L0L E;  1UUW A;  2YFI A;  2E4Q A;  5AEW A;  1O7H A;  3H1J E;  3L73 E;  3GL0 A;  3CXH E;  3FOU A;  1PPJ E;  4HM3 A;  3GCE A;  2NWF A;  4HM4 A;  1VM9 A;  1Q90 C;  2GBX A;  4HJL A;  2QPZ A;  4QUQ A;  2NUM A;  3GZX A;  2E75 D;  4HM5 A;  4HM2 A;  4PD4 E;  1VF5 D;  4P1B H;  2NVE A;  1L0N E;  4HM7 A;  3VCP A;  2GBW A;  2HMM A;  2XR8 A;  1KB9 E;  1SQX E;  1NTK E;  2B24 A;  2HMN A;  4NB8 D;  1O7G A;  1SQP E;  2BMQ A;  4OGQ D;  4NBH D;  4NBF D;  2NUK A;  2IBZ E;  2Q3W A;  4HM6 A;  4NBA D;  1ULJ A;  5AEU A;  1EZV E;  1O7M A;  1NU1 E;  3GZY A;  2XRX A;  3EQQ A;  2FYU E;  3N0Q A;  1SJG A;  3GTE A;  4NBD D;  2YIU C;  1VCK A;  2E76 D;  1UUV A;  4QUP A;  1O7W A;  1NTZ E;  2DE6 D;  1NTM E;  2HML A;  4QDC A;  4HM0 A;  4NB9 D;  2HMJ A;  2YFJ A;  4QDD A;  5KKZ C;  1PP9 E;  2NVF A;  4NBG D;  2JZA A;  1O7P A;  3TGU E;  2CKF A;  3GKE A;  3L72 E;  2E4P A;  2HMO A;  4NBE D;  3D89 A;  2YFL A;  4QCK A;  3H1L E;  1ZRT E;  1FQT A;  3L75 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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