2DE7D

The substrate-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
105
structure length
105
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords terminal oxygenase component of carbazole
publication title Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 105
sequence length 105
chains with identical sequence E, F
ec nomenclature ec 1.14.12.-:
pdb deposition date 2006-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2de7D00
4QURA 1O7PA 4NBDD 4QUPA 2ZT9D 2BMOA 4QDCA 3VCAA 1VF5D 5BOKA 1JM1A 2HMOA 2HMLA 3GL0A 3GZXA 5KLIC 3L71E 4NB9D 2QJYC 5AEUA 3L75E 1Q90C 3GB4A 1L0NE 2E4QA 1NTKE 4HJLA 1SQPE 3VMID 4P1CH 5KLVE 4AAYB 3D89A 3TGUE 1RFSA 2DE7D 1UUWA 1UUVA 2QJPC 2XSHA 4HM1A 4NBBD 1VCKA 2BMRA 5CXMA 4NBFD 4NBAD 4P1BH 3H1KE 4HM7A 4NBED 3EQQA 1EZVE 4QUQA 2YIUC 1KB9E 1EG9A 1WQLA 2HMMA 2YFIA 2NWFA 4NBHD 3VMGD 3EN1A 3VCPA 1SQQE 2DE6D 2FYUE 4EMJB 3CXHE 4HM5A 3H1HE 1ZRTE 2XR8A 2A06E 1O7NA 3L73E 2JO6A 1SJGA 1ULJA 1O7MA 1P84E 1O7HA 2I7FA 2E74D 3BCCE 1NDOA 4QDFA 1SQXE 2BCCE 3L72E 3VMHD 1L0LE 1RIEA 2JZAA 2NVEA 4NBCD 2D2CD 3GL2A 3GKEA 4QDDA 2XSOA 4HM4A 3L70E 4U3FE 4HM3A 3GOBA 1SQBE 1O7GA 2NUKA 4H13D 4H44D 2NVFA 1NTME 3H1LE 3GTSA 4NB8D 3CX5E 1ULIA 2CKFA 4QCKA 1G8JB 3H1JE 5AEWA 4HM8A 3FOUA 3N0QA 2ZYLA 2HMKA 5HL4A 4HM2A 4HKVA 2GBXA 2Q3WA 2BMQA 1FQTA 2YVJB 3CWBE 2YFLA 1PPJE 2HMNA 2B24A 2YFJA 1VM9A 2IBZE 2E75D 3DQYA 5KKZC 1NYKA 3C0DA 1NU1E 1PP9E 1BCCE 4H0LD 2NUMA 1BE3E 2DE5D 4OGQD 1G8KB 1O7WA 1NTZE 3L74E 4PV1D 1KYOE 2E76D 2NVGA 4HM0A 4HM6A 3GZYA 2E4PA 4NBGD 3GTEA 3AZCA 1SQVE 2FYNC 2HMJA 4PD4E 4AIVA 2B1XA 4QDFB 2XRXA 3H1IE 2GBWA 3GCEA 2QPZA 2QJKC
chains in the Genus database with same CATH superfamily
4QURA 1O7PA 4NBDD 4QUPA 2ZT9D 2BMOA 4QDCA 3VCAA 1VF5D 5BOKA 1JM1A 2HMOA 2HMLA 3GL0A 3GZXA 5KLIC 3L71E 4NB9D 2QJYC 5AEUA 3L75E 1Q90C 3GB4A 1L0NE 2E4QA 1NTKE 4HJLA 1SQPE 3VMID 4P1CH 5KLVE 4AAYB 3D89A 3TGUE 1RFSA 2DE7D 1UUWA 1UUVA 2QJPC 2XSHA 4HM1A 4NBBD 1VCKA 2BMRA 5CXMA 4NBFD 4NBAD 4P1BH 3H1KE 4HM7A 4NBED 3EQQA 1EZVE 4QUQA 2YIUC 1KB9E 1EG9A 1WQLA 2HMMA 2YFIA 2NWFA 4NBHD 3VMGD 3EN1A 3VCPA 1SQQE 2DE6D 2FYUE 4EMJB 3CXHE 4HM5A 3H1HE 1ZRTE 2XR8A 2A06E 1O7NA 3L73E 2JO6A 1SJGA 1ULJA 1O7MA 1P84E 1O7HA 2I7FA 2E74D 3BCCE 1NDOA 4QDFA 1SQXE 2BCCE 3L72E 3VMHD 1L0LE 1RIEA 2JZAA 2NVEA 4NBCD 2D2CD 3GL2A 3GKEA 4QDDA 2XSOA 4HM4A 3L70E 4U3FE 4HM3A 3GOBA 1SQBE 1O7GA 2NUKA 4H13D 4H44D 2NVFA 1NTME 3H1LE 3GTSA 4NB8D 3CX5E 1ULIA 2CKFA 4QCKA 1G8JB 3H1JE 5AEWA 4HM8A 3FOUA 3N0QA 2ZYLA 2HMKA 5HL4A 4HM2A 4HKVA 2GBXA 2Q3WA 2BMQA 1FQTA 2YVJB 3CWBE 2YFLA 1PPJE 2HMNA 2B24A 2YFJA 1VM9A 2IBZE 2E75D 3DQYA 5KKZC 1NYKA 3C0DA 1NU1E 1PP9E 1BCCE 4H0LD 2NUMA 1BE3E 2DE5D 4OGQD 1G8KB 1O7WA 1NTZE 3L74E 4PV1D 1KYOE 2E76D 2NVGA 4HM0A 4HM6A 3GZYA 2E4PA 4NBGD 3GTEA 3AZCA 1SQVE 2FYNC 2HMJA 4PD4E 4AIVA 2B1XA 4QDFB 2XRXA 3H1IE 2GBWA 3GCEA 2QPZA 2QJKC
chains in the Genus database with same CATH topology
4QURA 1O7PA 4NBDD 4QUPA 2ZT9D 2BMOA 4QDCA 3VCAA 1VF5D 5BOKA 1JM1A 2HMOA 2HMLA 3GL0A 3GZXA 5KLIC 3L71E 4NB9D 2QJYC 5AEUA 3L75E 1Q90C 3GB4A 1L0NE 2E4QA 1NTKE 4HJLA 1SQPE 3VMID 4P1CH 5KLVE 4AAYB 3D89A 3TGUE 1RFSA 2DE7D 1UUWA 1UUVA 2QJPC 2XSHA 4HM1A 4NBBD 1VCKA 2BMRA 5CXMA 4NBFD 4NBAD 4P1BH 3H1KE 4HM7A 4NBED 3EQQA 1EZVE 4QUQA 2YIUC 1KB9E 1EG9A 1WQLA 2HMMA 2YFIA 2NWFA 4NBHD 3VMGD 3EN1A 3VCPA 1SQQE 2DE6D 2FYUE 4EMJB 3CXHE 4HM5A 3H1HE 1ZRTE 2XR8A 2A06E 1O7NA 3L73E 2JO6A 1SJGA 1ULJA 1O7MA 1P84E 1O7HA 2I7FA 2E74D 3BCCE 1NDOA 4QDFA 1SQXE 2BCCE 3L72E 3VMHD 1L0LE 1RIEA 2JZAA 2NVEA 4NBCD 2D2CD 3GL2A 3GKEA 4QDDA 2XSOA 4HM4A 3L70E 4U3FE 4HM3A 3GOBA 1SQBE 1O7GA 2NUKA 4H13D 4H44D 2NVFA 1NTME 3H1LE 3GTSA 4NB8D 3CX5E 1ULIA 2CKFA 4QCKA 1G8JB 3H1JE 5AEWA 4HM8A 3FOUA 3N0QA 2ZYLA 2HMKA 5HL4A 4HM2A 4HKVA 2GBXA 2Q3WA 2BMQA 1FQTA 2YVJB 3CWBE 2YFLA 1PPJE 2HMNA 2B24A 2YFJA 1VM9A 2IBZE 2E75D 3DQYA 5KKZC 1NYKA 3C0DA 1NU1E 1PP9E 1BCCE 4H0LD 2NUMA 1BE3E 2DE5D 4OGQD 1G8KB 1O7WA 1NTZE 3L74E 4PV1D 1KYOE 2E76D 2NVGA 4HM0A 4HM6A 3GZYA 2E4PA 4NBGD 3GTEA 3AZCA 1SQVE 2FYNC 2HMJA 4PD4E 4AIVA 2B1XA 4QDFB 2XRXA 3H1IE 2GBWA 3GCEA 2QPZA 2QJKC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QUR A;  1O7P A;  4NBD D;  4QUP A;  2ZT9 D;  2BMO A;  4QDC A;  3VCA A;  1VF5 D;  5BOK A;  1JM1 A;  2HMO A;  2HML A;  3GL0 A;  3GZX A;  5KLI C;  3L71 E;  4NB9 D;  2QJY C;  5AEU A;  3L75 E;  1Q90 C;  3GB4 A;  1L0N E;  2E4Q A;  1NTK E;  4HJL A;  1SQP E;  3VMI D;  4P1C H;  5KLV E;  4AAY B;  3D89 A;  3TGU E;  1RFS A;  2DE7 D;  1UUW A;  1UUV A;  2QJP C;  2XSH A;  4HM1 A;  4NBB D;  1VCK A;  2BMR A;  5CXM A;  4NBF D;  4NBA D;  4P1B H;  3H1K E;  4HM7 A;  4NBE D;  3EQQ A;  1EZV E;  4QUQ A;  2YIU C;  1KB9 E;  1EG9 A;  1WQL A;  2HMM A;  2YFI A;  2NWF A;  4NBH D;  3VMG D;  3EN1 A;  3VCP A;  1SQQ E;  2DE6 D;  2FYU E;  4EMJ B;  3CXH E;  4HM5 A;  3H1H E;  1ZRT E;  2XR8 A;  2A06 E;  1O7N A;  3L73 E;  2JO6 A;  1SJG A;  1ULJ A;  1O7M A;  1P84 E;  1O7H A;  2I7F A;  2E74 D;  3BCC E;  1NDO A;  4QDF A;  1SQX E;  2BCC E;  3L72 E;  3VMH D;  1L0L E;  1RIE A;  2JZA A;  2NVE A;  4NBC D;  2D2C D;  3GL2 A;  3GKE A;  4QDD A;  2XSO A;  4HM4 A;  3L70 E;  4U3F E;  4HM3 A;  3GOB A;  1SQB E;  1O7G A;  2NUK A;  4H13 D;  4H44 D;  2NVF A;  1NTM E;  3H1L E;  3GTS A;  4NB8 D;  3CX5 E;  1ULI A;  2CKF A;  4QCK A;  1G8J B;  3H1J E;  5AEW A;  4HM8 A;  3FOU A;  3N0Q A;  2ZYL A;  2HMK A;  5HL4 A;  4HM2 A;  4HKV A;  2GBX A;  2Q3W A;  2BMQ A;  1FQT A;  2YVJ B;  3CWB E;  2YFL A;  1PPJ E;  2HMN A;  2B24 A;  2YFJ A;  1VM9 A;  2IBZ E;  2E75 D;  3DQY A;  5KKZ C;  1NYK A;  3C0D A;  1NU1 E;  1PP9 E;  1BCC E;  4H0L D;  2NUM A;  1BE3 E;  2DE5 D;  4OGQ D;  1G8K B;  1O7W A;  1NTZ E;  3L74 E;  4PV1 D;  1KYO E;  2E76 D;  2NVG A;  4HM0 A;  4HM6 A;  3GZY A;  2E4P A;  4NBG D;  3GTE A;  3AZC A;  1SQV E;  2FYN C;  2HMJ A;  4PD4 E;  4AIV A;  2B1X A;  4QDF B;  2XRX A;  3H1I E;  2GBW A;  3GCE A;  2QPZ A;  2QJK C; 
#chains in the Genus database with same CATH topology
 4QUR A;  1O7P A;  4NBD D;  4QUP A;  2ZT9 D;  2BMO A;  4QDC A;  3VCA A;  1VF5 D;  5BOK A;  1JM1 A;  2HMO A;  2HML A;  3GL0 A;  3GZX A;  5KLI C;  3L71 E;  4NB9 D;  2QJY C;  5AEU A;  3L75 E;  1Q90 C;  3GB4 A;  1L0N E;  2E4Q A;  1NTK E;  4HJL A;  1SQP E;  3VMI D;  4P1C H;  5KLV E;  4AAY B;  3D89 A;  3TGU E;  1RFS A;  2DE7 D;  1UUW A;  1UUV A;  2QJP C;  2XSH A;  4HM1 A;  4NBB D;  1VCK A;  2BMR A;  5CXM A;  4NBF D;  4NBA D;  4P1B H;  3H1K E;  4HM7 A;  4NBE D;  3EQQ A;  1EZV E;  4QUQ A;  2YIU C;  1KB9 E;  1EG9 A;  1WQL A;  2HMM A;  2YFI A;  2NWF A;  4NBH D;  3VMG D;  3EN1 A;  3VCP A;  1SQQ E;  2DE6 D;  2FYU E;  4EMJ B;  3CXH E;  4HM5 A;  3H1H E;  1ZRT E;  2XR8 A;  2A06 E;  1O7N A;  3L73 E;  2JO6 A;  1SJG A;  1ULJ A;  1O7M A;  1P84 E;  1O7H A;  2I7F A;  2E74 D;  3BCC E;  1NDO A;  4QDF A;  1SQX E;  2BCC E;  3L72 E;  3VMH D;  1L0L E;  1RIE A;  2JZA A;  2NVE A;  4NBC D;  2D2C D;  3GL2 A;  3GKE A;  4QDD A;  2XSO A;  4HM4 A;  3L70 E;  4U3F E;  4HM3 A;  3GOB A;  1SQB E;  1O7G A;  2NUK A;  4H13 D;  4H44 D;  2NVF A;  1NTM E;  3H1L E;  3GTS A;  4NB8 D;  3CX5 E;  1ULI A;  2CKF A;  4QCK A;  1G8J B;  3H1J E;  5AEW A;  4HM8 A;  3FOU A;  3N0Q A;  2ZYL A;  2HMK A;  5HL4 A;  4HM2 A;  4HKV A;  2GBX A;  2Q3W A;  2BMQ A;  1FQT A;  2YVJ B;  3CWB E;  2YFL A;  1PPJ E;  2HMN A;  2B24 A;  2YFJ A;  1VM9 A;  2IBZ E;  2E75 D;  3DQY A;  5KKZ C;  1NYK A;  3C0D A;  1NU1 E;  1PP9 E;  1BCC E;  4H0L D;  2NUM A;  1BE3 E;  2DE5 D;  4OGQ D;  1G8K B;  1O7W A;  1NTZ E;  3L74 E;  4PV1 D;  1KYO E;  2E76 D;  2NVG A;  4HM0 A;  4HM6 A;  3GZY A;  2E4P A;  4NBG D;  3GTE A;  3AZC A;  1SQV E;  2FYN C;  2HMJ A;  4PD4 E;  4AIV A;  2B1X A;  4QDF B;  2XRX A;  3H1I E;  2GBW A;  3GCE A;  2QPZ A;  2QJK C; 
#chains in the Genus database with same CATH homology
 4QUR A;  1O7P A;  4NBD D;  4QUP A;  2ZT9 D;  2BMO A;  4QDC A;  3VCA A;  1VF5 D;  5BOK A;  1JM1 A;  2HMO A;  2HML A;  3GL0 A;  3GZX A;  5KLI C;  3L71 E;  4NB9 D;  2QJY C;  5AEU A;  3L75 E;  1Q90 C;  3GB4 A;  1L0N E;  2E4Q A;  1NTK E;  4HJL A;  1SQP E;  3VMI D;  4P1C H;  5KLV E;  4AAY B;  3D89 A;  3TGU E;  1RFS A;  2DE7 D;  1UUW A;  1UUV A;  2QJP C;  2XSH A;  4HM1 A;  4NBB D;  1VCK A;  2BMR A;  5CXM A;  4NBF D;  4NBA D;  4P1B H;  3H1K E;  4HM7 A;  4NBE D;  3EQQ A;  1EZV E;  4QUQ A;  2YIU C;  1KB9 E;  1EG9 A;  1WQL A;  2HMM A;  2YFI A;  2NWF A;  4NBH D;  3VMG D;  3EN1 A;  3VCP A;  1SQQ E;  2DE6 D;  2FYU E;  4EMJ B;  3CXH E;  4HM5 A;  3H1H E;  1ZRT E;  2XR8 A;  2A06 E;  1O7N A;  3L73 E;  2JO6 A;  1SJG A;  1ULJ A;  1O7M A;  1P84 E;  1O7H A;  2I7F A;  2E74 D;  3BCC E;  1NDO A;  4QDF A;  1SQX E;  2BCC E;  3L72 E;  3VMH D;  1L0L E;  1RIE A;  2JZA A;  2NVE A;  4NBC D;  2D2C D;  3GL2 A;  3GKE A;  4QDD A;  2XSO A;  4HM4 A;  3L70 E;  4U3F E;  4HM3 A;  3GOB A;  1SQB E;  1O7G A;  2NUK A;  4H13 D;  4H44 D;  2NVF A;  1NTM E;  3H1L E;  3GTS A;  4NB8 D;  3CX5 E;  1ULI A;  2CKF A;  4QCK A;  1G8J B;  3H1J E;  5AEW A;  4HM8 A;  3FOU A;  3N0Q A;  2ZYL A;  2HMK A;  5HL4 A;  4HM2 A;  4HKV A;  2GBX A;  2Q3W A;  2BMQ A;  1FQT A;  2YVJ B;  3CWB E;  2YFL A;  1PPJ E;  2HMN A;  2B24 A;  2YFJ A;  1VM9 A;  2IBZ E;  2E75 D;  3DQY A;  5KKZ C;  1NYK A;  3C0D A;  1NU1 E;  1PP9 E;  1BCC E;  4H0L D;  2NUM A;  1BE3 E;  2DE5 D;  4OGQ D;  1G8K B;  1O7W A;  1NTZ E;  3L74 E;  4PV1 D;  1KYO E;  2E76 D;  2NVG A;  4HM0 A;  4HM6 A;  3GZY A;  2E4P A;  4NBG D;  3GTE A;  3AZC A;  1SQV E;  2FYN C;  2HMJ A;  4PD4 E;  4AIV A;  2B1X A;  4QDF B;  2XRX A;  3H1I E;  2GBW A;  3GCE A;  2QPZ A;  2QJK C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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