2DE7D

The substrate-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
105
structure length
105
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKKL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords terminal oxygenase component of carbazole
publication title Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 105
sequence length 105
chains with identical sequence E, F
ec nomenclature ec 1.14.12.-:
pdb deposition date 2006-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2de7D00
3VMGD 1O7PA 1VM9A 3L74E 4QDCA 1SJGA 1L0LE 2XR8A 3GKEA 1SQVE 4P1CH 4NBHD 5AEUA 1O7MA 1UUWA 2D2CD 2JO6A 1L0NE 4HKVA 5HL4A 4QDFB 4NBGD 1G8KB 3H1KE 5KLIC 2HMLA 2FYUE 2E4PA 2NVGA 1NDOA 3L70E 4HJLA 4HM3A 1P84E 2JZAA 4HM1A 4U3FE 1O7HA 2ZT9D 4HM2A 1PPJE 5CXMA 1SQXE 3GTSA 2E4QA 1BCCE 5BOKA 2E76D 2BMRA 3CWBE 2QPZA 3TGUE 3VCAA 2E75D 2QJYC 2QJPC 4QDFA 4HM0A 3H1JE 1JM1A 1NYKA 4H0LD 2YFLA 1G8JB 3C0DA 4PV1D 2HMNA 3CXHE 3EN1A 2HMJA 1VCKA 2YFJA 3N0QA 2BMQA 1KYOE 3GB4A 2DE7D 3EQQA 3H1LE 2DE5D 3GCEA 2DE6D 2B24A 4AIVA 2YFIA 3FOUA 3GL2A 2XSHA 1NTME 2FYNC 3L73E 4EMJB 2B1XA 1KB9E 1O7NA 3VCPA 4NBAD 2NVEA 3GOBA 2Q3WA 4QURA 4H13D 2HMKA 4QDDA 2BMOA 2YIUC 3VMID 2CKFA 4OGQD 2GBWA 4NBCD 3CX5E 1FQTA 4AAYB 3DQYA 4HM8A 3GZYA 3L72E 1O7WA 1UUVA 2A06E 3D89A 1SQQE 2NVFA 2XRXA 1NU1E 2HMOA 2YVJB 4NBFD 3BCCE 3L75E 4NBBD 4PD4E 1SQPE 4HM7A 2ZYLA 4H44D 4HM6A 2XSOA 2BCCE 3H1IE 3AZCA 4NB9D 4NBED 1O7GA 3VMHD 1EG9A 4QUPA 1VF5D 1ZRTE 4NBDD 1ULJA 1ULIA 1Q90C 4HM4A 2GBXA 3GTEA 4QUQA 2IBZE 1WQLA 3GZXA 2I7FA 3H1HE 2NUKA 3GL0A 1SQBE 2HMMA 5KKZC 1NTKE 2NWFA 4NB8D 4P1BH 1NTZE 4QCKA 1BE3E 1RIEA 5AEWA 5KLVE 3L71E 4HM5A 2E74D 1RFSA 1EZVE 2QJKC 1PP9E 2NUMA
chains in the Genus database with same CATH superfamily
3VMGD 1O7PA 1VM9A 3L74E 4QDCA 1SJGA 1L0LE 2XR8A 3GKEA 1SQVE 4P1CH 4NBHD 5AEUA 1O7MA 1UUWA 2D2CD 2JO6A 1L0NE 4HKVA 5HL4A 4QDFB 4NBGD 1G8KB 3H1KE 5KLIC 2HMLA 2FYUE 2E4PA 2NVGA 1NDOA 3L70E 4HJLA 4HM3A 1P84E 2JZAA 4HM1A 4U3FE 1O7HA 2ZT9D 4HM2A 1PPJE 5CXMA 1SQXE 3GTSA 2E4QA 1BCCE 5BOKA 2E76D 2BMRA 3CWBE 2QPZA 3TGUE 3VCAA 2E75D 2QJYC 2QJPC 4QDFA 4HM0A 3H1JE 1JM1A 1NYKA 4H0LD 2YFLA 1G8JB 3C0DA 4PV1D 2HMNA 3CXHE 3EN1A 2HMJA 1VCKA 2YFJA 3N0QA 2BMQA 1KYOE 3GB4A 2DE7D 3EQQA 3H1LE 2DE5D 3GCEA 2DE6D 2B24A 4AIVA 2YFIA 3FOUA 3GL2A 2XSHA 1NTME 2FYNC 3L73E 4EMJB 2B1XA 1KB9E 1O7NA 3VCPA 4NBAD 2NVEA 3GOBA 2Q3WA 4QURA 4H13D 2HMKA 4QDDA 2BMOA 2YIUC 3VMID 2CKFA 4OGQD 2GBWA 4NBCD 3CX5E 1FQTA 4AAYB 3DQYA 4HM8A 3GZYA 3L72E 1O7WA 1UUVA 2A06E 3D89A 1SQQE 2NVFA 2XRXA 1NU1E 2HMOA 2YVJB 4NBFD 3BCCE 3L75E 4NBBD 4PD4E 1SQPE 4HM7A 2ZYLA 4H44D 4HM6A 2XSOA 2BCCE 3H1IE 3AZCA 4NB9D 4NBED 1O7GA 3VMHD 1EG9A 4QUPA 1VF5D 1ZRTE 4NBDD 1ULJA 1ULIA 1Q90C 4HM4A 2GBXA 3GTEA 4QUQA 2IBZE 1WQLA 3GZXA 2I7FA 3H1HE 2NUKA 3GL0A 1SQBE 2HMMA 5KKZC 1NTKE 2NWFA 4NB8D 4P1BH 1NTZE 4QCKA 1BE3E 1RIEA 5AEWA 5KLVE 3L71E 4HM5A 2E74D 1RFSA 1EZVE 2QJKC 1PP9E 2NUMA
chains in the Genus database with same CATH topology
3VMGD 1O7PA 1VM9A 3L74E 4QDCA 1SJGA 1L0LE 2XR8A 3GKEA 1SQVE 4P1CH 4NBHD 5AEUA 1O7MA 1UUWA 2D2CD 2JO6A 1L0NE 4HKVA 5HL4A 4QDFB 4NBGD 1G8KB 3H1KE 5KLIC 2HMLA 2FYUE 2E4PA 2NVGA 1NDOA 3L70E 4HJLA 4HM3A 1P84E 2JZAA 4HM1A 4U3FE 1O7HA 2ZT9D 4HM2A 1PPJE 5CXMA 1SQXE 3GTSA 2E4QA 1BCCE 5BOKA 2E76D 2BMRA 3CWBE 2QPZA 3TGUE 3VCAA 2E75D 2QJYC 2QJPC 4QDFA 4HM0A 3H1JE 1JM1A 1NYKA 4H0LD 2YFLA 1G8JB 3C0DA 4PV1D 2HMNA 3CXHE 3EN1A 2HMJA 1VCKA 2YFJA 3N0QA 2BMQA 1KYOE 3GB4A 2DE7D 3EQQA 3H1LE 2DE5D 3GCEA 2DE6D 2B24A 4AIVA 2YFIA 3FOUA 3GL2A 2XSHA 1NTME 2FYNC 3L73E 4EMJB 2B1XA 1KB9E 1O7NA 3VCPA 4NBAD 2NVEA 3GOBA 2Q3WA 4QURA 4H13D 2HMKA 4QDDA 2BMOA 2YIUC 3VMID 2CKFA 4OGQD 2GBWA 4NBCD 3CX5E 1FQTA 4AAYB 3DQYA 4HM8A 3GZYA 3L72E 1O7WA 1UUVA 2A06E 3D89A 1SQQE 2NVFA 2XRXA 1NU1E 2HMOA 2YVJB 4NBFD 3BCCE 3L75E 4NBBD 4PD4E 1SQPE 4HM7A 2ZYLA 4H44D 4HM6A 2XSOA 2BCCE 3H1IE 3AZCA 4NB9D 4NBED 1O7GA 3VMHD 1EG9A 4QUPA 1VF5D 1ZRTE 4NBDD 1ULJA 1ULIA 1Q90C 4HM4A 2GBXA 3GTEA 4QUQA 2IBZE 1WQLA 3GZXA 2I7FA 3H1HE 2NUKA 3GL0A 1SQBE 2HMMA 5KKZC 1NTKE 2NWFA 4NB8D 4P1BH 1NTZE 4QCKA 1BE3E 1RIEA 5AEWA 5KLVE 3L71E 4HM5A 2E74D 1RFSA 1EZVE 2QJKC 1PP9E 2NUMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VMG D;  1O7P A;  1VM9 A;  3L74 E;  4QDC A;  1SJG A;  1L0L E;  2XR8 A;  3GKE A;  1SQV E;  4P1C H;  4NBH D;  5AEU A;  1O7M A;  1UUW A;  2D2C D;  2JO6 A;  1L0N E;  4HKV A;  5HL4 A;  4QDF B;  4NBG D;  1G8K B;  3H1K E;  5KLI C;  2HML A;  2FYU E;  2E4P A;  2NVG A;  1NDO A;  3L70 E;  4HJL A;  4HM3 A;  1P84 E;  2JZA A;  4HM1 A;  4U3F E;  1O7H A;  2ZT9 D;  4HM2 A;  1PPJ E;  5CXM A;  1SQX E;  3GTS A;  2E4Q A;  1BCC E;  5BOK A;  2E76 D;  2BMR A;  3CWB E;  2QPZ A;  3TGU E;  3VCA A;  2E75 D;  2QJY C;  2QJP C;  4QDF A;  4HM0 A;  3H1J E;  1JM1 A;  1NYK A;  4H0L D;  2YFL A;  1G8J B;  3C0D A;  4PV1 D;  2HMN A;  3CXH E;  3EN1 A;  2HMJ A;  1VCK A;  2YFJ A;  3N0Q A;  2BMQ A;  1KYO E;  3GB4 A;  2DE7 D;  3EQQ A;  3H1L E;  2DE5 D;  3GCE A;  2DE6 D;  2B24 A;  4AIV A;  2YFI A;  3FOU A;  3GL2 A;  2XSH A;  1NTM E;  2FYN C;  3L73 E;  4EMJ B;  2B1X A;  1KB9 E;  1O7N A;  3VCP A;  4NBA D;  2NVE A;  3GOB A;  2Q3W A;  4QUR A;  4H13 D;  2HMK A;  4QDD A;  2BMO A;  2YIU C;  3VMI D;  2CKF A;  4OGQ D;  2GBW A;  4NBC D;  3CX5 E;  1FQT A;  4AAY B;  3DQY A;  4HM8 A;  3GZY A;  3L72 E;  1O7W A;  1UUV A;  2A06 E;  3D89 A;  1SQQ E;  2NVF A;  2XRX A;  1NU1 E;  2HMO A;  2YVJ B;  4NBF D;  3BCC E;  3L75 E;  4NBB D;  4PD4 E;  1SQP E;  4HM7 A;  2ZYL A;  4H44 D;  4HM6 A;  2XSO A;  2BCC E;  3H1I E;  3AZC A;  4NB9 D;  4NBE D;  1O7G A;  3VMH D;  1EG9 A;  4QUP A;  1VF5 D;  1ZRT E;  4NBD D;  1ULJ A;  1ULI A;  1Q90 C;  4HM4 A;  2GBX A;  3GTE A;  4QUQ A;  2IBZ E;  1WQL A;  3GZX A;  2I7F A;  3H1H E;  2NUK A;  3GL0 A;  1SQB E;  2HMM A;  5KKZ C;  1NTK E;  2NWF A;  4NB8 D;  4P1B H;  1NTZ E;  4QCK A;  1BE3 E;  1RIE A;  5AEW A;  5KLV E;  3L71 E;  4HM5 A;  2E74 D;  1RFS A;  1EZV E;  2QJK C;  1PP9 E;  2NUM A; 
#chains in the Genus database with same CATH topology
 3VMG D;  1O7P A;  1VM9 A;  3L74 E;  4QDC A;  1SJG A;  1L0L E;  2XR8 A;  3GKE A;  1SQV E;  4P1C H;  4NBH D;  5AEU A;  1O7M A;  1UUW A;  2D2C D;  2JO6 A;  1L0N E;  4HKV A;  5HL4 A;  4QDF B;  4NBG D;  1G8K B;  3H1K E;  5KLI C;  2HML A;  2FYU E;  2E4P A;  2NVG A;  1NDO A;  3L70 E;  4HJL A;  4HM3 A;  1P84 E;  2JZA A;  4HM1 A;  4U3F E;  1O7H A;  2ZT9 D;  4HM2 A;  1PPJ E;  5CXM A;  1SQX E;  3GTS A;  2E4Q A;  1BCC E;  5BOK A;  2E76 D;  2BMR A;  3CWB E;  2QPZ A;  3TGU E;  3VCA A;  2E75 D;  2QJY C;  2QJP C;  4QDF A;  4HM0 A;  3H1J E;  1JM1 A;  1NYK A;  4H0L D;  2YFL A;  1G8J B;  3C0D A;  4PV1 D;  2HMN A;  3CXH E;  3EN1 A;  2HMJ A;  1VCK A;  2YFJ A;  3N0Q A;  2BMQ A;  1KYO E;  3GB4 A;  2DE7 D;  3EQQ A;  3H1L E;  2DE5 D;  3GCE A;  2DE6 D;  2B24 A;  4AIV A;  2YFI A;  3FOU A;  3GL2 A;  2XSH A;  1NTM E;  2FYN C;  3L73 E;  4EMJ B;  2B1X A;  1KB9 E;  1O7N A;  3VCP A;  4NBA D;  2NVE A;  3GOB A;  2Q3W A;  4QUR A;  4H13 D;  2HMK A;  4QDD A;  2BMO A;  2YIU C;  3VMI D;  2CKF A;  4OGQ D;  2GBW A;  4NBC D;  3CX5 E;  1FQT A;  4AAY B;  3DQY A;  4HM8 A;  3GZY A;  3L72 E;  1O7W A;  1UUV A;  2A06 E;  3D89 A;  1SQQ E;  2NVF A;  2XRX A;  1NU1 E;  2HMO A;  2YVJ B;  4NBF D;  3BCC E;  3L75 E;  4NBB D;  4PD4 E;  1SQP E;  4HM7 A;  2ZYL A;  4H44 D;  4HM6 A;  2XSO A;  2BCC E;  3H1I E;  3AZC A;  4NB9 D;  4NBE D;  1O7G A;  3VMH D;  1EG9 A;  4QUP A;  1VF5 D;  1ZRT E;  4NBD D;  1ULJ A;  1ULI A;  1Q90 C;  4HM4 A;  2GBX A;  3GTE A;  4QUQ A;  2IBZ E;  1WQL A;  3GZX A;  2I7F A;  3H1H E;  2NUK A;  3GL0 A;  1SQB E;  2HMM A;  5KKZ C;  1NTK E;  2NWF A;  4NB8 D;  4P1B H;  1NTZ E;  4QCK A;  1BE3 E;  1RIE A;  5AEW A;  5KLV E;  3L71 E;  4HM5 A;  2E74 D;  1RFS A;  1EZV E;  2QJK C;  1PP9 E;  2NUM A; 
#chains in the Genus database with same CATH homology
 3VMG D;  1O7P A;  1VM9 A;  3L74 E;  4QDC A;  1SJG A;  1L0L E;  2XR8 A;  3GKE A;  1SQV E;  4P1C H;  4NBH D;  5AEU A;  1O7M A;  1UUW A;  2D2C D;  2JO6 A;  1L0N E;  4HKV A;  5HL4 A;  4QDF B;  4NBG D;  1G8K B;  3H1K E;  5KLI C;  2HML A;  2FYU E;  2E4P A;  2NVG A;  1NDO A;  3L70 E;  4HJL A;  4HM3 A;  1P84 E;  2JZA A;  4HM1 A;  4U3F E;  1O7H A;  2ZT9 D;  4HM2 A;  1PPJ E;  5CXM A;  1SQX E;  3GTS A;  2E4Q A;  1BCC E;  5BOK A;  2E76 D;  2BMR A;  3CWB E;  2QPZ A;  3TGU E;  3VCA A;  2E75 D;  2QJY C;  2QJP C;  4QDF A;  4HM0 A;  3H1J E;  1JM1 A;  1NYK A;  4H0L D;  2YFL A;  1G8J B;  3C0D A;  4PV1 D;  2HMN A;  3CXH E;  3EN1 A;  2HMJ A;  1VCK A;  2YFJ A;  3N0Q A;  2BMQ A;  1KYO E;  3GB4 A;  2DE7 D;  3EQQ A;  3H1L E;  2DE5 D;  3GCE A;  2DE6 D;  2B24 A;  4AIV A;  2YFI A;  3FOU A;  3GL2 A;  2XSH A;  1NTM E;  2FYN C;  3L73 E;  4EMJ B;  2B1X A;  1KB9 E;  1O7N A;  3VCP A;  4NBA D;  2NVE A;  3GOB A;  2Q3W A;  4QUR A;  4H13 D;  2HMK A;  4QDD A;  2BMO A;  2YIU C;  3VMI D;  2CKF A;  4OGQ D;  2GBW A;  4NBC D;  3CX5 E;  1FQT A;  4AAY B;  3DQY A;  4HM8 A;  3GZY A;  3L72 E;  1O7W A;  1UUV A;  2A06 E;  3D89 A;  1SQQ E;  2NVF A;  2XRX A;  1NU1 E;  2HMO A;  2YVJ B;  4NBF D;  3BCC E;  3L75 E;  4NBB D;  4PD4 E;  1SQP E;  4HM7 A;  2ZYL A;  4H44 D;  4HM6 A;  2XSO A;  2BCC E;  3H1I E;  3AZC A;  4NB9 D;  4NBE D;  1O7G A;  3VMH D;  1EG9 A;  4QUP A;  1VF5 D;  1ZRT E;  4NBD D;  1ULJ A;  1ULI A;  1Q90 C;  4HM4 A;  2GBX A;  3GTE A;  4QUQ A;  2IBZ E;  1WQL A;  3GZX A;  2I7F A;  3H1H E;  2NUK A;  3GL0 A;  1SQB E;  2HMM A;  5KKZ C;  1NTK E;  2NWF A;  4NB8 D;  4P1B H;  1NTZ E;  4QCK A;  1BE3 E;  1RIE A;  5AEW A;  5KLV E;  3L71 E;  4HM5 A;  2E74 D;  1RFS A;  1EZV E;  2QJK C;  1PP9 E;  2NUM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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