2DE7D

The substrate-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
105
structure length
105
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords terminal oxygenase component of carbazole
total genus 18
structure length 105
sequence length 105
chains with identical sequence E, F
ec nomenclature ec 1.14.12.-:
pdb deposition date 2006-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2de7D00
1O7MA 1VM9A 1O7HA 1SQBE 4PD4E 4HJLA 4NBED 2NVEA 3H1JE 3H1LE 1UUVA 3TGUE 3GB4A 1SQPE 1VCKA 5KKZC 2BMRA 4QCKA 5HL4A 1O7WA 4NB8D 2GBWA 4P1BH 3VMHD 2YVJB 4EMJB 4HM6A 4QUQA 2YFIA 4NBFD 1ULJA 4QDFA 4PV1D 3VCPA 4NBGD 4U3FE 1SQXE 2BCCE 2CKFA 1BCCE 4AIVA 1SJGA 5AEUA 1ULIA 3GKEA 3H1HE 5KLVE 3AZCA 5AEWA 2XSHA 3GTEA 1NDOA 1G8KB 1JM1A 3L74E 2NUKA 4QDCA 2E76D 3C0DA 4HM4A 4OGQD 1BE3E 1NTKE 2QPZA 4QURA 4QDDA 4NB9D 2E4PA 1WQLA 2DE7D 2YFLA 1PP9E 2B1XA 1G8JB 4H0LD 2GBXA 3N0QA 4NBAD 1RIEA 1O7PA 4AAYB 2HMLA 2ZYLA 3EQQA 3GZXA 4HKVA 2JO6A 2XR8A 4QUPA 5BOKA 1NYKA 2NUMA 3DQYA 4QDFB 3GZYA 1L0LE 4HM8A 1UUWA 1ZRTE 4NBDD 3VCAA 1SQQE 2BMOA 2DE5D 4NBHD 2XRXA 3GOBA 3CWBE 3CX5E 5KLIC 3L73E 2JZAA 3D89A 2NVGA 3H1IE 1O7GA 1Q90C 1VF5D 2B24A 3H1KE 1SQVE 2I7FA 3CXHE 1O7NA 1FQTA 4NBBD 2A06E 4HM2A 4HM5A 2E4QA 2E75D 1L0NE 3L70E 4H44D 4HM0A 1EZVE 2HMMA 2HMOA 4NBCD 1P84E 4HM7A 1PPJE 2QJKC 3GL2A 3L71E 2HMJA 2QJPC 4HM1A 2DE6D 3GCEA 1NTME 3VMGD 4P1CH 3GL0A 1KYOE 2BMQA 1NTZE 2E74D 2FYUE 5CXMA 2FYNC 3GTSA 3EN1A 3FOUA 2YFJA 4H13D 1KB9E 2HMNA 2HMKA 2ZT9D 1RFSA 2Q3WA 3BCCE 4HM3A 1NU1E 2NWFA 2IBZE 2XSOA 2NVFA 3L72E 1EG9A 2QJYC 3VMID 3L75E 2YIUC 2D2CD
chains in the Genus database with same CATH superfamily
1O7MA 1VM9A 1O7HA 1SQBE 4PD4E 4HJLA 4NBED 2NVEA 3H1JE 3H1LE 1UUVA 3TGUE 3GB4A 1SQPE 1VCKA 5KKZC 2BMRA 4QCKA 5HL4A 1O7WA 4NB8D 2GBWA 4P1BH 3VMHD 2YVJB 4EMJB 4HM6A 4QUQA 2YFIA 4NBFD 1ULJA 4QDFA 4PV1D 3VCPA 4NBGD 4U3FE 1SQXE 2BCCE 2CKFA 1BCCE 4AIVA 1SJGA 5AEUA 1ULIA 3GKEA 3H1HE 5KLVE 3AZCA 5AEWA 2XSHA 3GTEA 1NDOA 1G8KB 1JM1A 3L74E 2NUKA 4QDCA 2E76D 3C0DA 4HM4A 4OGQD 1BE3E 1NTKE 2QPZA 4QURA 4QDDA 4NB9D 2E4PA 1WQLA 2DE7D 2YFLA 1PP9E 2B1XA 1G8JB 4H0LD 2GBXA 3N0QA 4NBAD 1RIEA 1O7PA 4AAYB 2HMLA 2ZYLA 3EQQA 3GZXA 4HKVA 2JO6A 2XR8A 4QUPA 5BOKA 1NYKA 2NUMA 3DQYA 4QDFB 3GZYA 1L0LE 4HM8A 1UUWA 1ZRTE 4NBDD 3VCAA 1SQQE 2BMOA 2DE5D 4NBHD 2XRXA 3GOBA 3CWBE 3CX5E 5KLIC 3L73E 2JZAA 3D89A 2NVGA 3H1IE 1O7GA 1Q90C 1VF5D 2B24A 3H1KE 1SQVE 2I7FA 3CXHE 1O7NA 1FQTA 4NBBD 2A06E 4HM2A 4HM5A 2E4QA 2E75D 1L0NE 3L70E 4H44D 4HM0A 1EZVE 2HMMA 2HMOA 4NBCD 1P84E 4HM7A 1PPJE 2QJKC 3GL2A 3L71E 2HMJA 2QJPC 4HM1A 2DE6D 3GCEA 1NTME 3VMGD 4P1CH 3GL0A 1KYOE 2BMQA 1NTZE 2E74D 2FYUE 5CXMA 2FYNC 3GTSA 3EN1A 3FOUA 2YFJA 4H13D 1KB9E 2HMNA 2HMKA 2ZT9D 1RFSA 2Q3WA 3BCCE 4HM3A 1NU1E 2NWFA 2IBZE 2XSOA 2NVFA 3L72E 1EG9A 2QJYC 3VMID 3L75E 2YIUC 2D2CD
chains in the Genus database with same CATH topology
1O7MA 1VM9A 1O7HA 1SQBE 4PD4E 4HJLA 4NBED 2NVEA 3H1JE 3H1LE 1UUVA 3TGUE 3GB4A 1SQPE 1VCKA 5KKZC 2BMRA 4QCKA 5HL4A 1O7WA 4NB8D 2GBWA 4P1BH 3VMHD 2YVJB 4EMJB 4HM6A 4QUQA 2YFIA 4NBFD 1ULJA 4QDFA 4PV1D 3VCPA 4NBGD 4U3FE 1SQXE 2BCCE 2CKFA 1BCCE 4AIVA 1SJGA 5AEUA 1ULIA 3GKEA 3H1HE 5KLVE 3AZCA 5AEWA 2XSHA 3GTEA 1NDOA 1G8KB 1JM1A 3L74E 2NUKA 4QDCA 2E76D 3C0DA 4HM4A 4OGQD 1BE3E 1NTKE 2QPZA 4QURA 4QDDA 4NB9D 2E4PA 1WQLA 2DE7D 2YFLA 1PP9E 2B1XA 1G8JB 4H0LD 2GBXA 3N0QA 4NBAD 1RIEA 1O7PA 4AAYB 2HMLA 2ZYLA 3EQQA 3GZXA 4HKVA 2JO6A 2XR8A 4QUPA 5BOKA 1NYKA 2NUMA 3DQYA 4QDFB 3GZYA 1L0LE 4HM8A 1UUWA 1ZRTE 4NBDD 3VCAA 1SQQE 2BMOA 2DE5D 4NBHD 2XRXA 3GOBA 3CWBE 3CX5E 5KLIC 3L73E 2JZAA 3D89A 2NVGA 3H1IE 1O7GA 1Q90C 1VF5D 2B24A 3H1KE 1SQVE 2I7FA 3CXHE 1O7NA 1FQTA 4NBBD 2A06E 4HM2A 4HM5A 2E4QA 2E75D 1L0NE 3L70E 4H44D 4HM0A 1EZVE 2HMMA 2HMOA 4NBCD 1P84E 4HM7A 1PPJE 2QJKC 3GL2A 3L71E 2HMJA 2QJPC 4HM1A 2DE6D 3GCEA 1NTME 3VMGD 4P1CH 3GL0A 1KYOE 2BMQA 1NTZE 2E74D 2FYUE 5CXMA 2FYNC 3GTSA 3EN1A 3FOUA 2YFJA 4H13D 1KB9E 2HMNA 2HMKA 2ZT9D 1RFSA 2Q3WA 3BCCE 4HM3A 1NU1E 2NWFA 2IBZE 2XSOA 2NVFA 3L72E 1EG9A 2QJYC 3VMID 3L75E 2YIUC 2D2CD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O7M A;  1VM9 A;  1O7H A;  1SQB E;  4PD4 E;  4HJL A;  4NBE D;  2NVE A;  3H1J E;  3H1L E;  1UUV A;  3TGU E;  3GB4 A;  1SQP E;  1VCK A;  5KKZ C;  2BMR A;  4QCK A;  5HL4 A;  1O7W A;  4NB8 D;  2GBW A;  4P1B H;  3VMH D;  2YVJ B;  4EMJ B;  4HM6 A;  4QUQ A;  2YFI A;  4NBF D;  1ULJ A;  4QDF A;  4PV1 D;  3VCP A;  4NBG D;  4U3F E;  1SQX E;  2BCC E;  2CKF A;  1BCC E;  4AIV A;  1SJG A;  5AEU A;  1ULI A;  3GKE A;  3H1H E;  5KLV E;  3AZC A;  5AEW A;  2XSH A;  3GTE A;  1NDO A;  1G8K B;  1JM1 A;  3L74 E;  2NUK A;  4QDC A;  2E76 D;  3C0D A;  4HM4 A;  4OGQ D;  1BE3 E;  1NTK E;  2QPZ A;  4QUR A;  4QDD A;  4NB9 D;  2E4P A;  1WQL A;  2DE7 D;  2YFL A;  1PP9 E;  2B1X A;  1G8J B;  4H0L D;  2GBX A;  3N0Q A;  4NBA D;  1RIE A;  1O7P A;  4AAY B;  2HML A;  2ZYL A;  3EQQ A;  3GZX A;  4HKV A;  2JO6 A;  2XR8 A;  4QUP A;  5BOK A;  1NYK A;  2NUM A;  3DQY A;  4QDF B;  3GZY A;  1L0L E;  4HM8 A;  1UUW A;  1ZRT E;  4NBD D;  3VCA A;  1SQQ E;  2BMO A;  2DE5 D;  4NBH D;  2XRX A;  3GOB A;  3CWB E;  3CX5 E;  5KLI C;  3L73 E;  2JZA A;  3D89 A;  2NVG A;  3H1I E;  1O7G A;  1Q90 C;  1VF5 D;  2B24 A;  3H1K E;  1SQV E;  2I7F A;  3CXH E;  1O7N A;  1FQT A;  4NBB D;  2A06 E;  4HM2 A;  4HM5 A;  2E4Q A;  2E75 D;  1L0N E;  3L70 E;  4H44 D;  4HM0 A;  1EZV E;  2HMM A;  2HMO A;  4NBC D;  1P84 E;  4HM7 A;  1PPJ E;  2QJK C;  3GL2 A;  3L71 E;  2HMJ A;  2QJP C;  4HM1 A;  2DE6 D;  3GCE A;  1NTM E;  3VMG D;  4P1C H;  3GL0 A;  1KYO E;  2BMQ A;  1NTZ E;  2E74 D;  2FYU E;  5CXM A;  2FYN C;  3GTS A;  3EN1 A;  3FOU A;  2YFJ A;  4H13 D;  1KB9 E;  2HMN A;  2HMK A;  2ZT9 D;  1RFS A;  2Q3W A;  3BCC E;  4HM3 A;  1NU1 E;  2NWF A;  2IBZ E;  2XSO A;  2NVF A;  3L72 E;  1EG9 A;  2QJY C;  3VMI D;  3L75 E;  2YIU C;  2D2C D; 
#chains in the Genus database with same CATH topology
 1O7M A;  1VM9 A;  1O7H A;  1SQB E;  4PD4 E;  4HJL A;  4NBE D;  2NVE A;  3H1J E;  3H1L E;  1UUV A;  3TGU E;  3GB4 A;  1SQP E;  1VCK A;  5KKZ C;  2BMR A;  4QCK A;  5HL4 A;  1O7W A;  4NB8 D;  2GBW A;  4P1B H;  3VMH D;  2YVJ B;  4EMJ B;  4HM6 A;  4QUQ A;  2YFI A;  4NBF D;  1ULJ A;  4QDF A;  4PV1 D;  3VCP A;  4NBG D;  4U3F E;  1SQX E;  2BCC E;  2CKF A;  1BCC E;  4AIV A;  1SJG A;  5AEU A;  1ULI A;  3GKE A;  3H1H E;  5KLV E;  3AZC A;  5AEW A;  2XSH A;  3GTE A;  1NDO A;  1G8K B;  1JM1 A;  3L74 E;  2NUK A;  4QDC A;  2E76 D;  3C0D A;  4HM4 A;  4OGQ D;  1BE3 E;  1NTK E;  2QPZ A;  4QUR A;  4QDD A;  4NB9 D;  2E4P A;  1WQL A;  2DE7 D;  2YFL A;  1PP9 E;  2B1X A;  1G8J B;  4H0L D;  2GBX A;  3N0Q A;  4NBA D;  1RIE A;  1O7P A;  4AAY B;  2HML A;  2ZYL A;  3EQQ A;  3GZX A;  4HKV A;  2JO6 A;  2XR8 A;  4QUP A;  5BOK A;  1NYK A;  2NUM A;  3DQY A;  4QDF B;  3GZY A;  1L0L E;  4HM8 A;  1UUW A;  1ZRT E;  4NBD D;  3VCA A;  1SQQ E;  2BMO A;  2DE5 D;  4NBH D;  2XRX A;  3GOB A;  3CWB E;  3CX5 E;  5KLI C;  3L73 E;  2JZA A;  3D89 A;  2NVG A;  3H1I E;  1O7G A;  1Q90 C;  1VF5 D;  2B24 A;  3H1K E;  1SQV E;  2I7F A;  3CXH E;  1O7N A;  1FQT A;  4NBB D;  2A06 E;  4HM2 A;  4HM5 A;  2E4Q A;  2E75 D;  1L0N E;  3L70 E;  4H44 D;  4HM0 A;  1EZV E;  2HMM A;  2HMO A;  4NBC D;  1P84 E;  4HM7 A;  1PPJ E;  2QJK C;  3GL2 A;  3L71 E;  2HMJ A;  2QJP C;  4HM1 A;  2DE6 D;  3GCE A;  1NTM E;  3VMG D;  4P1C H;  3GL0 A;  1KYO E;  2BMQ A;  1NTZ E;  2E74 D;  2FYU E;  5CXM A;  2FYN C;  3GTS A;  3EN1 A;  3FOU A;  2YFJ A;  4H13 D;  1KB9 E;  2HMN A;  2HMK A;  2ZT9 D;  1RFS A;  2Q3W A;  3BCC E;  4HM3 A;  1NU1 E;  2NWF A;  2IBZ E;  2XSO A;  2NVF A;  3L72 E;  1EG9 A;  2QJY C;  3VMI D;  3L75 E;  2YIU C;  2D2C D; 
#chains in the Genus database with same CATH homology
 1O7M A;  1VM9 A;  1O7H A;  1SQB E;  4PD4 E;  4HJL A;  4NBE D;  2NVE A;  3H1J E;  3H1L E;  1UUV A;  3TGU E;  3GB4 A;  1SQP E;  1VCK A;  5KKZ C;  2BMR A;  4QCK A;  5HL4 A;  1O7W A;  4NB8 D;  2GBW A;  4P1B H;  3VMH D;  2YVJ B;  4EMJ B;  4HM6 A;  4QUQ A;  2YFI A;  4NBF D;  1ULJ A;  4QDF A;  4PV1 D;  3VCP A;  4NBG D;  4U3F E;  1SQX E;  2BCC E;  2CKF A;  1BCC E;  4AIV A;  1SJG A;  5AEU A;  1ULI A;  3GKE A;  3H1H E;  5KLV E;  3AZC A;  5AEW A;  2XSH A;  3GTE A;  1NDO A;  1G8K B;  1JM1 A;  3L74 E;  2NUK A;  4QDC A;  2E76 D;  3C0D A;  4HM4 A;  4OGQ D;  1BE3 E;  1NTK E;  2QPZ A;  4QUR A;  4QDD A;  4NB9 D;  2E4P A;  1WQL A;  2DE7 D;  2YFL A;  1PP9 E;  2B1X A;  1G8J B;  4H0L D;  2GBX A;  3N0Q A;  4NBA D;  1RIE A;  1O7P A;  4AAY B;  2HML A;  2ZYL A;  3EQQ A;  3GZX A;  4HKV A;  2JO6 A;  2XR8 A;  4QUP A;  5BOK A;  1NYK A;  2NUM A;  3DQY A;  4QDF B;  3GZY A;  1L0L E;  4HM8 A;  1UUW A;  1ZRT E;  4NBD D;  3VCA A;  1SQQ E;  2BMO A;  2DE5 D;  4NBH D;  2XRX A;  3GOB A;  3CWB E;  3CX5 E;  5KLI C;  3L73 E;  2JZA A;  3D89 A;  2NVG A;  3H1I E;  1O7G A;  1Q90 C;  1VF5 D;  2B24 A;  3H1K E;  1SQV E;  2I7F A;  3CXH E;  1O7N A;  1FQT A;  4NBB D;  2A06 E;  4HM2 A;  4HM5 A;  2E4Q A;  2E75 D;  1L0N E;  3L70 E;  4H44 D;  4HM0 A;  1EZV E;  2HMM A;  2HMO A;  4NBC D;  1P84 E;  4HM7 A;  1PPJ E;  2QJK C;  3GL2 A;  3L71 E;  2HMJ A;  2QJP C;  4HM1 A;  2DE6 D;  3GCE A;  1NTM E;  3VMG D;  4P1C H;  3GL0 A;  1KYO E;  2BMQ A;  1NTZ E;  2E74 D;  2FYU E;  5CXM A;  2FYN C;  3GTS A;  3EN1 A;  3FOU A;  2YFJ A;  4H13 D;  1KB9 E;  2HMN A;  2HMK A;  2ZT9 D;  1RFS A;  2Q3W A;  3BCC E;  4HM3 A;  1NU1 E;  2NWF A;  2IBZ E;  2XSO A;  2NVF A;  3L72 E;  1EG9 A;  2QJY C;  3VMI D;  3L75 E;  2YIU C;  2D2C D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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