2DEKA

Crystal structure of project id ph0725 from pyrococcus horikoshii ot3 at 1.65 a resolution
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable diphthine synthase
publication title Crystal structure of project ID PH0725 from Pyrococcus horikoshii OT3 at 1.65 A resolution
rcsb
source organism Pyrococcus horikoshii
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2dekA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2dekA01
2PB6A 2EH5A 2EL0A 1PJQA 2EH4A 2EK4A 2E0NA 2ZVBA 2P5FA 2PCGA 2DEKA 2EN5A 2BB3A 2E8HA 2ED3A 2DSIA 2Z6RA 2EGBA 2EMRA 2PB4A 2EHLA 2PCMA 2OWGA 2E17A 2ELDA 2PCAA 2HUXA 2EL2A 2E15A 2P9DA 3NDCA 2DXWA 2EK3A 2E8QA 2QBUA 2EKAA 2ED5A 2EHCA 2PCKA 2EJJA 2YBQA 2E08A 2EGLA 2HUVA 2YBOA 5HW4A 1S4DA 2OWUA 3KWPA 2ENIA 3HH1A 1PJSA 2EGSA 3FQ6A 2EJKA 2E07A 2DV4A 2DXXA 1V9AA 2PB5A 1CBFA 2DSHA 3I4TA 2DXVA 1VA0A 2DV5A 2EJZA 2DV3A 2P6DA 3NEIA 2EK7A 2E4NA 2E0KA 2NPNA 2EK2A 2PCIA 2ELEA 1VHVA 1VE2A 2OWKA 2E8RA 2PCHA 4E16A 2DSGA 2P5CA 3FFYA 1WDEA 1VCEA 2HUTA 2OWFA 2ZVCA 3ND1A 2E8SA 2E16A 2CBFA 2HUQA 2P6KA 2P2XA 2P6IA 2OWVA 2EEQA 2EL3A 2P6LA 1PJTA 2HR8A 1WNGA 2DV7A 2EH2A 1WYZA 2EMUA 3NUTA 2E7RA 2E4RA 2EL1A
chains in the Genus database with same CATH superfamily
2PB6A 3UTDA 4EB3A 3KEMA 2EH5A 3SZOA 2EL0A 1PJQA 2EH4A 2EK4A 2E0NA 2ZVBA 2P5FA 2PCGA 2DEKA 3T0GA 2EN5A 2BB3A 2E8HA 2ED3A 3UV6A 2DSIA 2Z6RA 2EGBA 2EMRA 2PB4A 3SZLA 2EHLA 2PCMA 2OWGA 2E17A 2ELDA 3KELA 2PCAA 4H4CA 2HUXA 2EL2A 2E15A 2P9DA 3NDCA 2DXWA 2EK3A 3KEFA 2E8QA 2QBUA 3LMMA 3F7TA 2EKAA 2ED5A 2EHCA 4MV5A 2PCKA 2EJJA 3KE9A 2YBQA 3UTCA 2E08A 2EGLA 2HUVA 2YBOA 5HW4A 1S4DA 4MUYA 2OWUA 3KWPA 3T0FA 3ZGNA 2ENIA 3HH1A 1PJSA 2EGSA 3FQ6A 2EJKA 2E07A 3UV3A 2DV4A 2DXXA 1V9AA 2PB5A 1CBFA 2DSHA 3I4TA 2DXVA 1VA0A 2DV5A 4MV0A 2EJZA 3UV7A 2DV3A 2P6DA 3NEIA 2EK7A 3DNFA 2E4NA 3KE8A 2E0KA 2NPNA 2EK2A 2PCIA 3URKA 2ELEA 1VHVA 1VE2A 4N7BA 2OWKA 2E8RA 2PCHA 4E16A 2DSGA 2P5CA 4H4EA 3FFYA 3ZGLA 1WDEA 1VCEA 2HUTA 2OWFA 2ZVCA 3ND1A 2E8SA 2E16A 2CBFA 3SZUA 2HUQA 2P6KA 2P2XA 2P6IA 2OWVA 4MUXA 2EEQA 2EL3A 2KYYA 2P6LA 3UWMA 1PJTA 2HR8A 1WNGA 3TIXB 4H4DA 2DV7A 2EH2A 1WYZA 2EMUA 3NUTA 2E7RA 2E4RA 2EL1A
chains in the Genus database with same CATH topology
2PB6A 3UTDA 4EB3A 3KEMA 2EH5A 3SZOA 2EL0A 1PJQA 2EH4A 2EK4A 2E0NA 2ZVBA 2P5FA 2PCGA 2DEKA 3T0GA 2EN5A 2BB3A 2E8HA 2ED3A 3UV6A 2DSIA 2Z6RA 2EGBA 2EMRA 2PB4A 3SZLA 2EHLA 2PCMA 2OWGA 2E17A 2ELDA 3KELA 2PCAA 4H4CA 2HUXA 2EL2A 2E15A 2P9DA 3NDCA 2DXWA 2EK3A 3KEFA 2E8QA 2QBUA 3LMMA 3F7TA 2EKAA 2ED5A 2EHCA 4MV5A 2PCKA 2EJJA 3KE9A 2YBQA 3UTCA 2E08A 2EGLA 2HUVA 2YBOA 5HW4A 1S4DA 4MUYA 2OWUA 3KWPA 3T0FA 3ZGNA 2ENIA 3HH1A 1PJSA 2EGSA 3FQ6A 2EJKA 2E07A 3UV3A 2DV4A 2DXXA 1V9AA 2PB5A 1CBFA 2DSHA 3I4TA 2DXVA 1VA0A 2DV5A 4MV0A 2EJZA 3UV7A 2DV3A 2P6DA 3NEIA 2EK7A 3DNFA 2E4NA 3KE8A 2E0KA 2NPNA 2EK2A 2PCIA 3URKA 2ELEA 1VHVA 1VE2A 4N7BA 2OWKA 2E8RA 2PCHA 4E16A 2DSGA 2P5CA 4H4EA 3FFYA 3ZGLA 1WDEA 1VCEA 2HUTA 2OWFA 2ZVCA 3ND1A 2E8SA 2E16A 2CBFA 3SZUA 2HUQA 2P6KA 2P2XA 2P6IA 2OWVA 4MUXA 2EEQA 2EL3A 2KYYA 2P6LA 3UWMA 1PJTA 2HR8A 1WNGA 3TIXB 4H4DA 2DV7A 2EH2A 1WYZA 2EMUA 3NUTA 2E7RA 2E4RA 2EL1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PB6 A;  2EH5 A;  2EL0 A;  1PJQ A;  2EH4 A;  2EK4 A;  2E0N A;  2ZVB A;  2P5F A;  2PCG A;  2DEK A;  2EN5 A;  2BB3 A;  2E8H A;  2ED3 A;  2DSI A;  2Z6R A;  2EGB A;  2EMR A;  2PB4 A;  2EHL A;  2PCM A;  2OWG A;  2E17 A;  2ELD A;  2PCA A;  2HUX A;  2EL2 A;  2E15 A;  2P9D A;  3NDC A;  2DXW A;  2EK3 A;  2E8Q A;  2QBU A;  2EKA A;  2ED5 A;  2EHC A;  2PCK A;  2EJJ A;  2YBQ A;  2E08 A;  2EGL A;  2HUV A;  2YBO A;  5HW4 A;  1S4D A;  2OWU A;  3KWP A;  2ENI A;  3HH1 A;  1PJS A;  2EGS A;  3FQ6 A;  2EJK A;  2E07 A;  2DV4 A;  2DXX A;  1V9A A;  2PB5 A;  1CBF A;  2DSH A;  3I4T A;  2DXV A;  1VA0 A;  2DV5 A;  2EJZ A;  2DV3 A;  2P6D A;  3NEI A;  2EK7 A;  2E4N A;  2E0K A;  2NPN A;  2EK2 A;  2PCI A;  2ELE A;  1VHV A;  1VE2 A;  2OWK A;  2E8R A;  2PCH A;  4E16 A;  2DSG A;  2P5C A;  3FFY A;  1WDE A;  1VCE A;  2HUT A;  2OWF A;  2ZVC A;  3ND1 A;  2E8S A;  2E16 A;  2CBF A;  2HUQ A;  2P6K A;  2P2X A;  2P6I A;  2OWV A;  2EEQ A;  2EL3 A;  2P6L A;  1PJT A;  2HR8 A;  1WNG A;  2DV7 A;  2EH2 A;  1WYZ A;  2EMU A;  3NUT A;  2E7R A;  2E4R A;  2EL1 A; 
#chains in the Genus database with same CATH topology
 2PB6 A;  3UTD A;  4EB3 A;  3KEM A;  2EH5 A;  3SZO A;  2EL0 A;  1PJQ A;  2EH4 A;  2EK4 A;  2E0N A;  2ZVB A;  2P5F A;  2PCG A;  2DEK A;  3T0G A;  2EN5 A;  2BB3 A;  2E8H A;  2ED3 A;  3UV6 A;  2DSI A;  2Z6R A;  2EGB A;  2EMR A;  2PB4 A;  3SZL A;  2EHL A;  2PCM A;  2OWG A;  2E17 A;  2ELD A;  3KEL A;  2PCA A;  4H4C A;  2HUX A;  2EL2 A;  2E15 A;  2P9D A;  3NDC A;  2DXW A;  2EK3 A;  3KEF A;  2E8Q A;  2QBU A;  3LMM A;  3F7T A;  2EKA A;  2ED5 A;  2EHC A;  4MV5 A;  2PCK A;  2EJJ A;  3KE9 A;  2YBQ A;  3UTC A;  2E08 A;  2EGL A;  2HUV A;  2YBO A;  5HW4 A;  1S4D A;  4MUY A;  2OWU A;  3KWP A;  3T0F A;  3ZGN A;  2ENI A;  3HH1 A;  1PJS A;  2EGS A;  3FQ6 A;  2EJK A;  2E07 A;  3UV3 A;  2DV4 A;  2DXX A;  1V9A A;  2PB5 A;  1CBF A;  2DSH A;  3I4T A;  2DXV A;  1VA0 A;  2DV5 A;  4MV0 A;  2EJZ A;  3UV7 A;  2DV3 A;  2P6D A;  3NEI A;  2EK7 A;  3DNF A;  2E4N A;  3KE8 A;  2E0K A;  2NPN A;  2EK2 A;  2PCI A;  3URK A;  2ELE A;  1VHV A;  1VE2 A;  4N7B A;  2OWK A;  2E8R A;  2PCH A;  4E16 A;  2DSG A;  2P5C A;  4H4E A;  3FFY A;  3ZGL A;  1WDE A;  1VCE A;  2HUT A;  2OWF A;  2ZVC A;  3ND1 A;  2E8S A;  2E16 A;  2CBF A;  3SZU A;  2HUQ A;  2P6K A;  2P2X A;  2P6I A;  2OWV A;  4MUX A;  2EEQ A;  2EL3 A;  2KYY A;  2P6L A;  3UWM A;  1PJT A;  2HR8 A;  1WNG A;  3TIX B;  4H4D A;  2DV7 A;  2EH2 A;  1WYZ A;  2EMU A;  3NUT A;  2E7R A;  2E4R A;  2EL1 A; 
#chains in the Genus database with same CATH homology
 2PB6 A;  3UTD A;  4EB3 A;  3KEM A;  2EH5 A;  3SZO A;  2EL0 A;  1PJQ A;  2EH4 A;  2EK4 A;  2E0N A;  2ZVB A;  2P5F A;  2PCG A;  2DEK A;  3T0G A;  2EN5 A;  2BB3 A;  2E8H A;  2ED3 A;  3UV6 A;  2DSI A;  2Z6R A;  2EGB A;  2EMR A;  2PB4 A;  3SZL A;  2EHL A;  2PCM A;  2OWG A;  2E17 A;  2ELD A;  3KEL A;  2PCA A;  4H4C A;  2HUX A;  2EL2 A;  2E15 A;  2P9D A;  3NDC A;  2DXW A;  2EK3 A;  3KEF A;  2E8Q A;  2QBU A;  3LMM A;  3F7T A;  2EKA A;  2ED5 A;  2EHC A;  4MV5 A;  2PCK A;  2EJJ A;  3KE9 A;  2YBQ A;  3UTC A;  2E08 A;  2EGL A;  2HUV A;  2YBO A;  5HW4 A;  1S4D A;  4MUY A;  2OWU A;  3KWP A;  3T0F A;  3ZGN A;  2ENI A;  3HH1 A;  1PJS A;  2EGS A;  3FQ6 A;  2EJK A;  2E07 A;  3UV3 A;  2DV4 A;  2DXX A;  1V9A A;  2PB5 A;  1CBF A;  2DSH A;  3I4T A;  2DXV A;  1VA0 A;  2DV5 A;  4MV0 A;  2EJZ A;  3UV7 A;  2DV3 A;  2P6D A;  3NEI A;  2EK7 A;  3DNF A;  2E4N A;  3KE8 A;  2E0K A;  2NPN A;  2EK2 A;  2PCI A;  3URK A;  2ELE A;  1VHV A;  1VE2 A;  4N7B A;  2OWK A;  2E8R A;  2PCH A;  4E16 A;  2DSG A;  2P5C A;  4H4E A;  3FFY A;  3ZGL A;  1WDE A;  1VCE A;  2HUT A;  2OWF A;  2ZVC A;  3ND1 A;  2E8S A;  2E16 A;  2CBF A;  3SZU A;  2HUQ A;  2P6K A;  2P2X A;  2P6I A;  2OWV A;  4MUX A;  2EEQ A;  2EL3 A;  2KYY A;  2P6L A;  3UWM A;  1PJT A;  2HR8 A;  1WNG A;  3TIX B;  4H4D A;  2DV7 A;  2EH2 A;  1WYZ A;  2EMU A;  3NUT A;  2E7R A;  2E4R A;  2EL1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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