2DEKA

Crystal structure of project id ph0725 from pyrococcus horikoshii ot3 at 1.65 a resolution
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of project ID PH0725 from Pyrococcus horikoshii OT3 at 1.65 A resolution
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2dekA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2dekA01
2E16A 1VE2A 2EK2A 2DEKA 2EMRA 2EGLA 2EK7A 2E17A 1VA0A 3ND1A 3NUTA 2P6DA 2E15A 2EHLA 2ED5A 3NEIA 2EH4A 2PB6A 2HUQA 2ELDA 2DXXA 2CBFA 2P6LA 2EJZA 2HUXA 2HUTA 2EK3A 2DXVA 3HH1A 1WNGA 2DSIA 2EH2A 2E4NA 2EKAA 2EK4A 2OWVA 1PJTA 2HUVA 2PB4A 2E8QA 2EMUA 2EGSA 1VHVA 2P5CA 1PJSA 2BB3A 2QBUA 3NDCA 5HW4A 2DV7A 3I4TA 2P6IA 2E8RA 2PCIA 2E7RA 3KWPA 3FQ6A 2DSGA 2EL2A 2ENIA 2PCAA 1WYZA 2NPNA 2P9DA 2OWGA 2E8SA 2EJKA 1V9AA 2DV5A 2DXWA 4E16A 2DSHA 2PB5A 1CBFA 2EL1A 2PCHA 1S4DA 2ED3A 2ZVCA 2E07A 2EJJA 2EL3A 2OWUA 2PCGA 2E4RA 1VCEA 2E8HA 1PJQA 2YBQA 2ELEA 2OWKA 2PCKA 2YBOA 2EH5A 2E0NA 2P5FA 2P6KA 2Z6RA 2DV4A 2EGBA 3FFYA 2E08A 2OWFA 2PCMA 2HR8A 2E0KA 1WDEA 2EHCA 2EEQA 2ZVBA 2EN5A 2EL0A 2DV3A 2P2XA
chains in the Genus database with same CATH superfamily
2E16A 3KEMA 1VE2A 2EK2A 2DEKA 2EMRA 2EGLA 2EK7A 4MUYA 2E17A 1VA0A 3ND1A 3KEFA 4H4CA 3NUTA 2P6DA 3SZOA 2E15A 2EHLA 2ED5A 3NEIA 3LMMA 2EH4A 3UV6A 2PB6A 2HUQA 3ZGNA 2ELDA 4MV5A 3KE8A 2DXXA 4EB3A 2CBFA 2P6LA 2EJZA 2HUXA 2HUTA 3KELA 2EK3A 2DXVA 3HH1A 3TIXB 1WNGA 2DSIA 3URKA 3KE9A 2EH2A 2E4NA 2EKAA 4N7BA 3UTCA 3SZLA 2EK4A 4H4DA 3ZGLA 2OWVA 1PJTA 2HUVA 2PB4A 2E8QA 2EMUA 3UWMA 2EGSA 4MUXA 1VHVA 2P5CA 1PJSA 2BB3A 2QBUA 3NDCA 5HW4A 3T0GA 2DV7A 3I4TA 2P6IA 2E8RA 2PCIA 2E7RA 3KWPA 3FQ6A 3UTDA 2DSGA 2EL2A 2ENIA 2PCAA 1WYZA 2NPNA 2P9DA 2OWGA 3UV7A 2E8SA 2EJKA 1V9AA 2DV5A 2DXWA 4E16A 2DSHA 3DNFA 2PB5A 1CBFA 2EL1A 2PCHA 1S4DA 2ED3A 2ZVCA 2E07A 2EJJA 2EL3A 2OWUA 2PCGA 2E4RA 1VCEA 2E8HA 1PJQA 2YBQA 4MV0A 2ELEA 3SZUA 2OWKA 2PCKA 2YBOA 2EH5A 4H4EA 2E0NA 2P5FA 2P6KA 3F7TA 2Z6RA 3T0FA 2DV4A 2EGBA 3FFYA 2E08A 2OWFA 2PCMA 3UV3A 2HR8A 2E0KA 1WDEA 2EHCA 2KYYA 2EEQA 2ZVBA 2EN5A 2EL0A 2DV3A 2P2XA
chains in the Genus database with same CATH topology
2E16A 3KEMA 1VE2A 2EK2A 2DEKA 2EMRA 2EGLA 2EK7A 4MUYA 2E17A 1VA0A 3ND1A 3KEFA 4H4CA 3NUTA 2P6DA 3SZOA 2E15A 2EHLA 2ED5A 3NEIA 3LMMA 2EH4A 3UV6A 2PB6A 2HUQA 3ZGNA 2ELDA 4MV5A 3KE8A 2DXXA 4EB3A 2CBFA 2P6LA 2EJZA 2HUXA 2HUTA 3KELA 2EK3A 2DXVA 3HH1A 3TIXB 1WNGA 2DSIA 3URKA 3KE9A 2EH2A 2E4NA 2EKAA 4N7BA 3UTCA 3SZLA 2EK4A 4H4DA 3ZGLA 2OWVA 1PJTA 2HUVA 2PB4A 2E8QA 2EMUA 3UWMA 2EGSA 4MUXA 1VHVA 2P5CA 1PJSA 2BB3A 2QBUA 3NDCA 5HW4A 3T0GA 2DV7A 3I4TA 2P6IA 2E8RA 2PCIA 2E7RA 3KWPA 3FQ6A 3UTDA 2DSGA 2EL2A 2ENIA 2PCAA 1WYZA 2NPNA 2P9DA 2OWGA 3UV7A 2E8SA 2EJKA 1V9AA 2DV5A 2DXWA 4E16A 2DSHA 3DNFA 2PB5A 1CBFA 2EL1A 2PCHA 1S4DA 2ED3A 2ZVCA 2E07A 2EJJA 2EL3A 2OWUA 2PCGA 2E4RA 1VCEA 2E8HA 1PJQA 2YBQA 4MV0A 2ELEA 3SZUA 2OWKA 2PCKA 2YBOA 2EH5A 4H4EA 2E0NA 2P5FA 2P6KA 3F7TA 2Z6RA 3T0FA 2DV4A 2EGBA 3FFYA 2E08A 2OWFA 2PCMA 3UV3A 2HR8A 2E0KA 1WDEA 2EHCA 2KYYA 2EEQA 2ZVBA 2EN5A 2EL0A 2DV3A 2P2XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E16 A;  1VE2 A;  2EK2 A;  2DEK A;  2EMR A;  2EGL A;  2EK7 A;  2E17 A;  1VA0 A;  3ND1 A;  3NUT A;  2P6D A;  2E15 A;  2EHL A;  2ED5 A;  3NEI A;  2EH4 A;  2PB6 A;  2HUQ A;  2ELD A;  2DXX A;  2CBF A;  2P6L A;  2EJZ A;  2HUX A;  2HUT A;  2EK3 A;  2DXV A;  3HH1 A;  1WNG A;  2DSI A;  2EH2 A;  2E4N A;  2EKA A;  2EK4 A;  2OWV A;  1PJT A;  2HUV A;  2PB4 A;  2E8Q A;  2EMU A;  2EGS A;  1VHV A;  2P5C A;  1PJS A;  2BB3 A;  2QBU A;  3NDC A;  5HW4 A;  2DV7 A;  3I4T A;  2P6I A;  2E8R A;  2PCI A;  2E7R A;  3KWP A;  3FQ6 A;  2DSG A;  2EL2 A;  2ENI A;  2PCA A;  1WYZ A;  2NPN A;  2P9D A;  2OWG A;  2E8S A;  2EJK A;  1V9A A;  2DV5 A;  2DXW A;  4E16 A;  2DSH A;  2PB5 A;  1CBF A;  2EL1 A;  2PCH A;  1S4D A;  2ED3 A;  2ZVC A;  2E07 A;  2EJJ A;  2EL3 A;  2OWU A;  2PCG A;  2E4R A;  1VCE A;  2E8H A;  1PJQ A;  2YBQ A;  2ELE A;  2OWK A;  2PCK A;  2YBO A;  2EH5 A;  2E0N A;  2P5F A;  2P6K A;  2Z6R A;  2DV4 A;  2EGB A;  3FFY A;  2E08 A;  2OWF A;  2PCM A;  2HR8 A;  2E0K A;  1WDE A;  2EHC A;  2EEQ A;  2ZVB A;  2EN5 A;  2EL0 A;  2DV3 A;  2P2X A; 
#chains in the Genus database with same CATH topology
 2E16 A;  3KEM A;  1VE2 A;  2EK2 A;  2DEK A;  2EMR A;  2EGL A;  2EK7 A;  4MUY A;  2E17 A;  1VA0 A;  3ND1 A;  3KEF A;  4H4C A;  3NUT A;  2P6D A;  3SZO A;  2E15 A;  2EHL A;  2ED5 A;  3NEI A;  3LMM A;  2EH4 A;  3UV6 A;  2PB6 A;  2HUQ A;  3ZGN A;  2ELD A;  4MV5 A;  3KE8 A;  2DXX A;  4EB3 A;  2CBF A;  2P6L A;  2EJZ A;  2HUX A;  2HUT A;  3KEL A;  2EK3 A;  2DXV A;  3HH1 A;  3TIX B;  1WNG A;  2DSI A;  3URK A;  3KE9 A;  2EH2 A;  2E4N A;  2EKA A;  4N7B A;  3UTC A;  3SZL A;  2EK4 A;  4H4D A;  3ZGL A;  2OWV A;  1PJT A;  2HUV A;  2PB4 A;  2E8Q A;  2EMU A;  3UWM A;  2EGS A;  4MUX A;  1VHV A;  2P5C A;  1PJS A;  2BB3 A;  2QBU A;  3NDC A;  5HW4 A;  3T0G A;  2DV7 A;  3I4T A;  2P6I A;  2E8R A;  2PCI A;  2E7R A;  3KWP A;  3FQ6 A;  3UTD A;  2DSG A;  2EL2 A;  2ENI A;  2PCA A;  1WYZ A;  2NPN A;  2P9D A;  2OWG A;  3UV7 A;  2E8S A;  2EJK A;  1V9A A;  2DV5 A;  2DXW A;  4E16 A;  2DSH A;  3DNF A;  2PB5 A;  1CBF A;  2EL1 A;  2PCH A;  1S4D A;  2ED3 A;  2ZVC A;  2E07 A;  2EJJ A;  2EL3 A;  2OWU A;  2PCG A;  2E4R A;  1VCE A;  2E8H A;  1PJQ A;  2YBQ A;  4MV0 A;  2ELE A;  3SZU A;  2OWK A;  2PCK A;  2YBO A;  2EH5 A;  4H4E A;  2E0N A;  2P5F A;  2P6K A;  3F7T A;  2Z6R A;  3T0F A;  2DV4 A;  2EGB A;  3FFY A;  2E08 A;  2OWF A;  2PCM A;  3UV3 A;  2HR8 A;  2E0K A;  1WDE A;  2EHC A;  2KYY A;  2EEQ A;  2ZVB A;  2EN5 A;  2EL0 A;  2DV3 A;  2P2X A; 
#chains in the Genus database with same CATH homology
 2E16 A;  3KEM A;  1VE2 A;  2EK2 A;  2DEK A;  2EMR A;  2EGL A;  2EK7 A;  4MUY A;  2E17 A;  1VA0 A;  3ND1 A;  3KEF A;  4H4C A;  3NUT A;  2P6D A;  3SZO A;  2E15 A;  2EHL A;  2ED5 A;  3NEI A;  3LMM A;  2EH4 A;  3UV6 A;  2PB6 A;  2HUQ A;  3ZGN A;  2ELD A;  4MV5 A;  3KE8 A;  2DXX A;  4EB3 A;  2CBF A;  2P6L A;  2EJZ A;  2HUX A;  2HUT A;  3KEL A;  2EK3 A;  2DXV A;  3HH1 A;  3TIX B;  1WNG A;  2DSI A;  3URK A;  3KE9 A;  2EH2 A;  2E4N A;  2EKA A;  4N7B A;  3UTC A;  3SZL A;  2EK4 A;  4H4D A;  3ZGL A;  2OWV A;  1PJT A;  2HUV A;  2PB4 A;  2E8Q A;  2EMU A;  3UWM A;  2EGS A;  4MUX A;  1VHV A;  2P5C A;  1PJS A;  2BB3 A;  2QBU A;  3NDC A;  5HW4 A;  3T0G A;  2DV7 A;  3I4T A;  2P6I A;  2E8R A;  2PCI A;  2E7R A;  3KWP A;  3FQ6 A;  3UTD A;  2DSG A;  2EL2 A;  2ENI A;  2PCA A;  1WYZ A;  2NPN A;  2P9D A;  2OWG A;  3UV7 A;  2E8S A;  2EJK A;  1V9A A;  2DV5 A;  2DXW A;  4E16 A;  2DSH A;  3DNF A;  2PB5 A;  1CBF A;  2EL1 A;  2PCH A;  1S4D A;  2ED3 A;  2ZVC A;  2E07 A;  2EJJ A;  2EL3 A;  2OWU A;  2PCG A;  2E4R A;  1VCE A;  2E8H A;  1PJQ A;  2YBQ A;  4MV0 A;  2ELE A;  3SZU A;  2OWK A;  2PCK A;  2YBO A;  2EH5 A;  4H4E A;  2E0N A;  2P5F A;  2P6K A;  3F7T A;  2Z6R A;  3T0F A;  2DV4 A;  2EGB A;  3FFY A;  2E08 A;  2OWF A;  2PCM A;  3UV3 A;  2HR8 A;  2E0K A;  1WDE A;  2EHC A;  2KYY A;  2EEQ A;  2ZVB A;  2EN5 A;  2EL0 A;  2DV3 A;  2P2X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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