2DEKA

Crystal structure of project id ph0725 from pyrococcus horikoshii ot3 at 1.65 a resolution
Total Genus 83
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Probable diphthine synthase
publication title Crystal structure of project ID PH0725 from Pyrococcus horikoshii OT3 at 1.65 A resolution
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2dekA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2dekA01
2DSHA 2EK7A 2E0KA 2P5CA 2EN5A 2E15A 2DXXA 2CBFA 2DXVA 5HW4A 2PB5A 2EKAA 2DV4A 2P9DA 2E7RA 2E8QA 3NDCA 2EHCA 2HUXA 2P6DA 2PB6A 2E17A 2PCGA 2HUQA 3NUTA 2PCMA 2EK3A 2HUTA 2OWVA 2PB4A 2BB3A 2EH2A 2E08A 2NPNA 4E16A 1VHVA 2P6IA 2DSIA 1VE2A 2P6LA 2EJZA 2QBUA 2OWUA 2HUVA 2EGSA 2PCAA 2EJJA 2EL1A 2ZVCA 2EH4A 2EMRA 2Z6RA 2EGLA 2DV5A 1WDEA 1PJTA 3FFYA 2E0NA 3NEIA 2E07A 3I4TA 2EK2A 1S4DA 2YBQA 2ELEA 2ENIA 2PCKA 2E16A 2OWFA 2EL2A 2EGBA 2DV7A 2YBOA 2ED3A 2EK4A 2P5FA 2EMUA 2DXWA 1VA0A 2EL0A 1CBFA 2E8SA 2E4NA 2PCHA 1VCEA 2PCIA 2EHLA 2P6KA 3ND1A 2DEKA 3KWPA 1PJQA 2E4RA 3FQ6A 2DSGA 1V9AA 2ZVBA 2ED5A 1PJSA 2E8HA 2EEQA 2EH5A 2OWKA 2ELDA 2EL3A 1WYZA 2DV3A 1WNGA 2OWGA 2E8RA 3HH1A 2HR8A 2P2XA 2EJKA
chains in the Genus database with same CATH superfamily
4H4CA 2DSHA 2EK7A 2E0KA 2P5CA 2EN5A 2E15A 2DXXA 2CBFA 2DXVA 5HW4A 2PB5A 2EKAA 2DV4A 3URKA 2P9DA 2E7RA 3ZGLA 3KE9A 2E8QA 3KEMA 3SZUA 3NDCA 2EHCA 2HUXA 2P6DA 2PB6A 2E17A 3KE8A 2PCGA 2HUQA 4MV5A 3NUTA 3KEFA 4N7BA 2PCMA 2EK3A 3SZLA 2HUTA 2OWVA 2PB4A 2BB3A 2EH2A 2E08A 2NPNA 3UWMA 4E16A 1VHVA 2P6IA 2DSIA 1VE2A 2P6LA 2EJZA 3UV3A 2QBUA 2OWUA 3T0GA 4MUYA 2HUVA 2EGSA 2PCAA 2EJJA 2EL1A 2ZVCA 4EB3A 2EH4A 2EMRA 2Z6RA 2EGLA 2DV5A 1WDEA 1PJTA 3FFYA 2E0NA 3UV7A 3T0FA 3NEIA 2E07A 3I4TA 2EK2A 1S4DA 2YBQA 2ELEA 2ENIA 3ZGNA 2PCKA 3UTDA 2E16A 3LMMA 2OWFA 3DNFA 2EL2A 2EGBA 2DV7A 2YBOA 2ED3A 2EK4A 4MUXA 2P5FA 2EMUA 2DXWA 2KYYA 1VA0A 2EL0A 1CBFA 2E8SA 2E4NA 3UTCA 2PCHA 1VCEA 2PCIA 2EHLA 2P6KA 3ND1A 2DEKA 3KWPA 1PJQA 2E4RA 4MV0A 3TIXB 4H4EA 3FQ6A 2DSGA 1V9AA 2ZVBA 2ED5A 1PJSA 2E8HA 2EEQA 3F7TA 2EH5A 2OWKA 2ELDA 3UV6A 2EL3A 3SZOA 1WYZA 2DV3A 1WNGA 4H4DA 2OWGA 2E8RA 3KELA 3HH1A 2HR8A 2P2XA 2EJKA
chains in the Genus database with same CATH topology
4H4CA 2DSHA 2EK7A 2E0KA 2P5CA 2EN5A 2E15A 2DXXA 2CBFA 2DXVA 5HW4A 2PB5A 2EKAA 2DV4A 3URKA 2P9DA 2E7RA 3ZGLA 3KE9A 2E8QA 3KEMA 3SZUA 3NDCA 2EHCA 2HUXA 2P6DA 2PB6A 2E17A 3KE8A 2PCGA 2HUQA 4MV5A 3NUTA 3KEFA 4N7BA 2PCMA 2EK3A 3SZLA 2HUTA 2OWVA 2PB4A 2BB3A 2EH2A 2E08A 2NPNA 3UWMA 4E16A 1VHVA 2P6IA 2DSIA 1VE2A 2P6LA 2EJZA 3UV3A 2QBUA 2OWUA 3T0GA 4MUYA 2HUVA 2EGSA 2PCAA 2EJJA 2EL1A 2ZVCA 4EB3A 2EH4A 2EMRA 2Z6RA 2EGLA 2DV5A 1WDEA 1PJTA 3FFYA 2E0NA 3UV7A 3T0FA 3NEIA 2E07A 3I4TA 2EK2A 1S4DA 2YBQA 2ELEA 2ENIA 3ZGNA 2PCKA 3UTDA 2E16A 3LMMA 2OWFA 3DNFA 2EL2A 2EGBA 2DV7A 2YBOA 2ED3A 2EK4A 4MUXA 2P5FA 2EMUA 2DXWA 2KYYA 1VA0A 2EL0A 1CBFA 2E8SA 2E4NA 3UTCA 2PCHA 1VCEA 2PCIA 2EHLA 2P6KA 3ND1A 2DEKA 3KWPA 1PJQA 2E4RA 4MV0A 3TIXB 4H4EA 3FQ6A 2DSGA 1V9AA 2ZVBA 2ED5A 1PJSA 2E8HA 2EEQA 3F7TA 2EH5A 2OWKA 2ELDA 3UV6A 2EL3A 3SZOA 1WYZA 2DV3A 1WNGA 4H4DA 2OWGA 2E8RA 3KELA 3HH1A 2HR8A 2P2XA 2EJKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DSH A;  2EK7 A;  2E0K A;  2P5C A;  2EN5 A;  2E15 A;  2DXX A;  2CBF A;  2DXV A;  5HW4 A;  2PB5 A;  2EKA A;  2DV4 A;  2P9D A;  2E7R A;  2E8Q A;  3NDC A;  2EHC A;  2HUX A;  2P6D A;  2PB6 A;  2E17 A;  2PCG A;  2HUQ A;  3NUT A;  2PCM A;  2EK3 A;  2HUT A;  2OWV A;  2PB4 A;  2BB3 A;  2EH2 A;  2E08 A;  2NPN A;  4E16 A;  1VHV A;  2P6I A;  2DSI A;  1VE2 A;  2P6L A;  2EJZ A;  2QBU A;  2OWU A;  2HUV A;  2EGS A;  2PCA A;  2EJJ A;  2EL1 A;  2ZVC A;  2EH4 A;  2EMR A;  2Z6R A;  2EGL A;  2DV5 A;  1WDE A;  1PJT A;  3FFY A;  2E0N A;  3NEI A;  2E07 A;  3I4T A;  2EK2 A;  1S4D A;  2YBQ A;  2ELE A;  2ENI A;  2PCK A;  2E16 A;  2OWF A;  2EL2 A;  2EGB A;  2DV7 A;  2YBO A;  2ED3 A;  2EK4 A;  2P5F A;  2EMU A;  2DXW A;  1VA0 A;  2EL0 A;  1CBF A;  2E8S A;  2E4N A;  2PCH A;  1VCE A;  2PCI A;  2EHL A;  2P6K A;  3ND1 A;  2DEK A;  3KWP A;  1PJQ A;  2E4R A;  3FQ6 A;  2DSG A;  1V9A A;  2ZVB A;  2ED5 A;  1PJS A;  2E8H A;  2EEQ A;  2EH5 A;  2OWK A;  2ELD A;  2EL3 A;  1WYZ A;  2DV3 A;  1WNG A;  2OWG A;  2E8R A;  3HH1 A;  2HR8 A;  2P2X A;  2EJK A; 
#chains in the Genus database with same CATH topology
 4H4C A;  2DSH A;  2EK7 A;  2E0K A;  2P5C A;  2EN5 A;  2E15 A;  2DXX A;  2CBF A;  2DXV A;  5HW4 A;  2PB5 A;  2EKA A;  2DV4 A;  3URK A;  2P9D A;  2E7R A;  3ZGL A;  3KE9 A;  2E8Q A;  3KEM A;  3SZU A;  3NDC A;  2EHC A;  2HUX A;  2P6D A;  2PB6 A;  2E17 A;  3KE8 A;  2PCG A;  2HUQ A;  4MV5 A;  3NUT A;  3KEF A;  4N7B A;  2PCM A;  2EK3 A;  3SZL A;  2HUT A;  2OWV A;  2PB4 A;  2BB3 A;  2EH2 A;  2E08 A;  2NPN A;  3UWM A;  4E16 A;  1VHV A;  2P6I A;  2DSI A;  1VE2 A;  2P6L A;  2EJZ A;  3UV3 A;  2QBU A;  2OWU A;  3T0G A;  4MUY A;  2HUV A;  2EGS A;  2PCA A;  2EJJ A;  2EL1 A;  2ZVC A;  4EB3 A;  2EH4 A;  2EMR A;  2Z6R A;  2EGL A;  2DV5 A;  1WDE A;  1PJT A;  3FFY A;  2E0N A;  3UV7 A;  3T0F A;  3NEI A;  2E07 A;  3I4T A;  2EK2 A;  1S4D A;  2YBQ A;  2ELE A;  2ENI A;  3ZGN A;  2PCK A;  3UTD A;  2E16 A;  3LMM A;  2OWF A;  3DNF A;  2EL2 A;  2EGB A;  2DV7 A;  2YBO A;  2ED3 A;  2EK4 A;  4MUX A;  2P5F A;  2EMU A;  2DXW A;  2KYY A;  1VA0 A;  2EL0 A;  1CBF A;  2E8S A;  2E4N A;  3UTC A;  2PCH A;  1VCE A;  2PCI A;  2EHL A;  2P6K A;  3ND1 A;  2DEK A;  3KWP A;  1PJQ A;  2E4R A;  4MV0 A;  3TIX B;  4H4E A;  3FQ6 A;  2DSG A;  1V9A A;  2ZVB A;  2ED5 A;  1PJS A;  2E8H A;  2EEQ A;  3F7T A;  2EH5 A;  2OWK A;  2ELD A;  3UV6 A;  2EL3 A;  3SZO A;  1WYZ A;  2DV3 A;  1WNG A;  4H4D A;  2OWG A;  2E8R A;  3KEL A;  3HH1 A;  2HR8 A;  2P2X A;  2EJK A; 
#chains in the Genus database with same CATH homology
 4H4C A;  2DSH A;  2EK7 A;  2E0K A;  2P5C A;  2EN5 A;  2E15 A;  2DXX A;  2CBF A;  2DXV A;  5HW4 A;  2PB5 A;  2EKA A;  2DV4 A;  3URK A;  2P9D A;  2E7R A;  3ZGL A;  3KE9 A;  2E8Q A;  3KEM A;  3SZU A;  3NDC A;  2EHC A;  2HUX A;  2P6D A;  2PB6 A;  2E17 A;  3KE8 A;  2PCG A;  2HUQ A;  4MV5 A;  3NUT A;  3KEF A;  4N7B A;  2PCM A;  2EK3 A;  3SZL A;  2HUT A;  2OWV A;  2PB4 A;  2BB3 A;  2EH2 A;  2E08 A;  2NPN A;  3UWM A;  4E16 A;  1VHV A;  2P6I A;  2DSI A;  1VE2 A;  2P6L A;  2EJZ A;  3UV3 A;  2QBU A;  2OWU A;  3T0G A;  4MUY A;  2HUV A;  2EGS A;  2PCA A;  2EJJ A;  2EL1 A;  2ZVC A;  4EB3 A;  2EH4 A;  2EMR A;  2Z6R A;  2EGL A;  2DV5 A;  1WDE A;  1PJT A;  3FFY A;  2E0N A;  3UV7 A;  3T0F A;  3NEI A;  2E07 A;  3I4T A;  2EK2 A;  1S4D A;  2YBQ A;  2ELE A;  2ENI A;  3ZGN A;  2PCK A;  3UTD A;  2E16 A;  3LMM A;  2OWF A;  3DNF A;  2EL2 A;  2EGB A;  2DV7 A;  2YBO A;  2ED3 A;  2EK4 A;  4MUX A;  2P5F A;  2EMU A;  2DXW A;  2KYY A;  1VA0 A;  2EL0 A;  1CBF A;  2E8S A;  2E4N A;  3UTC A;  2PCH A;  1VCE A;  2PCI A;  2EHL A;  2P6K A;  3ND1 A;  2DEK A;  3KWP A;  1PJQ A;  2E4R A;  4MV0 A;  3TIX B;  4H4E A;  3FQ6 A;  2DSG A;  1V9A A;  2ZVB A;  2ED5 A;  1PJS A;  2E8H A;  2EEQ A;  3F7T A;  2EH5 A;  2OWK A;  2ELD A;  3UV6 A;  2EL3 A;  3SZO A;  1WYZ A;  2DV3 A;  1WNG A;  4H4D A;  2OWG A;  2E8R A;  3KEL A;  3HH1 A;  2HR8 A;  2P2X A;  2EJK A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...