2DEKA

Crystal structure of project id ph0725 from pyrococcus horikoshii ot3 at 1.65 a resolution
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of project ID PH0725 from Pyrococcus horikoshii OT3 at 1.65 A resolution
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2dekA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2dekA01
2P9DA 1WDEA 2ED3A 2EK3A 2DEKA 2CBFA 2EK4A 2EH4A 2DV5A 2HUTA 2EK2A 2PCGA 2ENIA 1V9AA 1VHVA 3HH1A 2EKAA 2NPNA 2EJZA 2E08A 1S4DA 2P5FA 2DV7A 2ZVCA 2PCMA 2HUQA 2DXVA 1WNGA 2ED5A 1CBFA 2EGBA 1VA0A 2HUVA 2EL1A 2PB5A 2DV4A 2PCHA 2EH5A 2EK7A 2P5CA 3FFYA 2DSIA 2EN5A 3I4TA 3ND1A 2HR8A 2EMRA 3NDCA 3NUTA 2E7RA 2PCIA 2E0NA 2ELEA 1PJTA 3KWPA 2EHLA 2EJKA 2EGSA 2DXWA 2EL2A 2PCAA 2E0KA 2E4NA 2OWGA 2DSHA 2E07A 2OWVA 2EH2A 1VE2A 2E17A 2EGLA 2OWUA 2OWFA 2P6IA 3NEIA 3FQ6A 2P6DA 2BB3A 1PJSA 2YBQA 2E8QA 2DXXA 2P2XA 1PJQA 2OWKA 2EL3A 2PB4A 2EHCA 2EEQA 2ELDA 2E15A 2EMUA 2QBUA 2E4RA 2EL0A 2E8SA 4E16A 1WYZA 2DSGA 2PB6A 2ZVBA 2PCKA 5HW4A 2P6KA 2E8RA 1VCEA 2E16A 2HUXA 2YBOA 2E8HA 2DV3A 2P6LA 2EJJA 2Z6RA
chains in the Genus database with same CATH superfamily
2P9DA 1WDEA 3T0FA 3KE9A 2ED3A 2EK3A 2DEKA 2CBFA 2EK4A 2EH4A 2DV5A 2HUTA 2EK2A 2PCGA 2ENIA 1V9AA 3F7TA 1VHVA 3HH1A 2EKAA 2NPNA 2EJZA 2E08A 1S4DA 2P5FA 2DV7A 2ZVCA 2PCMA 2HUQA 2DXVA 1WNGA 2ED5A 1CBFA 3SZOA 2EGBA 1VA0A 2HUVA 2EL1A 2PB5A 2KYYA 3KEMA 2DV4A 2PCHA 2EH5A 2EK7A 3KEFA 2P5CA 3FFYA 2DSIA 2EN5A 3I4TA 3ND1A 2HR8A 4MV5A 2EMRA 3NDCA 3NUTA 2E7RA 2PCIA 2E0NA 2ELEA 1PJTA 3KWPA 2EHLA 3UWMA 2EJKA 2EGSA 2DXWA 4H4EA 2EL2A 3UV6A 3T0GA 2PCAA 2E0KA 4H4DA 2E4NA 2OWGA 2DSHA 3ZGNA 2E07A 2OWVA 2EH2A 1VE2A 4MUXA 2E17A 2EGLA 2OWUA 4N7BA 2OWFA 2P6IA 3NEIA 3FQ6A 2P6DA 3KE8A 2BB3A 1PJSA 2YBQA 2E8QA 3SZUA 4H4CA 3URKA 3LMMA 2DXXA 2P2XA 1PJQA 3ZGLA 2OWKA 4MV0A 2EL3A 2PB4A 2EHCA 3DNFA 2EEQA 3KELA 2ELDA 2E15A 3UTDA 3UV3A 2EMUA 3SZLA 3TIXB 2QBUA 2E4RA 2EL0A 2E8SA 4E16A 1WYZA 2DSGA 4EB3A 2PB6A 2ZVBA 2PCKA 5HW4A 2P6KA 4MUYA 2E8RA 1VCEA 2E16A 2HUXA 2YBOA 3UTCA 2E8HA 3UV7A 2DV3A 2P6LA 2EJJA 2Z6RA
chains in the Genus database with same CATH topology
2P9DA 1WDEA 3T0FA 3KE9A 2ED3A 2EK3A 2DEKA 2CBFA 2EK4A 2EH4A 2DV5A 2HUTA 2EK2A 2PCGA 2ENIA 1V9AA 3F7TA 1VHVA 3HH1A 2EKAA 2NPNA 2EJZA 2E08A 1S4DA 2P5FA 2DV7A 2ZVCA 2PCMA 2HUQA 2DXVA 1WNGA 2ED5A 1CBFA 3SZOA 2EGBA 1VA0A 2HUVA 2EL1A 2PB5A 2KYYA 3KEMA 2DV4A 2PCHA 2EH5A 2EK7A 3KEFA 2P5CA 3FFYA 2DSIA 2EN5A 3I4TA 3ND1A 2HR8A 4MV5A 2EMRA 3NDCA 3NUTA 2E7RA 2PCIA 2E0NA 2ELEA 1PJTA 3KWPA 2EHLA 3UWMA 2EJKA 2EGSA 2DXWA 4H4EA 2EL2A 3UV6A 3T0GA 2PCAA 2E0KA 4H4DA 2E4NA 2OWGA 2DSHA 3ZGNA 2E07A 2OWVA 2EH2A 1VE2A 4MUXA 2E17A 2EGLA 2OWUA 4N7BA 2OWFA 2P6IA 3NEIA 3FQ6A 2P6DA 3KE8A 2BB3A 1PJSA 2YBQA 2E8QA 3SZUA 4H4CA 3URKA 3LMMA 2DXXA 2P2XA 1PJQA 3ZGLA 2OWKA 4MV0A 2EL3A 2PB4A 2EHCA 3DNFA 2EEQA 3KELA 2ELDA 2E15A 3UTDA 3UV3A 2EMUA 3SZLA 3TIXB 2QBUA 2E4RA 2EL0A 2E8SA 4E16A 1WYZA 2DSGA 4EB3A 2PB6A 2ZVBA 2PCKA 5HW4A 2P6KA 4MUYA 2E8RA 1VCEA 2E16A 2HUXA 2YBOA 3UTCA 2E8HA 3UV7A 2DV3A 2P6LA 2EJJA 2Z6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P9D A;  1WDE A;  2ED3 A;  2EK3 A;  2DEK A;  2CBF A;  2EK4 A;  2EH4 A;  2DV5 A;  2HUT A;  2EK2 A;  2PCG A;  2ENI A;  1V9A A;  1VHV A;  3HH1 A;  2EKA A;  2NPN A;  2EJZ A;  2E08 A;  1S4D A;  2P5F A;  2DV7 A;  2ZVC A;  2PCM A;  2HUQ A;  2DXV A;  1WNG A;  2ED5 A;  1CBF A;  2EGB A;  1VA0 A;  2HUV A;  2EL1 A;  2PB5 A;  2DV4 A;  2PCH A;  2EH5 A;  2EK7 A;  2P5C A;  3FFY A;  2DSI A;  2EN5 A;  3I4T A;  3ND1 A;  2HR8 A;  2EMR A;  3NDC A;  3NUT A;  2E7R A;  2PCI A;  2E0N A;  2ELE A;  1PJT A;  3KWP A;  2EHL A;  2EJK A;  2EGS A;  2DXW A;  2EL2 A;  2PCA A;  2E0K A;  2E4N A;  2OWG A;  2DSH A;  2E07 A;  2OWV A;  2EH2 A;  1VE2 A;  2E17 A;  2EGL A;  2OWU A;  2OWF A;  2P6I A;  3NEI A;  3FQ6 A;  2P6D A;  2BB3 A;  1PJS A;  2YBQ A;  2E8Q A;  2DXX A;  2P2X A;  1PJQ A;  2OWK A;  2EL3 A;  2PB4 A;  2EHC A;  2EEQ A;  2ELD A;  2E15 A;  2EMU A;  2QBU A;  2E4R A;  2EL0 A;  2E8S A;  4E16 A;  1WYZ A;  2DSG A;  2PB6 A;  2ZVB A;  2PCK A;  5HW4 A;  2P6K A;  2E8R A;  1VCE A;  2E16 A;  2HUX A;  2YBO A;  2E8H A;  2DV3 A;  2P6L A;  2EJJ A;  2Z6R A; 
#chains in the Genus database with same CATH topology
 2P9D A;  1WDE A;  3T0F A;  3KE9 A;  2ED3 A;  2EK3 A;  2DEK A;  2CBF A;  2EK4 A;  2EH4 A;  2DV5 A;  2HUT A;  2EK2 A;  2PCG A;  2ENI A;  1V9A A;  3F7T A;  1VHV A;  3HH1 A;  2EKA A;  2NPN A;  2EJZ A;  2E08 A;  1S4D A;  2P5F A;  2DV7 A;  2ZVC A;  2PCM A;  2HUQ A;  2DXV A;  1WNG A;  2ED5 A;  1CBF A;  3SZO A;  2EGB A;  1VA0 A;  2HUV A;  2EL1 A;  2PB5 A;  2KYY A;  3KEM A;  2DV4 A;  2PCH A;  2EH5 A;  2EK7 A;  3KEF A;  2P5C A;  3FFY A;  2DSI A;  2EN5 A;  3I4T A;  3ND1 A;  2HR8 A;  4MV5 A;  2EMR A;  3NDC A;  3NUT A;  2E7R A;  2PCI A;  2E0N A;  2ELE A;  1PJT A;  3KWP A;  2EHL A;  3UWM A;  2EJK A;  2EGS A;  2DXW A;  4H4E A;  2EL2 A;  3UV6 A;  3T0G A;  2PCA A;  2E0K A;  4H4D A;  2E4N A;  2OWG A;  2DSH A;  3ZGN A;  2E07 A;  2OWV A;  2EH2 A;  1VE2 A;  4MUX A;  2E17 A;  2EGL A;  2OWU A;  4N7B A;  2OWF A;  2P6I A;  3NEI A;  3FQ6 A;  2P6D A;  3KE8 A;  2BB3 A;  1PJS A;  2YBQ A;  2E8Q A;  3SZU A;  4H4C A;  3URK A;  3LMM A;  2DXX A;  2P2X A;  1PJQ A;  3ZGL A;  2OWK A;  4MV0 A;  2EL3 A;  2PB4 A;  2EHC A;  3DNF A;  2EEQ A;  3KEL A;  2ELD A;  2E15 A;  3UTD A;  3UV3 A;  2EMU A;  3SZL A;  3TIX B;  2QBU A;  2E4R A;  2EL0 A;  2E8S A;  4E16 A;  1WYZ A;  2DSG A;  4EB3 A;  2PB6 A;  2ZVB A;  2PCK A;  5HW4 A;  2P6K A;  4MUY A;  2E8R A;  1VCE A;  2E16 A;  2HUX A;  2YBO A;  3UTC A;  2E8H A;  3UV7 A;  2DV3 A;  2P6L A;  2EJJ A;  2Z6R A; 
#chains in the Genus database with same CATH homology
 2P9D A;  1WDE A;  3T0F A;  3KE9 A;  2ED3 A;  2EK3 A;  2DEK A;  2CBF A;  2EK4 A;  2EH4 A;  2DV5 A;  2HUT A;  2EK2 A;  2PCG A;  2ENI A;  1V9A A;  3F7T A;  1VHV A;  3HH1 A;  2EKA A;  2NPN A;  2EJZ A;  2E08 A;  1S4D A;  2P5F A;  2DV7 A;  2ZVC A;  2PCM A;  2HUQ A;  2DXV A;  1WNG A;  2ED5 A;  1CBF A;  3SZO A;  2EGB A;  1VA0 A;  2HUV A;  2EL1 A;  2PB5 A;  2KYY A;  3KEM A;  2DV4 A;  2PCH A;  2EH5 A;  2EK7 A;  3KEF A;  2P5C A;  3FFY A;  2DSI A;  2EN5 A;  3I4T A;  3ND1 A;  2HR8 A;  4MV5 A;  2EMR A;  3NDC A;  3NUT A;  2E7R A;  2PCI A;  2E0N A;  2ELE A;  1PJT A;  3KWP A;  2EHL A;  3UWM A;  2EJK A;  2EGS A;  2DXW A;  4H4E A;  2EL2 A;  3UV6 A;  3T0G A;  2PCA A;  2E0K A;  4H4D A;  2E4N A;  2OWG A;  2DSH A;  3ZGN A;  2E07 A;  2OWV A;  2EH2 A;  1VE2 A;  4MUX A;  2E17 A;  2EGL A;  2OWU A;  4N7B A;  2OWF A;  2P6I A;  3NEI A;  3FQ6 A;  2P6D A;  3KE8 A;  2BB3 A;  1PJS A;  2YBQ A;  2E8Q A;  3SZU A;  4H4C A;  3URK A;  3LMM A;  2DXX A;  2P2X A;  1PJQ A;  3ZGL A;  2OWK A;  4MV0 A;  2EL3 A;  2PB4 A;  2EHC A;  3DNF A;  2EEQ A;  3KEL A;  2ELD A;  2E15 A;  3UTD A;  3UV3 A;  2EMU A;  3SZL A;  3TIX B;  2QBU A;  2E4R A;  2EL0 A;  2E8S A;  4E16 A;  1WYZ A;  2DSG A;  4EB3 A;  2PB6 A;  2ZVB A;  2PCK A;  5HW4 A;  2P6K A;  4MUY A;  2E8R A;  1VCE A;  2E16 A;  2HUX A;  2YBO A;  3UTC A;  2E8H A;  3UV7 A;  2DV3 A;  2P6L A;  2EJJ A;  2Z6R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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