2DFXE

Crystal structure of the carboxy terminal domain of colicin e5 complexed with its inhibitor
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
92
structure length
92
Chain Sequence
LKIDQKIRGQMPERGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSPGKYVVVNDRTGEVTQISDKTDPGWVDDSRIQWG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Colicin-E5
publication title Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
pubmed doi rcsb
source organism Escherichia coli
total genus 23
structure length 92
sequence length 92
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF12106 Colicin_E5 Colicin E5 ribonuclease domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.30 Alpha Beta 2-Layer Sandwich YaeB-like fold YaeB-like fold 2dfxE00
2DFXE 3VJ7A 2A8KA 2DJHA 3AO9A 2FHZB
chains in the Genus database with same CATH superfamily
4LTTA 4ML0B 4MCXB 4FBDA 2PD0A 4MCTB 5CZFC 5IWHA 4FXHA 4LS4A 4NRNA 3VJ7A 3G5OB 4LSYA 4FXED 2KC9A 2OTRA 2KC8A 5CEGB 5IXLA 3OEIC 2A6QE 4MMJA 3BPQB 2KHEA 2A8KA 1XQBA 2DJHA 1Z8MA 3AO9A 4FXIA 2DFXE 4MMGA 3HI2B 5CW7B 2A6SA 5CZEB 2A6RA 4YY3Y 4ML2A 4Q2UB 1WMIA 3KXEA 4PX8A 2FHZB
chains in the Genus database with same CATH topology
2DFXE 3HI2B 3VJ7A 2A8KA 4FBDA 2DJHA 3AO9A 2PD0A 2FHZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DFX E;  3VJ7 A;  2A8K A;  2DJH A;  3AO9 A;  2FHZ B; 
#chains in the Genus database with same CATH topology
 4LTT A;  4ML0 B;  4MCX B;  4FBD A;  2PD0 A;  4MCT B;  5CZF C;  5IWH A;  4FXH A;  4LS4 A;  4NRN A;  3VJ7 A;  3G5O B;  4LSY A;  4FXE D;  2KC9 A;  2OTR A;  2KC8 A;  5CEG B;  5IXL A;  3OEI C;  2A6Q E;  4MMJ A;  3BPQ B;  2KHE A;  2A8K A;  1XQB A;  2DJH A;  1Z8M A;  3AO9 A;  4FXI A;  2DFX E;  4MMG A;  3HI2 B;  5CW7 B;  2A6S A;  5CZE B;  2A6R A;  4YY3 Y;  4ML2 A;  4Q2U B;  1WMI A;  3KXE A;  4PX8 A;  2FHZ B; 
#chains in the Genus database with same CATH homology
 2DFX E;  3HI2 B;  3VJ7 A;  2A8K A;  4FBD A;  2DJH A;  3AO9 A;  2PD0 A;  2FHZ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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