2DFXI

Crystal structure of the carboxy terminal domain of colicin e5 complexed with its inhibitor
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
106
structure length
106
Chain Sequence
KLFEHTVLYDSGDAFFELKGNASMKLSPKAAIEVCNEAAKKGLWILGIDGGHWLNPGFRIDSSASWTYDMPEEYKSKIPENNRLAIENIKDDIENGYTAFIITLKM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
pubmed doi rcsb
molecule tags Hydrolase
source organism Escherichia coli
molecule keywords Colicin-E5
total genus 30
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2006-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF11480 ImmE5 Colicin-E5 Imm protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.30 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase 2dfxI00
2DFXI 2FHZA
chains in the Genus database with same CATH superfamily
4F0HB 1IWAB 4F0KB 2V69I 1EJ7S 2VDHI 4F9TA 1AA1C 1AD2A 1IR1S 1UWAC 2V67I 4QGBA 3ZXWB 5DM70 1SVDM 1U63A 1RLCS 4LQ4A 4MKVS 1UZDC 3ZQJA 1CJSA 1RBLI 1UPPI 1BWVS 1AUSS 1RCOC 3QOYA 3UMYA 1WDDS 1UPMC 1UW9C 2YBVB 3AXKS 4DFCB 1ZHOA 1RLDS 2VDII 1RXOC 2V68I 3RUBS 1RSCI 1MZPA 1GK8I 3FPNA 8RUCI 1I2AA 2V63I 2V6AI 5DM60 4QVIA 3U56A 1BXNI 4QG3A 3U4MA 4HHHS 2HW8A 1UZHC 2FHZA 4RUBS 4F0MB 1RCXC 3AXMS 1IR21 1RBOC 2DFXI 4REOA 3TG8A 1DWUA
chains in the Genus database with same CATH topology
4F9TA 4QGBA 1AD2A 1U63A 5DM70 4LQ4A 3ZQJA 1CJSA 3QOYA 3UMYA 4DFCB 1ZHOA 1MZPA 3FPNA 1I2AA 3U56A 5DM60 4QVIA 4QG3A 3U4MA 2HW8A 2FHZA 2DFXI 4REOA 3TG8A 1DWUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DFX I;  2FHZ A; 
#chains in the Genus database with same CATH topology
 4F0H B;  1IWA B;  4F0K B;  2V69 I;  1EJ7 S;  2VDH I;  4F9T A;  1AA1 C;  1AD2 A;  1IR1 S;  1UWA C;  2V67 I;  4QGB A;  3ZXW B;  5DM7 0;  1SVD M;  1U63 A;  1RLC S;  4LQ4 A;  4MKV S;  1UZD C;  3ZQJ A;  1CJS A;  1RBL I;  1UPP I;  1BWV S;  1AUS S;  1RCO C;  3QOY A;  3UMY A;  1WDD S;  1UPM C;  1UW9 C;  2YBV B;  3AXK S;  4DFC B;  1ZHO A;  1RLD S;  2VDI I;  1RXO C;  2V68 I;  3RUB S;  1RSC I;  1MZP A;  1GK8 I;  3FPN A;  8RUC I;  1I2A A;  2V63 I;  2V6A I;  5DM6 0;  4QVI A;  3U56 A;  1BXN I;  4QG3 A;  3U4M A;  4HHH S;  2HW8 A;  1UZH C;  2FHZ A;  4RUB S;  4F0M B;  1RCX C;  3AXM S;  1IR2 1;  1RBO C;  2DFX I;  4REO A;  3TG8 A;  1DWU A; 
#chains in the Genus database with same CATH homology
 4F9T A;  4QGB A;  1AD2 A;  1U63 A;  5DM7 0;  4LQ4 A;  3ZQJ A;  1CJS A;  3QOY A;  3UMY A;  4DFC B;  1ZHO A;  1MZP A;  3FPN A;  1I2A A;  3U56 A;  5DM6 0;  4QVI A;  4QG3 A;  3U4M A;  2HW8 A;  2FHZ A;  2DFX I;  4REO A;  3TG8 A;  1DWU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...