2DFXI

Crystal structure of the carboxy terminal domain of colicin e5 complexed with its inhibitor
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
106
structure length
106
Chain Sequence
KLFEHTVLYDSGDAFFELKGNASMKLSPKAAIEVCNEAAKKGLWILGIDGGHWLNPGFRIDSSASWTYDMPEEYKSKIPENNRLAIENIKDDIENGYTAFIITLKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Colicin-E5
publication title Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
pubmed doi rcsb
source organism Escherichia coli
total genus 30
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2006-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF11480 ImmE5 Colicin-E5 Imm protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.30 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase 2dfxI00
2FHZA 2DFXI
chains in the Genus database with same CATH superfamily
1RBLI 1UWAC 4F9TA 1RCXC 3AXKS 1RLCS 3AXMS 4F0MB 3U4MA 2V6AI 4F0HB 2V63I 1UPMC 3TG8A 2VDHI 1SVDM 4MKVS 2V67I 2YBVB 1RSCI 2VDII 1UW9C 3UMYA 1WDDS 1AD2A 1AA1C 5DM70 4QVIA 5DM60 1UZDC 2DFXI 2V68I 1U63A 1RBOC 1UZHC 1DWUA 2FHZA 4QGBA 4LQ4A 1RXOC 4QG3A 3QOYA 1IR1S 2V69I 2HW8A 3U56A 1CJSA 1RCOC 1MZPA 3ZXWB 1IR21 3ZQJA 1AUSS 1EJ7S 4RUBS 4F0KB 1BWVS 1UPPI 1IWAB 4REOA 1I2AA 1BXNI 4HHHS 1RLDS 1ZHOA 1GK8I 3RUBS 8RUCI 4DFCB 3FPNA
chains in the Genus database with same CATH topology
4F9TA 3U4MA 3TG8A 3UMYA 1AD2A 5DM70 4QVIA 5DM60 2DFXI 1U63A 1DWUA 2FHZA 4QGBA 4LQ4A 4QG3A 3QOYA 2HW8A 3U56A 1CJSA 1MZPA 3ZQJA 4REOA 1I2AA 1ZHOA 4DFCB 3FPNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FHZ A;  2DFX I; 
#chains in the Genus database with same CATH topology
 1RBL I;  1UWA C;  4F9T A;  1RCX C;  3AXK S;  1RLC S;  3AXM S;  4F0M B;  3U4M A;  2V6A I;  4F0H B;  2V63 I;  1UPM C;  3TG8 A;  2VDH I;  1SVD M;  4MKV S;  2V67 I;  2YBV B;  1RSC I;  2VDI I;  1UW9 C;  3UMY A;  1WDD S;  1AD2 A;  1AA1 C;  5DM7 0;  4QVI A;  5DM6 0;  1UZD C;  2DFX I;  2V68 I;  1U63 A;  1RBO C;  1UZH C;  1DWU A;  2FHZ A;  4QGB A;  4LQ4 A;  1RXO C;  4QG3 A;  3QOY A;  1IR1 S;  2V69 I;  2HW8 A;  3U56 A;  1CJS A;  1RCO C;  1MZP A;  3ZXW B;  1IR2 1;  3ZQJ A;  1AUS S;  1EJ7 S;  4RUB S;  4F0K B;  1BWV S;  1UPP I;  1IWA B;  4REO A;  1I2A A;  1BXN I;  4HHH S;  1RLD S;  1ZHO A;  1GK8 I;  3RUB S;  8RUC I;  4DFC B;  3FPN A; 
#chains in the Genus database with same CATH homology
 4F9T A;  3U4M A;  3TG8 A;  3UMY A;  1AD2 A;  5DM7 0;  4QVI A;  5DM6 0;  2DFX I;  1U63 A;  1DWU A;  2FHZ A;  4QGB A;  4LQ4 A;  4QG3 A;  3QOY A;  2HW8 A;  3U56 A;  1CJS A;  1MZP A;  3ZQJ A;  4REO A;  1I2A A;  1ZHO A;  4DFC B;  3FPN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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