2DK1A

Solution structure of ww domain in ww domain binding protein 4 (wbp-4)
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
50
structure length
50
Chain Sequence
GSSGSSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation
molecule keywords WW domain-binding protein 4
publication title Solution structure of WW domain in WW domain binding protein 4 (WBP-4)
rcsb
source organism Homo sapiens
total genus 2
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2006-04-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2dk1A00
2ZR5A 3KADA 2XP3A 3WH0A 1K9RA 2LAJA 1NMVA 2YSFA 2ZAJA 2M8JA 1PINA 1YW5A 2YSHA 2DJYA 2ZQTA 3KAFA 5CQ2A 4REXA 1TK7A 2XP4A 2DK7A 4E5RA 2JX8A 1EG4A 2DK1A 2ZQVA 2ZQSA 1K9QA 3NTPA 2ITKA 1WMVA 3TDBA 4U85A 2JMFA 3OOBA 2BA1A 2F21A 4QIBA 2EZ5W 4U86A 2M3OW 3KAGA 1O6WA 2E45A 1JMQA 2DMVA 1ZCNA 1F8AB 1I5HW 3TCZA 2M8IA 2L4JA 2XP8A 2XP9A 3ODKA 2JXWA 2ZR4A 3CNGA 2XP7A 2ZR6A 3M7NA 3KABA 2YSBA 2MDIA 2RE3A 3L4HA 2JV4A 3TC5A 3KAIA 2YSIA 3KAHA 5AHTA 2ZQUA 2DWVA 1WR7A 2Q5AA 3LE4A 2KXQA 2XPAA 3M85A 3KCEA 2XPBA 1EG3A 2YSGA 2XP6A 2XP5A 4U84A
chains in the Genus database with same CATH superfamily
2ZR5A 3KADA 2XP3A 5U47A 3WH0A 1K9RA 2LAJA 3PQHA 1NMVA 2YSFA 2ZAJA 3MCBA 1RP5A 2M8JA 1PINA 1YW5A 2YSHA 2DJYA 2ZQTA 3KAFA 5CQ2A 4REXA 1TK7A 2XP4A 2DK7A 4E5RA 2JX8A 1EG4A 2DK1A 2ZQVA 2ZQSA 1K9QA 3MCBB 3NTPA 2OWOA 2ITKA 1WMVA 3TDBA 4U85A 2JMFA 3OOBA 2BA1A 2F21A 4QIBA 2EZ5W 4U86A 1FLCA 2Y8NB 2M3OW 3KAGA 1O6WA 2E45A 1JMQA 2DMVA 1ZCNA 1F8AB 1I5HW 3TCZA 2M8IA 2L4JA 2XP8A 1TR8A 4A0TA 4GLXA 2QRVA 2XP9A 5E62A 3ODKA 2JXWA 2ZR4A 2WADA 5E65A 3CNGA 5E64A 3FS8A 2XP7A 2ZR6A 3M7NA 3KABA 2YSBA 3LKXA 2MDIA 3MQHA 2RE3A 3L4HA 4A0UA 2JV4A 3TC5A 3KAIA 2YSIA 3KAHA 3FSCA 5AHTA 2ZQUA 2DWVA 5E5WA 1WR7A 2Q5AA 3LE4A 3LKXB 2KXQA 2XPAA 3M85A 5E66A 3KCEA 3FSBA 2XPBA 1EG3A 2YAJB 2YSGA 3MQGA 2XP6A 2XP5A 4U84A 2WAEA
chains in the Genus database with same CATH topology
2ZR5A 3KADA 2XP3A 5U47A 3WH0A 1K9RA 2LAJA 3PQHA 1NMVA 2YSFA 2ZAJA 3MCBA 1RP5A 2M8JA 1PINA 1YW5A 2YSHA 2DJYA 2ZQTA 3KAFA 5CQ2A 4REXA 1TK7A 2XP4A 2DK7A 4E5RA 2JX8A 1EG4A 2DK1A 2ZQVA 2ZQSA 1K9QA 3MCBB 3NTPA 2OWOA 2ITKA 1WMVA 3TDBA 4U85A 2JMFA 3OOBA 2BA1A 2F21A 4QIBA 2EZ5W 4U86A 1FLCA 2Y8NB 2M3OW 3KAGA 1O6WA 2E45A 1JMQA 2DMVA 1ZCNA 1F8AB 1I5HW 3TCZA 2M8IA 2L4JA 2XP8A 1TR8A 4A0TA 4GLXA 2QRVA 2XP9A 5E62A 3ODKA 2JXWA 2ZR4A 2WADA 5E65A 3CNGA 5E64A 3FS8A 2XP7A 2ZR6A 3M7NA 3KABA 2YSBA 3LKXA 2MDIA 3MQHA 2RE3A 3L4HA 4A0UA 2JV4A 3TC5A 3KAIA 2YSIA 3KAHA 3FSCA 5AHTA 2ZQUA 2DWVA 5E5WA 1WR7A 2Q5AA 3LE4A 3LKXB 2KXQA 2XPAA 3M85A 5E66A 3KCEA 3FSBA 2XPBA 1EG3A 2YAJB 2YSGA 3MQGA 2XP6A 2XP5A 4U84A 2WAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZR5 A;  3KAD A;  2XP3 A;  3WH0 A;  1K9R A;  2LAJ A;  1NMV A;  2YSF A;  2ZAJ A;  2M8J A;  1PIN A;  1YW5 A;  2YSH A;  2DJY A;  2ZQT A;  3KAF A;  5CQ2 A;  4REX A;  1TK7 A;  2XP4 A;  2DK7 A;  4E5R A;  2JX8 A;  1EG4 A;  2DK1 A;  2ZQV A;  2ZQS A;  1K9Q A;  3NTP A;  2ITK A;  1WMV A;  3TDB A;  4U85 A;  2JMF A;  3OOB A;  2BA1 A;  2F21 A;  4QIB A;  2EZ5 W;  4U86 A;  2M3O W;  3KAG A;  1O6W A;  2E45 A;  1JMQ A;  2DMV A;  1ZCN A;  1F8A B;  1I5H W;  3TCZ A;  2M8I A;  2L4J A;  2XP8 A;  2XP9 A;  3ODK A;  2JXW A;  2ZR4 A;  3CNG A;  2XP7 A;  2ZR6 A;  3M7N A;  3KAB A;  2YSB A;  2MDI A;  2RE3 A;  3L4H A;  2JV4 A;  3TC5 A;  3KAI A;  2YSI A;  3KAH A;  5AHT A;  2ZQU A;  2DWV A;  1WR7 A;  2Q5A A;  3LE4 A;  2KXQ A;  2XPA A;  3M85 A;  3KCE A;  2XPB A;  1EG3 A;  2YSG A;  2XP6 A;  2XP5 A;  4U84 A; 
#chains in the Genus database with same CATH topology
 2ZR5 A;  3KAD A;  2XP3 A;  5U47 A;  3WH0 A;  1K9R A;  2LAJ A;  3PQH A;  1NMV A;  2YSF A;  2ZAJ A;  3MCB A;  1RP5 A;  2M8J A;  1PIN A;  1YW5 A;  2YSH A;  2DJY A;  2ZQT A;  3KAF A;  5CQ2 A;  4REX A;  1TK7 A;  2XP4 A;  2DK7 A;  4E5R A;  2JX8 A;  1EG4 A;  2DK1 A;  2ZQV A;  2ZQS A;  1K9Q A;  3MCB B;  3NTP A;  2OWO A;  2ITK A;  1WMV A;  3TDB A;  4U85 A;  2JMF A;  3OOB A;  2BA1 A;  2F21 A;  4QIB A;  2EZ5 W;  4U86 A;  1FLC A;  2Y8N B;  2M3O W;  3KAG A;  1O6W A;  2E45 A;  1JMQ A;  2DMV A;  1ZCN A;  1F8A B;  1I5H W;  3TCZ A;  2M8I A;  2L4J A;  2XP8 A;  1TR8 A;  4A0T A;  4GLX A;  2QRV A;  2XP9 A;  5E62 A;  3ODK A;  2JXW A;  2ZR4 A;  2WAD A;  5E65 A;  3CNG A;  5E64 A;  3FS8 A;  2XP7 A;  2ZR6 A;  3M7N A;  3KAB A;  2YSB A;  3LKX A;  2MDI A;  3MQH A;  2RE3 A;  3L4H A;  4A0U A;  2JV4 A;  3TC5 A;  3KAI A;  2YSI A;  3KAH A;  3FSC A;  5AHT A;  2ZQU A;  2DWV A;  5E5W A;  1WR7 A;  2Q5A A;  3LE4 A;  3LKX B;  2KXQ A;  2XPA A;  3M85 A;  5E66 A;  3KCE A;  3FSB A;  2XPB A;  1EG3 A;  2YAJ B;  2YSG A;  3MQG A;  2XP6 A;  2XP5 A;  4U84 A;  2WAE A; 
#chains in the Genus database with same CATH homology
 2ZR5 A;  3KAD A;  2XP3 A;  5U47 A;  3WH0 A;  1K9R A;  2LAJ A;  3PQH A;  1NMV A;  2YSF A;  2ZAJ A;  3MCB A;  1RP5 A;  2M8J A;  1PIN A;  1YW5 A;  2YSH A;  2DJY A;  2ZQT A;  3KAF A;  5CQ2 A;  4REX A;  1TK7 A;  2XP4 A;  2DK7 A;  4E5R A;  2JX8 A;  1EG4 A;  2DK1 A;  2ZQV A;  2ZQS A;  1K9Q A;  3MCB B;  3NTP A;  2OWO A;  2ITK A;  1WMV A;  3TDB A;  4U85 A;  2JMF A;  3OOB A;  2BA1 A;  2F21 A;  4QIB A;  2EZ5 W;  4U86 A;  1FLC A;  2Y8N B;  2M3O W;  3KAG A;  1O6W A;  2E45 A;  1JMQ A;  2DMV A;  1ZCN A;  1F8A B;  1I5H W;  3TCZ A;  2M8I A;  2L4J A;  2XP8 A;  1TR8 A;  4A0T A;  4GLX A;  2QRV A;  2XP9 A;  5E62 A;  3ODK A;  2JXW A;  2ZR4 A;  2WAD A;  5E65 A;  3CNG A;  5E64 A;  3FS8 A;  2XP7 A;  2ZR6 A;  3M7N A;  3KAB A;  2YSB A;  3LKX A;  2MDI A;  3MQH A;  2RE3 A;  3L4H A;  4A0U A;  2JV4 A;  3TC5 A;  3KAI A;  2YSI A;  3KAH A;  3FSC A;  5AHT A;  2ZQU A;  2DWV A;  5E5W A;  1WR7 A;  2Q5A A;  3LE4 A;  3LKX B;  2KXQ A;  2XPA A;  3M85 A;  5E66 A;  3KCE A;  3FSB A;  2XPB A;  1EG3 A;  2YAJ B;  2YSG A;  3MQG A;  2XP6 A;  2XP5 A;  4U84 A;  2WAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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