2DK4A

Solution structure of splicing factor motif in pre-mrna splicing factor 18 (hprp18)
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
76
structure length
76
Chain Sequence
GSSGSSGTSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation
molecule keywords Pre-mRNA-splicing factor 18
publication title Solution structure of the splicing factor motif (SFM) of the human Prp18 protein
doi rcsb
source organism Homo sapiens
total genus 10
structure length 76
sequence length 76
ec nomenclature
pdb deposition date 2006-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08799 PRP4 pre-mRNA processing factor 4 (PRP4) like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.150 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 2dk4A00
2DK4A
chains in the Genus database with same CATH superfamily
1ZBHA 2KVUA 2HJQA 2DK4A 2ODCI 1YNSA 1E7LA 1GL9B 1KHCA 4UZWA 1JEQA 1GJJA 2KVDA 2QNFA 1E7DA 2LC3A 2KVEA 2RNNA 1A63A 1A8VA 1H9EA 2W51A 3FLGA 2RNOA 1H9FA 1JEIA 2KFVA 2G80A 1V66A 1H1JS 1Y02A 1GKUB 2WQGA 3QKJA 2ODGC 1EN7A 2MPHA 3L0OA 2QNCA 5CIUA 1A62A 1JJRA 2LD7A 1ZS9A 2KW9A 2A8VA 2JVWA 4BITA 3LLRA
chains in the Genus database with same CATH topology
2HJQA 2DK4A 2ODCI 1YNSA 1E7LA 1GL9B 1GJJA 2QNFA 1E7DA 2LC3A 1A63A 1A8VA 1H9EA 2W51A 1H9FA 1JEIA 2KFVA 2G80A 1Y02A 1GKUB 2ODGC 1EN7A 2MPHA 3L0OA 2QNCA 1A62A 2LD7A 1ZS9A 2A8VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DK4 A; 
#chains in the Genus database with same CATH topology
 1ZBH A;  2KVU A;  2HJQ A;  2DK4 A;  2ODC I;  1YNS A;  1E7L A;  1GL9 B;  1KHC A;  4UZW A;  1JEQ A;  1GJJ A;  2KVD A;  2QNF A;  1E7D A;  2LC3 A;  2KVE A;  2RNN A;  1A63 A;  1A8V A;  1H9E A;  2W51 A;  3FLG A;  2RNO A;  1H9F A;  1JEI A;  2KFV A;  2G80 A;  1V66 A;  1H1J S;  1Y02 A;  1GKU B;  2WQG A;  3QKJ A;  2ODG C;  1EN7 A;  2MPH A;  3L0O A;  2QNC A;  5CIU A;  1A62 A;  1JJR A;  2LD7 A;  1ZS9 A;  2KW9 A;  2A8V A;  2JVW A;  4BIT A;  3LLR A; 
#chains in the Genus database with same CATH homology
 2HJQ A;  2DK4 A;  2ODC I;  1YNS A;  1E7L A;  1GL9 B;  1GJJ A;  2QNF A;  1E7D A;  2LC3 A;  1A63 A;  1A8V A;  1H9E A;  2W51 A;  1H9F A;  1JEI A;  2KFV A;  2G80 A;  1Y02 A;  1GKU B;  2ODG C;  1EN7 A;  2MPH A;  3L0O A;  2QNC A;  1A62 A;  2LD7 A;  1ZS9 A;  2A8V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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