2DO8A

Solution structure of upf0301 protein hd_1794
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
188
structure length
188
Chain Sequence
MFGNLQGKFIIATPEMDDEYFDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRIYTQDQMVLNGGPVNQDRGFIVHSKTDHEFTHSYKVTDDITLTTSGDVLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTLFETSYLDRWVEANEMLGISGILAPAGRALE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords UPF0301 protein HD_1794
publication title Solution Structure of UPF0301 protein HD_1794
rcsb
source organism Haemophilus ducreyi
total genus 32
structure length 188
sequence length 188
ec nomenclature
pdb deposition date 2006-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02622 DUF179 Uncharacterized ACR, COG1678
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1740.10 Alpha Beta 3-Layer(aba) Sandwich VC0467-like VC0467-like 2do8A01
2GZOA 2MUIA 2HRXA 2DO8A 2EW0A 2AJ2A 2GS5A 2HAFA
chains in the Genus database with same CATH superfamily
2GZOA 2MUIA 2HRXA 2DO8A 2EW0A 2AJ2A 2GS5A 2HAFA
chains in the Genus database with same CATH topology
2GZOA 2MUIA 2HRXA 2DO8A 2EW0A 2AJ2A 2GS5A 2HAFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZO A;  2MUI A;  2HRX A;  2DO8 A;  2EW0 A;  2AJ2 A;  2GS5 A;  2HAF A; 
#chains in the Genus database with same CATH topology
 2GZO A;  2MUI A;  2HRX A;  2DO8 A;  2EW0 A;  2AJ2 A;  2GS5 A;  2HAF A; 
#chains in the Genus database with same CATH homology
 2GZO A;  2MUI A;  2HRX A;  2DO8 A;  2EW0 A;  2AJ2 A;  2GS5 A;  2HAF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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