2DV7A

Crystal structure of lys187 to arg mutant of diphthine synthase
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLRVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2dv7A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2dv7A01
2DXVA 2EK3A 2HUVA 2E16A 2E07A 2PB5A 2EHCA 2YBOA 2P2XA 2E4RA 2EK4A 2EH4A 1WDEA 1PJSA 3I4TA 2ENIA 2P6DA 2OWGA 2EH2A 3FFYA 1WNGA 2HR8A 3KWPA 3ND1A 2DEKA 2EN5A 2DSHA 2DXWA 2PB4A 1V9AA 2EGLA 2CBFA 2P6KA 2ELEA 2PCGA 2EKAA 2P9DA 2EJJA 2NPNA 2E0NA 5HW4A 2ZVBA 2YBQA 2EL3A 1VE2A 2PB6A 1VHVA 2EMUA 2EGSA 2EK2A 2EH5A 3FQ6A 2E8HA 2OWUA 2PCIA 1S4DA 3HH1A 2E8QA 2DSGA 2PCMA 2E0KA 2OWFA 1CBFA 2DV4A 1PJQA 2OWVA 2DV7A 2E7RA 2HUTA 3NUTA 2EHLA 2PCKA 2EK7A 1VCEA 1WYZA 2DSIA 2EGBA 2BB3A 2DV5A 2EL2A 2PCAA 2P6LA 2EL1A 2PCHA 2E4NA 2P5FA 2OWKA 2DV3A 2HUQA 3NDCA 2E8RA 2QBUA 2ELDA 2EJZA 4E16A 2ZVCA 3NEIA 2E17A 1PJTA 2E8SA 2ED3A 2HUXA 2EL0A 2EEQA 2EJKA 2DXXA 2P6IA 1VA0A 2Z6RA 2ED5A 2E08A 2P5CA 2E15A 2EMRA
chains in the Genus database with same CATH superfamily
3KE8A 2DXVA 2EK3A 2HUVA 2E16A 3DNFA 4H4DA 2E07A 2PB5A 2EHCA 3UWMA 2YBOA 2P2XA 2E4RA 2EK4A 2EH4A 1WDEA 1PJSA 3I4TA 4MUYA 3SZOA 2ENIA 2P6DA 2OWGA 2EH2A 3FFYA 1WNGA 2HR8A 3KWPA 3ND1A 4EB3A 2DEKA 2EN5A 3T0GA 2DSHA 3UV3A 3UV7A 3KELA 2DXWA 2PB4A 1V9AA 2EGLA 2CBFA 2P6KA 3SZLA 2ELEA 4MV5A 3UV6A 2PCGA 2EKAA 2P9DA 2EJJA 2NPNA 2E0NA 3F7TA 5HW4A 2ZVBA 4MV0A 2YBQA 2EL3A 1VE2A 2PB6A 1VHVA 2EMUA 2EGSA 2KYYA 3SZUA 2EK2A 2EH5A 3FQ6A 2E8HA 2OWUA 3LMMA 4N7BA 2PCIA 1S4DA 3HH1A 2E8QA 2DSGA 2PCMA 2E0KA 2OWFA 1CBFA 3KE9A 2DV4A 1PJQA 2OWVA 3KEMA 2DV7A 2E7RA 2HUTA 3NUTA 2EHLA 2PCKA 2EK7A 3ZGNA 1VCEA 4MUXA 1WYZA 3URKA 2DSIA 2EGBA 3T0FA 2BB3A 2DV5A 2EL2A 2PCAA 2P6LA 2EL1A 2PCHA 2E4NA 2P5FA 3KEFA 2OWKA 2DV3A 2HUQA 3NDCA 2E8RA 2QBUA 2ELDA 4H4EA 2EJZA 4H4CA 4E16A 2ZVCA 3NEIA 2E17A 1PJTA 2E8SA 3TIXB 2ED3A 2HUXA 3UTDA 2EL0A 2EEQA 2EJKA 2DXXA 2P6IA 1VA0A 3ZGLA 2Z6RA 3UTCA 2ED5A 2E08A 2P5CA 2E15A 2EMRA
chains in the Genus database with same CATH topology
3KE8A 2DXVA 2EK3A 2HUVA 2E16A 3DNFA 4H4DA 2E07A 2PB5A 2EHCA 3UWMA 2YBOA 2P2XA 2E4RA 2EK4A 2EH4A 1WDEA 1PJSA 3I4TA 4MUYA 3SZOA 2ENIA 2P6DA 2OWGA 2EH2A 3FFYA 1WNGA 2HR8A 3KWPA 3ND1A 4EB3A 2DEKA 2EN5A 3T0GA 2DSHA 3UV3A 3UV7A 3KELA 2DXWA 2PB4A 1V9AA 2EGLA 2CBFA 2P6KA 3SZLA 2ELEA 4MV5A 3UV6A 2PCGA 2EKAA 2P9DA 2EJJA 2NPNA 2E0NA 3F7TA 5HW4A 2ZVBA 4MV0A 2YBQA 2EL3A 1VE2A 2PB6A 1VHVA 2EMUA 2EGSA 2KYYA 3SZUA 2EK2A 2EH5A 3FQ6A 2E8HA 2OWUA 3LMMA 4N7BA 2PCIA 1S4DA 3HH1A 2E8QA 2DSGA 2PCMA 2E0KA 2OWFA 1CBFA 3KE9A 2DV4A 1PJQA 2OWVA 3KEMA 2DV7A 2E7RA 2HUTA 3NUTA 2EHLA 2PCKA 2EK7A 3ZGNA 1VCEA 4MUXA 1WYZA 3URKA 2DSIA 2EGBA 3T0FA 2BB3A 2DV5A 2EL2A 2PCAA 2P6LA 2EL1A 2PCHA 2E4NA 2P5FA 3KEFA 2OWKA 2DV3A 2HUQA 3NDCA 2E8RA 2QBUA 2ELDA 4H4EA 2EJZA 4H4CA 4E16A 2ZVCA 3NEIA 2E17A 1PJTA 2E8SA 3TIXB 2ED3A 2HUXA 3UTDA 2EL0A 2EEQA 2EJKA 2DXXA 2P6IA 1VA0A 3ZGLA 2Z6RA 3UTCA 2ED5A 2E08A 2P5CA 2E15A 2EMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXV A;  2EK3 A;  2HUV A;  2E16 A;  2E07 A;  2PB5 A;  2EHC A;  2YBO A;  2P2X A;  2E4R A;  2EK4 A;  2EH4 A;  1WDE A;  1PJS A;  3I4T A;  2ENI A;  2P6D A;  2OWG A;  2EH2 A;  3FFY A;  1WNG A;  2HR8 A;  3KWP A;  3ND1 A;  2DEK A;  2EN5 A;  2DSH A;  2DXW A;  2PB4 A;  1V9A A;  2EGL A;  2CBF A;  2P6K A;  2ELE A;  2PCG A;  2EKA A;  2P9D A;  2EJJ A;  2NPN A;  2E0N A;  5HW4 A;  2ZVB A;  2YBQ A;  2EL3 A;  1VE2 A;  2PB6 A;  1VHV A;  2EMU A;  2EGS A;  2EK2 A;  2EH5 A;  3FQ6 A;  2E8H A;  2OWU A;  2PCI A;  1S4D A;  3HH1 A;  2E8Q A;  2DSG A;  2PCM A;  2E0K A;  2OWF A;  1CBF A;  2DV4 A;  1PJQ A;  2OWV A;  2DV7 A;  2E7R A;  2HUT A;  3NUT A;  2EHL A;  2PCK A;  2EK7 A;  1VCE A;  1WYZ A;  2DSI A;  2EGB A;  2BB3 A;  2DV5 A;  2EL2 A;  2PCA A;  2P6L A;  2EL1 A;  2PCH A;  2E4N A;  2P5F A;  2OWK A;  2DV3 A;  2HUQ A;  3NDC A;  2E8R A;  2QBU A;  2ELD A;  2EJZ A;  4E16 A;  2ZVC A;  3NEI A;  2E17 A;  1PJT A;  2E8S A;  2ED3 A;  2HUX A;  2EL0 A;  2EEQ A;  2EJK A;  2DXX A;  2P6I A;  1VA0 A;  2Z6R A;  2ED5 A;  2E08 A;  2P5C A;  2E15 A;  2EMR A; 
#chains in the Genus database with same CATH topology
 3KE8 A;  2DXV A;  2EK3 A;  2HUV A;  2E16 A;  3DNF A;  4H4D A;  2E07 A;  2PB5 A;  2EHC A;  3UWM A;  2YBO A;  2P2X A;  2E4R A;  2EK4 A;  2EH4 A;  1WDE A;  1PJS A;  3I4T A;  4MUY A;  3SZO A;  2ENI A;  2P6D A;  2OWG A;  2EH2 A;  3FFY A;  1WNG A;  2HR8 A;  3KWP A;  3ND1 A;  4EB3 A;  2DEK A;  2EN5 A;  3T0G A;  2DSH A;  3UV3 A;  3UV7 A;  3KEL A;  2DXW A;  2PB4 A;  1V9A A;  2EGL A;  2CBF A;  2P6K A;  3SZL A;  2ELE A;  4MV5 A;  3UV6 A;  2PCG A;  2EKA A;  2P9D A;  2EJJ A;  2NPN A;  2E0N A;  3F7T A;  5HW4 A;  2ZVB A;  4MV0 A;  2YBQ A;  2EL3 A;  1VE2 A;  2PB6 A;  1VHV A;  2EMU A;  2EGS A;  2KYY A;  3SZU A;  2EK2 A;  2EH5 A;  3FQ6 A;  2E8H A;  2OWU A;  3LMM A;  4N7B A;  2PCI A;  1S4D A;  3HH1 A;  2E8Q A;  2DSG A;  2PCM A;  2E0K A;  2OWF A;  1CBF A;  3KE9 A;  2DV4 A;  1PJQ A;  2OWV A;  3KEM A;  2DV7 A;  2E7R A;  2HUT A;  3NUT A;  2EHL A;  2PCK A;  2EK7 A;  3ZGN A;  1VCE A;  4MUX A;  1WYZ A;  3URK A;  2DSI A;  2EGB A;  3T0F A;  2BB3 A;  2DV5 A;  2EL2 A;  2PCA A;  2P6L A;  2EL1 A;  2PCH A;  2E4N A;  2P5F A;  3KEF A;  2OWK A;  2DV3 A;  2HUQ A;  3NDC A;  2E8R A;  2QBU A;  2ELD A;  4H4E A;  2EJZ A;  4H4C A;  4E16 A;  2ZVC A;  3NEI A;  2E17 A;  1PJT A;  2E8S A;  3TIX B;  2ED3 A;  2HUX A;  3UTD A;  2EL0 A;  2EEQ A;  2EJK A;  2DXX A;  2P6I A;  1VA0 A;  3ZGL A;  2Z6R A;  3UTC A;  2ED5 A;  2E08 A;  2P5C A;  2E15 A;  2EMR A; 
#chains in the Genus database with same CATH homology
 3KE8 A;  2DXV A;  2EK3 A;  2HUV A;  2E16 A;  3DNF A;  4H4D A;  2E07 A;  2PB5 A;  2EHC A;  3UWM A;  2YBO A;  2P2X A;  2E4R A;  2EK4 A;  2EH4 A;  1WDE A;  1PJS A;  3I4T A;  4MUY A;  3SZO A;  2ENI A;  2P6D A;  2OWG A;  2EH2 A;  3FFY A;  1WNG A;  2HR8 A;  3KWP A;  3ND1 A;  4EB3 A;  2DEK A;  2EN5 A;  3T0G A;  2DSH A;  3UV3 A;  3UV7 A;  3KEL A;  2DXW A;  2PB4 A;  1V9A A;  2EGL A;  2CBF A;  2P6K A;  3SZL A;  2ELE A;  4MV5 A;  3UV6 A;  2PCG A;  2EKA A;  2P9D A;  2EJJ A;  2NPN A;  2E0N A;  3F7T A;  5HW4 A;  2ZVB A;  4MV0 A;  2YBQ A;  2EL3 A;  1VE2 A;  2PB6 A;  1VHV A;  2EMU A;  2EGS A;  2KYY A;  3SZU A;  2EK2 A;  2EH5 A;  3FQ6 A;  2E8H A;  2OWU A;  3LMM A;  4N7B A;  2PCI A;  1S4D A;  3HH1 A;  2E8Q A;  2DSG A;  2PCM A;  2E0K A;  2OWF A;  1CBF A;  3KE9 A;  2DV4 A;  1PJQ A;  2OWV A;  3KEM A;  2DV7 A;  2E7R A;  2HUT A;  3NUT A;  2EHL A;  2PCK A;  2EK7 A;  3ZGN A;  1VCE A;  4MUX A;  1WYZ A;  3URK A;  2DSI A;  2EGB A;  3T0F A;  2BB3 A;  2DV5 A;  2EL2 A;  2PCA A;  2P6L A;  2EL1 A;  2PCH A;  2E4N A;  2P5F A;  3KEF A;  2OWK A;  2DV3 A;  2HUQ A;  3NDC A;  2E8R A;  2QBU A;  2ELD A;  4H4E A;  2EJZ A;  4H4C A;  4E16 A;  2ZVC A;  3NEI A;  2E17 A;  1PJT A;  2E8S A;  3TIX B;  2ED3 A;  2HUX A;  3UTD A;  2EL0 A;  2EEQ A;  2EJK A;  2DXX A;  2P6I A;  1VA0 A;  3ZGL A;  2Z6R A;  3UTC A;  2ED5 A;  2E08 A;  2P5C A;  2E15 A;  2EMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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