2DVPA

Structure of ntpase from pyroccous horikoshii
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
184
structure length
184
Chain Sequence
MKIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWLKVNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Hypothetical protein PH1917
publication title Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 57
structure length 184
sequence length 184
ec nomenclature ec 3.6.1.66: XTP/dITP diphosphatase.
pdb deposition date 2006-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01725 Ham1p_like Ham1 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.950.10 Alpha Beta Alpha-Beta Complex Maf protein Maf protein 2dvpA00
1ZNOA 4P0UA 1U14A 2MJPA 1B78A 1EX2A 2I5DA 2Q16A 2DVPA 1EXCA 3S86A 1VP2A 4LU1A 4JHCA 1V7RA 4OO0A 1K7KA 2DVNA 2CARA 2PYUA 1U5WA 2E5XA 4F95A 2ZTIA 1ZWYA 2J4EA 2AMHA 4P0EA 2P5XA 4BNQA 2DVOA 4HEBA 3TQUA
chains in the Genus database with same CATH superfamily
1ZNOA 4CT8A 4P0UA 1U14A 2MJPA 4CTAB 1B78A 4UUXA 5KOLA 1EX2A 2I5DA 2Q16A 2DVPA 1EXCA 3S86A 1VP2A 4LU1A 4JHCA 4CTAA 1V7RA 4OO0A 1K7KA 4UOCA 4UUWA 2A9SA 2DVNA 2CARA 2PYUA 1U5WA 2E5XA 4F95A 2ZTIA 1ZWYA 2J4EA 2AMHA 4P0EA 2P5XA 4BNQA 5KVKA 2DVOA 4HEBA 4CT9A 3TQUA
chains in the Genus database with same CATH topology
1ZNOA 4P0UA 1U14A 2MJPA 1B78A 1EX2A 2I5DA 2Q16A 2DVPA 1EXCA 3S86A 1VP2A 4LU1A 4JHCA 1V7RA 4OO0A 1K7KA 2DVNA 2CARA 2PYUA 1U5WA 2E5XA 4F95A 2ZTIA 1ZWYA 2J4EA 2AMHA 4P0EA 2P5XA 4BNQA 2DVOA 4HEBA 3TQUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZNO A;  4P0U A;  1U14 A;  2MJP A;  1B78 A;  1EX2 A;  2I5D A;  2Q16 A;  2DVP A;  1EXC A;  3S86 A;  1VP2 A;  4LU1 A;  4JHC A;  1V7R A;  4OO0 A;  1K7K A;  2DVN A;  2CAR A;  2PYU A;  1U5W A;  2E5X A;  4F95 A;  2ZTI A;  1ZWY A;  2J4E A;  2AMH A;  4P0E A;  2P5X A;  4BNQ A;  2DVO A;  4HEB A;  3TQU A; 
#chains in the Genus database with same CATH topology
 1ZNO A;  4CT8 A;  4P0U A;  1U14 A;  2MJP A;  4CTA B;  1B78 A;  4UUX A;  5KOL A;  1EX2 A;  2I5D A;  2Q16 A;  2DVP A;  1EXC A;  3S86 A;  1VP2 A;  4LU1 A;  4JHC A;  4CTA A;  1V7R A;  4OO0 A;  1K7K A;  4UOC A;  4UUW A;  2A9S A;  2DVN A;  2CAR A;  2PYU A;  1U5W A;  2E5X A;  4F95 A;  2ZTI A;  1ZWY A;  2J4E A;  2AMH A;  4P0E A;  2P5X A;  4BNQ A;  5KVK A;  2DVO A;  4HEB A;  4CT9 A;  3TQU A; 
#chains in the Genus database with same CATH homology
 1ZNO A;  4P0U A;  1U14 A;  2MJP A;  1B78 A;  1EX2 A;  2I5D A;  2Q16 A;  2DVP A;  1EXC A;  3S86 A;  1VP2 A;  4LU1 A;  4JHC A;  1V7R A;  4OO0 A;  1K7K A;  2DVN A;  2CAR A;  2PYU A;  1U5W A;  2E5X A;  4F95 A;  2ZTI A;  1ZWY A;  2J4E A;  2AMH A;  4P0E A;  2P5X A;  4BNQ A;  2DVO A;  4HEB A;  3TQU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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