2DXLA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxlA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxlA01
2ZO9B 2DXNA 3D03A 2DXLA 2ZOAA
chains in the Genus database with same CATH superfamily
2IE4C 5F3WA 4GHNA 3H61A 1TIDB 2KLNA 1W24A 2QJCA 1WXXA 5EZBA 4O24A 2AHDA 4DGFA 1XZWA 4FCXA 4DSYA 1OI8A 5EQVA 3H63A 4DMGA 1FJMA 4V0XA 3JYFA 4UT2A 1J7XA 4DGHA 4HD0A 4Q7FA 4TUGA 4DT2A 4HYLA 2GJUA 2ZO9B 2NYLC 3QG5C 1XM7A 2CV9A 4I5LC 3D03A 2HYPA 3RQZA 2OASA 4ZX2A 1FC6A 1VC1A 3IHAA 3F43A 2ZBMA 3C9FA 3H68A 4F0ZA 1V73A 1S70A 4LACC 4B2OA 2WDEA 5EUZA 3GK7A 1M63A 3DSCA 3AUZA 3MOGA 3DUPA 3KBPA 3QDQA 1MF8A 4H2FA 4I5NC 4ORBA 3IF5A 1H4ZA 3C0KA 2BCDA 2DXNA 2VY9A 1AUZA 4M0VA 1THNB 3CK2A 1S3MA 4MP0A 3JU4A 3ZU0A 3D3UA 3GVLA 3IB8A 1V0FA 3GVJA 3QFMA 1USHA 3T1IA 5JPFA 3K50A 1IT6A 3LL8A 3IH9A 1U32A 1N6FA 3E0JA 4FBQA 4FBKA 4V0VA 1S3LA 4L8KA 3V4YA 2NXFA 2RRLA 5EUWA 3V97A 1Z2XA 3ZXNA 2ZOAA 2O8AA 1FC9A 1QFCA 1S8EA 2R17A 2HYOA 3AV0A 3EGHA 5INBA 2P6BA 4TUIA 4O4KA 4YKEA 1FCFA 1AUIA 4H1YP 3NY7A 3DJAA 5EUUA 3K7WC 3THOB 1N6DA 3QFNA 4H2IA 1HO5A 1TILB 5GTUA 3LKLA 4MOVA 1T70A 4ORAA 3DSDA 1UTEA 2YEQA 2KKNA 2DXLA 3QFOA 3AGEA 5JJTA 2BQ8X 4JC0A 1T6RA 3ZTVA 3IVEA 4NZVA 4DHLA 2QFPA 4ZVZA 5B8IA 3MGLA 2WDDA 1S95A 1SU1A 2Z1AA 3FGAC 3DW8C 1NNWA 5DNYA 1T71A 4JA7A 1SBOA 3RL4A 3GVKA 5EUSA 3GHFA 2WDFA 2KA5A 4ORCA 1K32A 4OR9A 5J28A 3IB7A 4LU9A 2XMOA 1G5BA 3P71C 1QHWA 1Z2WA 2HY1A 3IH8A 3GMFA 4XPNA 1H4XA 3H60A 1WARA 3T6OA 4H1SA 1JK7A 2NYMC 4IL1A 1BPLA 3QFKA 1WXWA 4H2GA 5IOHA 3IVDA 2Z72A 3LDFA 1BUZA 1HPUA 4MOYA 4V0WA 5HPEA 4G9JA 2BDXA 3H66A 5C1VA 3PSNA 4QTPA 3H67A 3PSOA 2IAEC 3OIRA 3H62B 4HIZA 5EUXA 3AGDA 3RL3A 4O5GA 3EH7A 4AEJA 2AS0A 4IYPC 2NPPC 4FBWA 4J6OA 4KBPA 3TGHA 1KBPA 4L1CA 2O8GA 4LTYA 3IHBA 4KKZA 5JPEA 4UWQA 1FC7A 2Z06A 2A22A 3LLOA 3V8VA 2JOGA 3FLOA 3N5UA 4UT3B 3ICFA 3RL5A 3E7AA 1N6EA 3E7BA 4XS5A 2WDCA 2CWWA 4H2BA 3H69A 3K7VC 2QFRA 4O43A 1TCOA 3EGGA 4UT3A 4WWLA 2USHA 1HP1A 2YVTA 1HF2A 1OIDA 3HVQA 3ZTBA 1H4YA 1II7A 3THNA 2IE3C 1WAO1 1V0EA 4AE2A 1OIEA 1UF3A 2Q8UA 3DORA 3C5WC 3OIZA 1TH8B 3GVEA 3H64A 3VSEA 2DFJA 4JA9A 1S3NA 2B78A
chains in the Genus database with same CATH topology
2IE4C 5F3WA 4GHNA 3H61A 1W24A 2QJCA 4O24A 2AHDA 1XZWA 4FCXA 4DSYA 1OI8A 5EQVA 3H63A 1FJMA 4V0XA 3JYFA 4UT2A 1J7XA 4TUGA 4HD0A 4Q7FA 4DT2A 2GJUA 2ZO9B 2NYLC 3QG5C 1XM7A 2CV9A 4I5LC 3D03A 2HYPA 3RQZA 4ZX2A 1FC6A 2ZBMA 3C9FA 3H68A 4F0ZA 1V73A 1S70A 4LACC 4B2OA 2WDEA 1M63A 3DSCA 3AUZA 3MOGA 3DUPA 3KBPA 1MF8A 4H2FA 4I5NC 4ORBA 2BCDA 2DXNA 4M0VA 3CK2A 1S3MA 4MP0A 3ZU0A 3IB8A 3T1IA 3QFMA 1USHA 5JPFA 3K50A 1IT6A 3LL8A 1U32A 3E0JA 1N6FA 4FBQA 4FBKA 4V0VA 1S3LA 4L8KA 3V4YA 2NXFA 2RRLA 1Z2XA 4UT3A 2O8AA 2ZOAA 3EGHA 1FC9A 1QFCA 1S8EA 2R17A 2HYOA 3AV0A 5INBA 4TUIA 2P6BA 4O4KA 4YKEA 1FCFA 1AUIA 4H1YP 3DJAA 3K7WC 3THOB 1N6DA 3QFNA 4H2IA 1HO5A 5GTUA 4MOVA 1T70A 4ORAA 3DSDA 1UTEA 2YEQA 2KKNA 2DXLA 3QFOA 5JJTA 2BQ8X 4JC0A 3ZTVA 3IVEA 4NZVA 4DHLA 2QFPA 4ZVZA 5B8IA 2WDDA 1S95A 1SU1A 2Z1AA 3FGAC 3DW8C 1NNWA 5DNYA 1T71A 4JA7A 3RL4A 3GHFA 2WDFA 4ORCA 1K32A 4OR9A 5J28A 3IB7A 4LU9A 2XMOA 1G5BA 3P71C 1QHWA 1Z2WA 2HY1A 3GMFA 4XPNA 3H60A 1WARA 4H1SA 1JK7A 2NYMC 4IL1A 1BPLA 3QFKA 4H2GA 5IOHA 3IVDA 2Z72A 4V0WA 1HPUA 4MOYA 5HPEA 4G9JA 2BDXA 3H66A 5C1VA 3PSNA 3H67A 3PSOA 2IAEC 3H62B 3RL3A 4AEJA 4IYPC 2NPPC 4FBWA 4J6OA 4KBPA 3TGHA 1KBPA 4L1CA 2O8GA 4LTYA 4KKZA 5JPEA 4UWQA 1FC7A 2Z06A 2A22A 2JOGA 3FLOA 3N5UA 4UT3B 3RL5A 3ICFA 3E7AA 1N6EA 3E7BA 2WDCA 4H2BA 3H69A 3K7VC 2QFRA 4O43A 1TCOA 3EGGA 4WWLA 2USHA 1HP1A 2YVTA 1OIDA 3HVQA 1II7A 3THNA 2IE3C 1WAO1 4AE2A 1UF3A 1OIEA 2Q8UA 3C5WC 3DORA 3GVEA 3H64A 4JA9A 4O5GA 2DFJA 1S3NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZO9 B;  2DXN A;  3D03 A;  2DXL A;  2ZOA A; 
#chains in the Genus database with same CATH topology
 2IE4 C;  5F3W A;  4GHN A;  3H61 A;  1TID B;  2KLN A;  1W24 A;  2QJC A;  1WXX A;  5EZB A;  4O24 A;  2AHD A;  4DGF A;  1XZW A;  4FCX A;  4DSY A;  1OI8 A;  5EQV A;  3H63 A;  4DMG A;  1FJM A;  4V0X A;  3JYF A;  4UT2 A;  1J7X A;  4DGH A;  4HD0 A;  4Q7F A;  4TUG A;  4DT2 A;  4HYL A;  2GJU A;  2ZO9 B;  2NYL C;  3QG5 C;  1XM7 A;  2CV9 A;  4I5L C;  3D03 A;  2HYP A;  3RQZ A;  2OAS A;  4ZX2 A;  1FC6 A;  1VC1 A;  3IHA A;  3F43 A;  2ZBM A;  3C9F A;  3H68 A;  4F0Z A;  1V73 A;  1S70 A;  4LAC C;  4B2O A;  2WDE A;  5EUZ A;  3GK7 A;  1M63 A;  3DSC A;  3AUZ A;  3MOG A;  3DUP A;  3KBP A;  3QDQ A;  1MF8 A;  4H2F A;  4I5N C;  4ORB A;  3IF5 A;  1H4Z A;  3C0K A;  2BCD A;  2DXN A;  2VY9 A;  1AUZ A;  4M0V A;  1THN B;  3CK2 A;  1S3M A;  4MP0 A;  3JU4 A;  3ZU0 A;  3D3U A;  3GVL A;  3IB8 A;  1V0F A;  3GVJ A;  3QFM A;  1USH A;  3T1I A;  5JPF A;  3K50 A;  1IT6 A;  3LL8 A;  3IH9 A;  1U32 A;  1N6F A;  3E0J A;  4FBQ A;  4FBK A;  4V0V A;  1S3L A;  4L8K A;  3V4Y A;  2NXF A;  2RRL A;  5EUW A;  3V97 A;  1Z2X A;  3ZXN A;  2ZOA A;  2O8A A;  1FC9 A;  1QFC A;  1S8E A;  2R17 A;  2HYO A;  3AV0 A;  3EGH A;  5INB A;  2P6B A;  4TUI A;  4O4K A;  4YKE A;  1FCF A;  1AUI A;  4H1Y P;  3NY7 A;  3DJA A;  5EUU A;  3K7W C;  3THO B;  1N6D A;  3QFN A;  4H2I A;  1HO5 A;  1TIL B;  5GTU A;  3LKL A;  4MOV A;  1T70 A;  4ORA A;  3DSD A;  1UTE A;  2YEQ A;  2KKN A;  2DXL A;  3QFO A;  3AGE A;  5JJT A;  2BQ8 X;  4JC0 A;  1T6R A;  3ZTV A;  3IVE A;  4NZV A;  4DHL A;  2QFP A;  4ZVZ A;  5B8I A;  3MGL A;  2WDD A;  1S95 A;  1SU1 A;  2Z1A A;  3FGA C;  3DW8 C;  1NNW A;  5DNY A;  1T71 A;  4JA7 A;  1SBO A;  3RL4 A;  3GVK A;  5EUS A;  3GHF A;  2WDF A;  2KA5 A;  4ORC A;  1K32 A;  4OR9 A;  5J28 A;  3IB7 A;  4LU9 A;  2XMO A;  1G5B A;  3P71 C;  1QHW A;  1Z2W A;  2HY1 A;  3IH8 A;  3GMF A;  4XPN A;  1H4X A;  3H60 A;  1WAR A;  3T6O A;  4H1S A;  1JK7 A;  2NYM C;  4IL1 A;  1BPL A;  3QFK A;  1WXW A;  4H2G A;  5IOH A;  3IVD A;  2Z72 A;  3LDF A;  1BUZ A;  1HPU A;  4MOY A;  4V0W A;  5HPE A;  4G9J A;  2BDX A;  3H66 A;  5C1V A;  3PSN A;  4QTP A;  3H67 A;  3PSO A;  2IAE C;  3OIR A;  3H62 B;  4HIZ A;  5EUX A;  3AGD A;  3RL3 A;  4O5G A;  3EH7 A;  4AEJ A;  2AS0 A;  4IYP C;  2NPP C;  4FBW A;  4J6O A;  4KBP A;  3TGH A;  1KBP A;  4L1C A;  2O8G A;  4LTY A;  3IHB A;  4KKZ A;  5JPE A;  4UWQ A;  1FC7 A;  2Z06 A;  2A22 A;  3LLO A;  3V8V A;  2JOG A;  3FLO A;  3N5U A;  4UT3 B;  3ICF A;  3RL5 A;  3E7A A;  1N6E A;  3E7B A;  4XS5 A;  2WDC A;  2CWW A;  4H2B A;  3H69 A;  3K7V C;  2QFR A;  4O43 A;  1TCO A;  3EGG A;  4UT3 A;  4WWL A;  2USH A;  1HP1 A;  2YVT A;  1HF2 A;  1OID A;  3HVQ A;  3ZTB A;  1H4Y A;  1II7 A;  3THN A;  2IE3 C;  1WAO 1;  1V0E A;  4AE2 A;  1OIE A;  1UF3 A;  2Q8U A;  3DOR A;  3C5W C;  3OIZ A;  1TH8 B;  3GVE A;  3H64 A;  3VSE A;  2DFJ A;  4JA9 A;  1S3N A;  2B78 A; 
#chains in the Genus database with same CATH homology
 2IE4 C;  5F3W A;  4GHN A;  3H61 A;  1W24 A;  2QJC A;  4O24 A;  2AHD A;  1XZW A;  4FCX A;  4DSY A;  1OI8 A;  5EQV A;  3H63 A;  1FJM A;  4V0X A;  3JYF A;  4UT2 A;  1J7X A;  4TUG A;  4HD0 A;  4Q7F A;  4DT2 A;  2GJU A;  2ZO9 B;  2NYL C;  3QG5 C;  1XM7 A;  2CV9 A;  4I5L C;  3D03 A;  2HYP A;  3RQZ A;  4ZX2 A;  1FC6 A;  2ZBM A;  3C9F A;  3H68 A;  4F0Z A;  1V73 A;  1S70 A;  4LAC C;  4B2O A;  2WDE A;  1M63 A;  3DSC A;  3AUZ A;  3MOG A;  3DUP A;  3KBP A;  1MF8 A;  4H2F A;  4I5N C;  4ORB A;  2BCD A;  2DXN A;  4M0V A;  3CK2 A;  1S3M A;  4MP0 A;  3ZU0 A;  3IB8 A;  3T1I A;  3QFM A;  1USH A;  5JPF A;  3K50 A;  1IT6 A;  3LL8 A;  1U32 A;  3E0J A;  1N6F A;  4FBQ A;  4FBK A;  4V0V A;  1S3L A;  4L8K A;  3V4Y A;  2NXF A;  2RRL A;  1Z2X A;  4UT3 A;  2O8A A;  2ZOA A;  3EGH A;  1FC9 A;  1QFC A;  1S8E A;  2R17 A;  2HYO A;  3AV0 A;  5INB A;  4TUI A;  2P6B A;  4O4K A;  4YKE A;  1FCF A;  1AUI A;  4H1Y P;  3DJA A;  3K7W C;  3THO B;  1N6D A;  3QFN A;  4H2I A;  1HO5 A;  5GTU A;  4MOV A;  1T70 A;  4ORA A;  3DSD A;  1UTE A;  2YEQ A;  2KKN A;  2DXL A;  3QFO A;  5JJT A;  2BQ8 X;  4JC0 A;  3ZTV A;  3IVE A;  4NZV A;  4DHL A;  2QFP A;  4ZVZ A;  5B8I A;  2WDD A;  1S95 A;  1SU1 A;  2Z1A A;  3FGA C;  3DW8 C;  1NNW A;  5DNY A;  1T71 A;  4JA7 A;  3RL4 A;  3GHF A;  2WDF A;  4ORC A;  1K32 A;  4OR9 A;  5J28 A;  3IB7 A;  4LU9 A;  2XMO A;  1G5B A;  3P71 C;  1QHW A;  1Z2W A;  2HY1 A;  3GMF A;  4XPN A;  3H60 A;  1WAR A;  4H1S A;  1JK7 A;  2NYM C;  4IL1 A;  1BPL A;  3QFK A;  4H2G A;  5IOH A;  3IVD A;  2Z72 A;  4V0W A;  1HPU A;  4MOY A;  5HPE A;  4G9J A;  2BDX A;  3H66 A;  5C1V A;  3PSN A;  3H67 A;  3PSO A;  2IAE C;  3H62 B;  3RL3 A;  4AEJ A;  4IYP C;  2NPP C;  4FBW A;  4J6O A;  4KBP A;  3TGH A;  1KBP A;  4L1C A;  2O8G A;  4LTY A;  4KKZ A;  5JPE A;  4UWQ A;  1FC7 A;  2Z06 A;  2A22 A;  2JOG A;  3FLO A;  3N5U A;  4UT3 B;  3RL5 A;  3ICF A;  3E7A A;  1N6E A;  3E7B A;  2WDC A;  4H2B A;  3H69 A;  3K7V C;  2QFR A;  4O43 A;  1TCO A;  3EGG A;  4WWL A;  2USH A;  1HP1 A;  2YVT A;  1OID A;  3HVQ A;  1II7 A;  3THN A;  2IE3 C;  1WAO 1;  4AE2 A;  1UF3 A;  1OIE A;  2Q8U A;  3C5W C;  3DOR A;  3GVE A;  3H64 A;  4JA9 A;  4O5G A;  2DFJ A;  1S3N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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