2DXLA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Enterobacter aerogenes
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxlA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxlA01
2ZOAA 3D03A 2ZO9B 2DXNA 2DXLA
chains in the Genus database with same CATH superfamily
4L8KA 5EQVA 2QJCA 5B8IA 1OI8A 4JC0A 4UT3B 5INBA 1AUIA 4QTPA 4DT2A 3PSNA 1FCFA 2IE4C 2BQ8X 4H2IA 4O43A 2ZBMA 3IHAA 4DGHA 5GTUA 4TUIA 3ZTVA 4MP0A 3F43A 1S8EA 3GVEA 2O8AA 2QFRA 3H61A 4DMGA 1HPUA 2DXNA 1UTEA 1WARA 3CK2A 3K7VC 4WWLA 4ZX2A 1S3NA 4FCXA 3JU4A 1AUZA 2NXFA 3RL5A 2GJUA 2ZOAA 2QFPA 1JK7A 3OIZA 3IB8A 4B2OA 3H68A 2Z06A 2USHA 4HIZA 3IVDA 5EZBA 2CV9A 1S3MA 1FC6A 1N6DA 1SU1A 2R17A 3LKLA 3IB7A 1TCOA 4ZVZA 1N6EA 1WXXA 5HPEA 4H2GA 3DSDA 2DFJA 5C1VA 3MOGA 3D3UA 3ZXNA 3FGAC 2B78A 1H4XA 3OIRA 2HYOA 5F3WA 3AGEA 3DORA 3AGDA 1USHA 2A22A 3QG5C 4FBWA 3V4YA 4O24A 4FBKA 2KLNA 4DGFA 4YKEA 3TGHA 1T71A 3EGHA 3JYFA 1OIEA 4XPNA 3ZU0A 3GVJA 2AS0A 2DXLA 3IHBA 1T6RA 3MGLA 5EUXA 2NPPC 3PSOA 4ORAA 1Z2WA 3RQZA 1II7A 1HF2A 1MF8A 1NNWA 3LLOA 4M0VA 4XS5A 3QDQA 2HY1A 4TUGA 4G9JA 2WDEA 4ORBA 1KBPA 1WXWA 1W24A 3H67A 3LL8A 3RL4A 3T1IA 2JOGA 1TILB 3C0KA 5JPFA 4H2BA 4LACC 2YVTA 3ICFA 3D03A 1UF3A 1HO5A 3H69A 3DUPA 1V0FA 4IYPC 5J28A 3QFOA 5JPEA 1IT6A 3RL3A 1FC7A 2P6BA 5IOHA 3LDFA 4I5LC 1Z2XA 2BCDA 5EUZA 3DJAA 4ORCA 1S70A 2KKNA 4KBPA 4L1CA 1V0EA 1OIDA 3N5UA 2IAEC 2Q8UA 1G5BA 3H62B 5EUSA 1FC9A 1TIDB 5EUUA 1XZWA 2WDCA 4Q7FA 3H64A 3T6OA 3GVLA 4LTYA 3H66A 1K32A 3QFMA 3K7WC 3H63A 4FBQA 4O5GA 4O4KA 2NYMC 3IH9A 2Z72A 2WDDA 3FLOA 4J6OA 4GHNA 4HYLA 1BUZA 3IVEA 1H4ZA 2XMOA 1J7XA 3EH7A 3GVKA 3H60A 4AE2A 3C9FA 4AEJA 3C5WC 4DHLA 4V0WA 4OR9A 5DNYA 2NYLC 3KBPA 4JA7A 1SBOA 1S95A 1WAO1 2CWWA 1QHWA 3THNA 2IE3C 3DW8C 4IL1A 2AHDA 3EGGA 4H1YP 3QFKA 3IF5A 2HYPA 3THOB 5JJTA 3E7BA 4V0XA 1VC1A 2O8GA 4MOVA 4DSYA 1U32A 2RRLA 4UT3A 2VY9A 2YEQA 2WDFA 4F0ZA 4H2FA 1H4YA 3K50A 4UWQA 3AV0A 4MOYA 1BPLA 5EUWA 3ZTBA 1TH8B 3V8VA 1FJMA 4I5NC 1THNB 1N6FA 4KKZA 3E7AA 1M63A 4LU9A 2OASA 3QFNA 1T70A 4H1SA 4NZVA 3DSCA 4HD0A 2Z1AA 3VSEA 3NY7A 1HP1A 2ZO9B 3GK7A 4V0VA 3HVQA 1V73A 3AUZA 4JA9A 3E0JA 4UT2A 3IH8A 3GHFA 1S3LA 2BDXA 2KA5A 3V97A 3P71C 1XM7A 3GMFA 1QFCA
chains in the Genus database with same CATH topology
4L8KA 5EQVA 2QJCA 5B8IA 1OI8A 4JC0A 4UT3B 5INBA 1AUIA 4DT2A 3PSNA 1FCFA 2IE4C 2BQ8X 4H2IA 4O43A 2ZBMA 5GTUA 4TUIA 3ZTVA 4MP0A 1S8EA 3GVEA 2O8AA 2QFRA 3H61A 1HPUA 2DXNA 1UTEA 1WARA 3CK2A 3K7VC 4WWLA 4ZX2A 1S3NA 4FCXA 2NXFA 3RL5A 2GJUA 2ZOAA 2QFPA 1JK7A 3IB8A 4B2OA 3H68A 2Z06A 2USHA 3IVDA 2CV9A 1S3MA 1FC6A 1N6DA 1SU1A 2R17A 3IB7A 4ZVZA 1TCOA 1N6EA 5HPEA 4H2GA 3DSDA 2DFJA 5C1VA 3MOGA 3FGAC 2HYOA 5F3WA 3DORA 1USHA 2A22A 3QG5C 4FBWA 3V4YA 4O24A 4FBKA 4YKEA 3TGHA 1T71A 3EGHA 3JYFA 1OIEA 4XPNA 3ZU0A 2DXLA 2NPPC 3PSOA 4ORAA 1Z2WA 3RQZA 1II7A 1MF8A 1NNWA 4M0VA 2HY1A 4TUGA 4G9JA 2WDEA 4ORBA 1KBPA 3RL4A 1W24A 3H67A 3LL8A 3T1IA 4KKZA 2JOGA 5JPFA 4H2BA 4LACC 2YVTA 3ICFA 3D03A 1UF3A 1HO5A 3H69A 3DUPA 4IYPC 5J28A 3QFOA 5JPEA 1IT6A 3RL3A 1FC7A 2P6BA 5IOHA 4I5LC 1Z2XA 2BCDA 3DJAA 4ORCA 1S70A 2KKNA 4KBPA 4L1CA 1OIDA 3N5UA 2IAEC 2Q8UA 1G5BA 3H62B 1FC9A 1XZWA 2WDCA 4Q7FA 3H64A 4LTYA 3H66A 1K32A 3QFMA 3K7WC 3H63A 4FBQA 4O5GA 4O4KA 2NYMC 2Z72A 2WDDA 3FLOA 4J6OA 4GHNA 3IVEA 2XMOA 1J7XA 3H60A 4DHLA 4AE2A 3C9FA 4AEJA 3C5WC 4V0WA 4OR9A 5DNYA 2NYLC 3KBPA 4JA7A 1S95A 1WAO1 1QHWA 3THNA 2IE3C 3DW8C 4IL1A 2AHDA 3EGGA 4H1YP 3QFKA 2HYPA 3THOB 5JJTA 3E7BA 4V0XA 4MOVA 2O8GA 4DSYA 1U32A 2RRLA 4UT3A 2YEQA 2WDFA 4F0ZA 4H2FA 3K50A 4UWQA 3AV0A 4MOYA 1BPLA 1FJMA 4I5NC 1N6FA 3E7AA 1M63A 4LU9A 3QFNA 1T70A 4H1SA 4NZVA 3DSCA 4HD0A 2Z1AA 1HP1A 2ZO9B 4V0VA 3HVQA 1V73A 3AUZA 4JA9A 3E0JA 4UT2A 3GHFA 1S3LA 2BDXA 3P71C 1XM7A 3GMFA 1QFCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  3D03 A;  2ZO9 B;  2DXN A;  2DXL A; 
#chains in the Genus database with same CATH topology
 4L8K A;  5EQV A;  2QJC A;  5B8I A;  1OI8 A;  4JC0 A;  4UT3 B;  5INB A;  1AUI A;  4QTP A;  4DT2 A;  3PSN A;  1FCF A;  2IE4 C;  2BQ8 X;  4H2I A;  4O43 A;  2ZBM A;  3IHA A;  4DGH A;  5GTU A;  4TUI A;  3ZTV A;  4MP0 A;  3F43 A;  1S8E A;  3GVE A;  2O8A A;  2QFR A;  3H61 A;  4DMG A;  1HPU A;  2DXN A;  1UTE A;  1WAR A;  3CK2 A;  3K7V C;  4WWL A;  4ZX2 A;  1S3N A;  4FCX A;  3JU4 A;  1AUZ A;  2NXF A;  3RL5 A;  2GJU A;  2ZOA A;  2QFP A;  1JK7 A;  3OIZ A;  3IB8 A;  4B2O A;  3H68 A;  2Z06 A;  2USH A;  4HIZ A;  3IVD A;  5EZB A;  2CV9 A;  1S3M A;  1FC6 A;  1N6D A;  1SU1 A;  2R17 A;  3LKL A;  3IB7 A;  1TCO A;  4ZVZ A;  1N6E A;  1WXX A;  5HPE A;  4H2G A;  3DSD A;  2DFJ A;  5C1V A;  3MOG A;  3D3U A;  3ZXN A;  3FGA C;  2B78 A;  1H4X A;  3OIR A;  2HYO A;  5F3W A;  3AGE A;  3DOR A;  3AGD A;  1USH A;  2A22 A;  3QG5 C;  4FBW A;  3V4Y A;  4O24 A;  4FBK A;  2KLN A;  4DGF A;  4YKE A;  3TGH A;  1T71 A;  3EGH A;  3JYF A;  1OIE A;  4XPN A;  3ZU0 A;  3GVJ A;  2AS0 A;  2DXL A;  3IHB A;  1T6R A;  3MGL A;  5EUX A;  2NPP C;  3PSO A;  4ORA A;  1Z2W A;  3RQZ A;  1II7 A;  1HF2 A;  1MF8 A;  1NNW A;  3LLO A;  4M0V A;  4XS5 A;  3QDQ A;  2HY1 A;  4TUG A;  4G9J A;  2WDE A;  4ORB A;  1KBP A;  1WXW A;  1W24 A;  3H67 A;  3LL8 A;  3RL4 A;  3T1I A;  2JOG A;  1TIL B;  3C0K A;  5JPF A;  4H2B A;  4LAC C;  2YVT A;  3ICF A;  3D03 A;  1UF3 A;  1HO5 A;  3H69 A;  3DUP A;  1V0F A;  4IYP C;  5J28 A;  3QFO A;  5JPE A;  1IT6 A;  3RL3 A;  1FC7 A;  2P6B A;  5IOH A;  3LDF A;  4I5L C;  1Z2X A;  2BCD A;  5EUZ A;  3DJA A;  4ORC A;  1S70 A;  2KKN A;  4KBP A;  4L1C A;  1V0E A;  1OID A;  3N5U A;  2IAE C;  2Q8U A;  1G5B A;  3H62 B;  5EUS A;  1FC9 A;  1TID B;  5EUU A;  1XZW A;  2WDC A;  4Q7F A;  3H64 A;  3T6O A;  3GVL A;  4LTY A;  3H66 A;  1K32 A;  3QFM A;  3K7W C;  3H63 A;  4FBQ A;  4O5G A;  4O4K A;  2NYM C;  3IH9 A;  2Z72 A;  2WDD A;  3FLO A;  4J6O A;  4GHN A;  4HYL A;  1BUZ A;  3IVE A;  1H4Z A;  2XMO A;  1J7X A;  3EH7 A;  3GVK A;  3H60 A;  4AE2 A;  3C9F A;  4AEJ A;  3C5W C;  4DHL A;  4V0W A;  4OR9 A;  5DNY A;  2NYL C;  3KBP A;  4JA7 A;  1SBO A;  1S95 A;  1WAO 1;  2CWW A;  1QHW A;  3THN A;  2IE3 C;  3DW8 C;  4IL1 A;  2AHD A;  3EGG A;  4H1Y P;  3QFK A;  3IF5 A;  2HYP A;  3THO B;  5JJT A;  3E7B A;  4V0X A;  1VC1 A;  2O8G A;  4MOV A;  4DSY A;  1U32 A;  2RRL A;  4UT3 A;  2VY9 A;  2YEQ A;  2WDF A;  4F0Z A;  4H2F A;  1H4Y A;  3K50 A;  4UWQ A;  3AV0 A;  4MOY A;  1BPL A;  5EUW A;  3ZTB A;  1TH8 B;  3V8V A;  1FJM A;  4I5N C;  1THN B;  1N6F A;  4KKZ A;  3E7A A;  1M63 A;  4LU9 A;  2OAS A;  3QFN A;  1T70 A;  4H1S A;  4NZV A;  3DSC A;  4HD0 A;  2Z1A A;  3VSE A;  3NY7 A;  1HP1 A;  2ZO9 B;  3GK7 A;  4V0V A;  3HVQ A;  1V73 A;  3AUZ A;  4JA9 A;  3E0J A;  4UT2 A;  3IH8 A;  3GHF A;  1S3L A;  2BDX A;  2KA5 A;  3V97 A;  3P71 C;  1XM7 A;  3GMF A;  1QFC A; 
#chains in the Genus database with same CATH homology
 4L8K A;  5EQV A;  2QJC A;  5B8I A;  1OI8 A;  4JC0 A;  4UT3 B;  5INB A;  1AUI A;  4DT2 A;  3PSN A;  1FCF A;  2IE4 C;  2BQ8 X;  4H2I A;  4O43 A;  2ZBM A;  5GTU A;  4TUI A;  3ZTV A;  4MP0 A;  1S8E A;  3GVE A;  2O8A A;  2QFR A;  3H61 A;  1HPU A;  2DXN A;  1UTE A;  1WAR A;  3CK2 A;  3K7V C;  4WWL A;  4ZX2 A;  1S3N A;  4FCX A;  2NXF A;  3RL5 A;  2GJU A;  2ZOA A;  2QFP A;  1JK7 A;  3IB8 A;  4B2O A;  3H68 A;  2Z06 A;  2USH A;  3IVD A;  2CV9 A;  1S3M A;  1FC6 A;  1N6D A;  1SU1 A;  2R17 A;  3IB7 A;  4ZVZ A;  1TCO A;  1N6E A;  5HPE A;  4H2G A;  3DSD A;  2DFJ A;  5C1V A;  3MOG A;  3FGA C;  2HYO A;  5F3W A;  3DOR A;  1USH A;  2A22 A;  3QG5 C;  4FBW A;  3V4Y A;  4O24 A;  4FBK A;  4YKE A;  3TGH A;  1T71 A;  3EGH A;  3JYF A;  1OIE A;  4XPN A;  3ZU0 A;  2DXL A;  2NPP C;  3PSO A;  4ORA A;  1Z2W A;  3RQZ A;  1II7 A;  1MF8 A;  1NNW A;  4M0V A;  2HY1 A;  4TUG A;  4G9J A;  2WDE A;  4ORB A;  1KBP A;  3RL4 A;  1W24 A;  3H67 A;  3LL8 A;  3T1I A;  4KKZ A;  2JOG A;  5JPF A;  4H2B A;  4LAC C;  2YVT A;  3ICF A;  3D03 A;  1UF3 A;  1HO5 A;  3H69 A;  3DUP A;  4IYP C;  5J28 A;  3QFO A;  5JPE A;  1IT6 A;  3RL3 A;  1FC7 A;  2P6B A;  5IOH A;  4I5L C;  1Z2X A;  2BCD A;  3DJA A;  4ORC A;  1S70 A;  2KKN A;  4KBP A;  4L1C A;  1OID A;  3N5U A;  2IAE C;  2Q8U A;  1G5B A;  3H62 B;  1FC9 A;  1XZW A;  2WDC A;  4Q7F A;  3H64 A;  4LTY A;  3H66 A;  1K32 A;  3QFM A;  3K7W C;  3H63 A;  4FBQ A;  4O5G A;  4O4K A;  2NYM C;  2Z72 A;  2WDD A;  3FLO A;  4J6O A;  4GHN A;  3IVE A;  2XMO A;  1J7X A;  3H60 A;  4DHL A;  4AE2 A;  3C9F A;  4AEJ A;  3C5W C;  4V0W A;  4OR9 A;  5DNY A;  2NYL C;  3KBP A;  4JA7 A;  1S95 A;  1WAO 1;  1QHW A;  3THN A;  2IE3 C;  3DW8 C;  4IL1 A;  2AHD A;  3EGG A;  4H1Y P;  3QFK A;  2HYP A;  3THO B;  5JJT A;  3E7B A;  4V0X A;  4MOV A;  2O8G A;  4DSY A;  1U32 A;  2RRL A;  4UT3 A;  2YEQ A;  2WDF A;  4F0Z A;  4H2F A;  3K50 A;  4UWQ A;  3AV0 A;  4MOY A;  1BPL A;  1FJM A;  4I5N C;  1N6F A;  3E7A A;  1M63 A;  4LU9 A;  3QFN A;  1T70 A;  4H1S A;  4NZV A;  3DSC A;  4HD0 A;  2Z1A A;  1HP1 A;  2ZO9 B;  4V0V A;  3HVQ A;  1V73 A;  3AUZ A;  4JA9 A;  3E0J A;  4UT2 A;  3GHF A;  1S3L A;  2BDX A;  3P71 C;  1XM7 A;  3GMF A;  1QFC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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