2DXLA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxlA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxlA01
3D03A 2ZO9B 2ZOAA 2DXNA 2DXLA
chains in the Genus database with same CATH superfamily
4DT2A 4KKZA 3FGAC 3PSNA 2AS0A 1FC6A 3IVDA 5EQVA 2WDDA 3THNA 4ZX2A 2BCDA 2CWWA 2IAEC 2KLNA 3DJAA 1XM7A 5IOHA 1T70A 1TCOA 3K7WC 1II7A 3DORA 4HYLA 4G9JA 4H2GA 4HD0A 3OIZA 3OIRA 4FBKA 3QFNA 2DXLA 4JA7A 5J28A 3H61A 3GVKA 5EUZA 1TILB 3AGDA 3D3UA 2ZOAA 4H2IA 1T6RA 4LACC 1TH8B 1HF2A 3ZXNA 1Z2WA 3V97A 3VSEA 4KBPA 4ORAA 1S3MA 1HP1A 1QFCA 2AHDA 4MOYA 3ZU0A 2YVTA 3K7VC 5DNYA 4AE2A 4O4KA 5JPFA 3GVLA 3NY7A 3QFOA 1JK7A 1W24A 2DXNA 3JU4A 3RQZA 3T1IA 2USHA 4J6OA 3QG5C 3F43A 3GVEA 5EUUA 4FBQA 5EUSA 4O43A 3GK7A 4TUGA 4ZVZA 4XS5A 5JJTA 2Z1AA 3V4YA 4LTYA 1S95A 1NNWA 2XMOA 3V8VA 4IL1A 4V0WA 4FCXA 1SU1A 3H69A 3P71C 1H4ZA 1H4XA 4ORCA 4JC0A 5EZBA 4H1SA 4HIZA 3H60A 3H62B 1WXXA 4AEJA 1QHWA 2BQ8X 4UT2A 3MGLA 4LU9A 5F3WA 4M0VA 1H4YA 4DGHA 1AUZA 2O8GA 4I5NC 1FJMA 3QFMA 1J7XA 2Z72A 1N6EA 4TUIA 1USHA 2JOGA 1N6DA 3EGGA 4L8KA 1MF8A 1IT6A 3FLOA 4FBWA 2YEQA 2WDEA 4V0VA 2IE4C 2R17A 3IHAA 2DFJA 5JPEA 2Q8UA 2QJCA 3IB7A 4DHLA 4MOVA 1OI8A 3DSCA 1K32A 3HVQA 4NZVA 1AUIA 3GMFA 4MP0A 1TIDB 2WDCA 1HPUA 2HYPA 2QFRA 2Z06A 3H68A 1N6FA 1S3LA 4IYPC 2A22A 1V0FA 2VY9A 3K50A 3MOGA 4UT3B 5GTUA 2HYOA 1XZWA 1FC9A 3IHBA 1S70A 1Z2XA 2KA5A 2BDXA 1BUZA 3LLOA 4DGFA 1WARA 3LKLA 3C0KA 4ORBA 3KBPA 4DMGA 3DW8C 2KKNA 4V0XA 2OASA 1G5BA 4F0ZA 1FCFA 1HO5A 3RL3A 2QFPA 1FC7A 3QDQA 2IE3C 3H67A 5B8IA 1SBOA 2GJUA 1U32A 5HPEA 2ZBMA 4JA9A 1KBPA 3E7AA 2B78A 2CV9A 3GHFA 1BPLA 1M63A 1WAO1 3EGHA 1VC1A 3IF5A 3THOB 2NPPC 2RRLA 3ZTVA 2WDFA 1V73A 1S3NA 3CK2A 3DSDA 1WXWA 3IH9A 5EUXA 3IVEA 3RL4A 4DSYA 3T6OA 3IB8A 3H63A 1S8EA 3AV0A 3QFKA 3C9FA 4H1YP 3D03A 2NXFA 4B2OA 4I5LC 3N5UA 4L1CA 4H2FA 3GVJA 4OR9A 5C1VA 4O24A 3RL5A 1UTEA 4WWLA 4UT3A 1UF3A 2HY1A 3EH7A 1THNB 3LDFA 3ICFA 2ZO9B 2P6BA 3ZTBA 3H66A 4YKEA 4O5GA 1OIDA 3AGEA 3E0JA 2NYLC 3H64A 4GHNA 2NYMC 3LL8A 3E7BA 3AUZA 3C5WC 3TGHA 1V0EA 1OIEA 4UWQA 3DUPA 2O8AA 5INBA 4QTPA 4H2BA 4Q7FA 5EUWA 3PSOA 1T71A 3IH8A 4XPNA 3JYFA
chains in the Genus database with same CATH topology
4DT2A 4KKZA 3FGAC 3PSNA 3IVDA 1FC6A 3THNA 5EQVA 2WDDA 4ZX2A 2BCDA 2IAEC 3DJAA 1XM7A 5IOHA 1T70A 1TCOA 3K7WC 1II7A 3DORA 4G9JA 4H2GA 4HD0A 4FBKA 3QFNA 2DXLA 4JA7A 5J28A 3H61A 2ZOAA 4H2IA 4LACC 5B8IA 4KBPA 1Z2WA 4ORAA 4B2OA 5F3WA 1S3MA 1HP1A 1QFCA 2AHDA 4MOYA 3ZU0A 2YVTA 3K7VC 5DNYA 4O4KA 5JPFA 3QFOA 1JK7A 1W24A 2DXNA 3RQZA 3T1IA 2USHA 4J6OA 3QG5C 3GVEA 4FBQA 4O43A 4TUGA 4ZVZA 5JJTA 2Z1AA 3V4YA 4LTYA 1S95A 1NNWA 2XMOA 4IL1A 4V0WA 4FCXA 1SU1A 3H69A 3P71C 4ORCA 4JC0A 4H1SA 3H60A 3H62B 4AEJA 1QHWA 2BQ8X 4UT2A 4LU9A 4M0VA 2O8GA 4I5NC 1FJMA 3QFMA 1J7XA 2Z72A 1N6EA 4TUIA 1USHA 2JOGA 1N6DA 3EGGA 4L8KA 1MF8A 1IT6A 3FLOA 4FBWA 2YEQA 2WDEA 4V0VA 2IE4C 2R17A 2DFJA 2Q8UA 2QJCA 3IB7A 4DHLA 4MOVA 1OI8A 3DSCA 1K32A 3HVQA 4NZVA 1AUIA 3GMFA 4MP0A 2WDCA 2Z06A 1HPUA 2HYPA 2QFRA 3H68A 4IYPC 1N6FA 1S3LA 2A22A 5GTUA 3K50A 3MOGA 4UT3B 2HYOA 1XZWA 1FC9A 1S70A 1Z2XA 2BDXA 1WARA 4ORBA 3KBPA 3DW8C 2KKNA 4V0XA 4F0ZA 1G5BA 1FCFA 1HO5A 3RL3A 2QFPA 1FC7A 2IE3C 3H67A 2GJUA 1U32A 5HPEA 2ZBMA 4JA9A 1KBPA 3E7AA 2CV9A 3GHFA 1WAO1 1BPLA 1M63A 3EGHA 3THOB 2NPPC 2RRLA 3ZTVA 2WDFA 1V73A 1S3NA 3CK2A 3DSDA 3IVEA 3RL4A 4DSYA 3IB8A 3H63A 1S8EA 3AV0A 3QFKA 3C9FA 4H1YP 3D03A 2NXFA 4I5LC 3N5UA 4L1CA 4H2FA 4OR9A 5C1VA 4O24A 3RL5A 1UTEA 4WWLA 4UT3A 1UF3A 2HY1A 3ICFA 2ZO9B 2P6BA 3H66A 4YKEA 4O5GA 1OIDA 3E0JA 2NYLC 3H64A 4GHNA 2NYMC 3LL8A 3E7BA 3AUZA 3C5WC 3TGHA 1OIEA 4UWQA 3DUPA 2O8AA 5INBA 4H2BA 4Q7FA 4AE2A 3PSOA 1T71A 5JPEA 4XPNA 3JYFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D03 A;  2ZO9 B;  2ZOA A;  2DXN A;  2DXL A; 
#chains in the Genus database with same CATH topology
 4DT2 A;  4KKZ A;  3FGA C;  3PSN A;  2AS0 A;  1FC6 A;  3IVD A;  5EQV A;  2WDD A;  3THN A;  4ZX2 A;  2BCD A;  2CWW A;  2IAE C;  2KLN A;  3DJA A;  1XM7 A;  5IOH A;  1T70 A;  1TCO A;  3K7W C;  1II7 A;  3DOR A;  4HYL A;  4G9J A;  4H2G A;  4HD0 A;  3OIZ A;  3OIR A;  4FBK A;  3QFN A;  2DXL A;  4JA7 A;  5J28 A;  3H61 A;  3GVK A;  5EUZ A;  1TIL B;  3AGD A;  3D3U A;  2ZOA A;  4H2I A;  1T6R A;  4LAC C;  1TH8 B;  1HF2 A;  3ZXN A;  1Z2W A;  3V97 A;  3VSE A;  4KBP A;  4ORA A;  1S3M A;  1HP1 A;  1QFC A;  2AHD A;  4MOY A;  3ZU0 A;  2YVT A;  3K7V C;  5DNY A;  4AE2 A;  4O4K A;  5JPF A;  3GVL A;  3NY7 A;  3QFO A;  1JK7 A;  1W24 A;  2DXN A;  3JU4 A;  3RQZ A;  3T1I A;  2USH A;  4J6O A;  3QG5 C;  3F43 A;  3GVE A;  5EUU A;  4FBQ A;  5EUS A;  4O43 A;  3GK7 A;  4TUG A;  4ZVZ A;  4XS5 A;  5JJT A;  2Z1A A;  3V4Y A;  4LTY A;  1S95 A;  1NNW A;  2XMO A;  3V8V A;  4IL1 A;  4V0W A;  4FCX A;  1SU1 A;  3H69 A;  3P71 C;  1H4Z A;  1H4X A;  4ORC A;  4JC0 A;  5EZB A;  4H1S A;  4HIZ A;  3H60 A;  3H62 B;  1WXX A;  4AEJ A;  1QHW A;  2BQ8 X;  4UT2 A;  3MGL A;  4LU9 A;  5F3W A;  4M0V A;  1H4Y A;  4DGH A;  1AUZ A;  2O8G A;  4I5N C;  1FJM A;  3QFM A;  1J7X A;  2Z72 A;  1N6E A;  4TUI A;  1USH A;  2JOG A;  1N6D A;  3EGG A;  4L8K A;  1MF8 A;  1IT6 A;  3FLO A;  4FBW A;  2YEQ A;  2WDE A;  4V0V A;  2IE4 C;  2R17 A;  3IHA A;  2DFJ A;  5JPE A;  2Q8U A;  2QJC A;  3IB7 A;  4DHL A;  4MOV A;  1OI8 A;  3DSC A;  1K32 A;  3HVQ A;  4NZV A;  1AUI A;  3GMF A;  4MP0 A;  1TID B;  2WDC A;  1HPU A;  2HYP A;  2QFR A;  2Z06 A;  3H68 A;  1N6F A;  1S3L A;  4IYP C;  2A22 A;  1V0F A;  2VY9 A;  3K50 A;  3MOG A;  4UT3 B;  5GTU A;  2HYO A;  1XZW A;  1FC9 A;  3IHB A;  1S70 A;  1Z2X A;  2KA5 A;  2BDX A;  1BUZ A;  3LLO A;  4DGF A;  1WAR A;  3LKL A;  3C0K A;  4ORB A;  3KBP A;  4DMG A;  3DW8 C;  2KKN A;  4V0X A;  2OAS A;  1G5B A;  4F0Z A;  1FCF A;  1HO5 A;  3RL3 A;  2QFP A;  1FC7 A;  3QDQ A;  2IE3 C;  3H67 A;  5B8I A;  1SBO A;  2GJU A;  1U32 A;  5HPE A;  2ZBM A;  4JA9 A;  1KBP A;  3E7A A;  2B78 A;  2CV9 A;  3GHF A;  1BPL A;  1M63 A;  1WAO 1;  3EGH A;  1VC1 A;  3IF5 A;  3THO B;  2NPP C;  2RRL A;  3ZTV A;  2WDF A;  1V73 A;  1S3N A;  3CK2 A;  3DSD A;  1WXW A;  3IH9 A;  5EUX A;  3IVE A;  3RL4 A;  4DSY A;  3T6O A;  3IB8 A;  3H63 A;  1S8E A;  3AV0 A;  3QFK A;  3C9F A;  4H1Y P;  3D03 A;  2NXF A;  4B2O A;  4I5L C;  3N5U A;  4L1C A;  4H2F A;  3GVJ A;  4OR9 A;  5C1V A;  4O24 A;  3RL5 A;  1UTE A;  4WWL A;  4UT3 A;  1UF3 A;  2HY1 A;  3EH7 A;  1THN B;  3LDF A;  3ICF A;  2ZO9 B;  2P6B A;  3ZTB A;  3H66 A;  4YKE A;  4O5G A;  1OID A;  3AGE A;  3E0J A;  2NYL C;  3H64 A;  4GHN A;  2NYM C;  3LL8 A;  3E7B A;  3AUZ A;  3C5W C;  3TGH A;  1V0E A;  1OIE A;  4UWQ A;  3DUP A;  2O8A A;  5INB A;  4QTP A;  4H2B A;  4Q7F A;  5EUW A;  3PSO A;  1T71 A;  3IH8 A;  4XPN A;  3JYF A; 
#chains in the Genus database with same CATH homology
 4DT2 A;  4KKZ A;  3FGA C;  3PSN A;  3IVD A;  1FC6 A;  3THN A;  5EQV A;  2WDD A;  4ZX2 A;  2BCD A;  2IAE C;  3DJA A;  1XM7 A;  5IOH A;  1T70 A;  1TCO A;  3K7W C;  1II7 A;  3DOR A;  4G9J A;  4H2G A;  4HD0 A;  4FBK A;  3QFN A;  2DXL A;  4JA7 A;  5J28 A;  3H61 A;  2ZOA A;  4H2I A;  4LAC C;  5B8I A;  4KBP A;  1Z2W A;  4ORA A;  4B2O A;  5F3W A;  1S3M A;  1HP1 A;  1QFC A;  2AHD A;  4MOY A;  3ZU0 A;  2YVT A;  3K7V C;  5DNY A;  4O4K A;  5JPF A;  3QFO A;  1JK7 A;  1W24 A;  2DXN A;  3RQZ A;  3T1I A;  2USH A;  4J6O A;  3QG5 C;  3GVE A;  4FBQ A;  4O43 A;  4TUG A;  4ZVZ A;  5JJT A;  2Z1A A;  3V4Y A;  4LTY A;  1S95 A;  1NNW A;  2XMO A;  4IL1 A;  4V0W A;  4FCX A;  1SU1 A;  3H69 A;  3P71 C;  4ORC A;  4JC0 A;  4H1S A;  3H60 A;  3H62 B;  4AEJ A;  1QHW A;  2BQ8 X;  4UT2 A;  4LU9 A;  4M0V A;  2O8G A;  4I5N C;  1FJM A;  3QFM A;  1J7X A;  2Z72 A;  1N6E A;  4TUI A;  1USH A;  2JOG A;  1N6D A;  3EGG A;  4L8K A;  1MF8 A;  1IT6 A;  3FLO A;  4FBW A;  2YEQ A;  2WDE A;  4V0V A;  2IE4 C;  2R17 A;  2DFJ A;  2Q8U A;  2QJC A;  3IB7 A;  4DHL A;  4MOV A;  1OI8 A;  3DSC A;  1K32 A;  3HVQ A;  4NZV A;  1AUI A;  3GMF A;  4MP0 A;  2WDC A;  2Z06 A;  1HPU A;  2HYP A;  2QFR A;  3H68 A;  4IYP C;  1N6F A;  1S3L A;  2A22 A;  5GTU A;  3K50 A;  3MOG A;  4UT3 B;  2HYO A;  1XZW A;  1FC9 A;  1S70 A;  1Z2X A;  2BDX A;  1WAR A;  4ORB A;  3KBP A;  3DW8 C;  2KKN A;  4V0X A;  4F0Z A;  1G5B A;  1FCF A;  1HO5 A;  3RL3 A;  2QFP A;  1FC7 A;  2IE3 C;  3H67 A;  2GJU A;  1U32 A;  5HPE A;  2ZBM A;  4JA9 A;  1KBP A;  3E7A A;  2CV9 A;  3GHF A;  1WAO 1;  1BPL A;  1M63 A;  3EGH A;  3THO B;  2NPP C;  2RRL A;  3ZTV A;  2WDF A;  1V73 A;  1S3N A;  3CK2 A;  3DSD A;  3IVE A;  3RL4 A;  4DSY A;  3IB8 A;  3H63 A;  1S8E A;  3AV0 A;  3QFK A;  3C9F A;  4H1Y P;  3D03 A;  2NXF A;  4I5L C;  3N5U A;  4L1C A;  4H2F A;  4OR9 A;  5C1V A;  4O24 A;  3RL5 A;  1UTE A;  4WWL A;  4UT3 A;  1UF3 A;  2HY1 A;  3ICF A;  2ZO9 B;  2P6B A;  3H66 A;  4YKE A;  4O5G A;  1OID A;  3E0J A;  2NYL C;  3H64 A;  4GHN A;  2NYM C;  3LL8 A;  3E7B A;  3AUZ A;  3C5W C;  3TGH A;  1OIE A;  4UWQ A;  3DUP A;  2O8A A;  5INB A;  4H2B A;  4Q7F A;  4AE2 A;  3PSO A;  1T71 A;  5JPE A;  4XPN A;  3JYF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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