2DXLA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxlA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxlA01
3D03A 2ZO9B 2DXLA 2ZOAA 2DXNA
chains in the Genus database with same CATH superfamily
5EUWA 3D03A 3C9FA 3V8VA 4B2OA 4QTPA 3KBPA 2BCDA 2CWWA 1N6DA 4ORAA 4V0WA 3V4YA 3GVJA 1N6FA 4MOYA 4ORCA 3FGAC 1T71A 1T70A 1TIDB 1BUZA 2O8AA 1FJMA 4FBQA 4UWQA 5EQVA 5JPEA 3H62B 3CK2A 3ZU0A 4FBKA 1S95A 4NZVA 2Q8UA 3H60A 2WDFA 3PSNA 3H64A 5GTUA 4DHLA 2HYPA 1BPLA 3FLOA 3H69A 1J7XA 4MP0A 4H2FA 3QFKA 3AGEA 2O8GA 3K7WC 4OR9A 2YVTA 1QFCA 2QJCA 2QFPA 1FC9A 4J6OA 2Z1AA 4H1YP 5EUSA 3T1IA 3ZTVA 3IVDA 1UTEA 3AGDA 2B78A 4JC0A 1VC1A 3DUPA 2Z72A 2KLNA 3E0JA 3EGHA 3TGHA 3GVEA 2QFRA 4I5NC 4ORBA 3MOGA 2DFJA 4G9JA 3LDFA 4L1CA 3H63A 4FCXA 4O4KA 3THOB 4M0VA 2NXFA 4H2IA 4ZVZA 3DSCA 3C0KA 2NYLC 4V0VA 1HP1A 3AV0A 3QFOA 2IAEC 4AEJA 2BDXA 3F43A 3EGGA 3RL4A 3GHFA 3IF5A 1M63A 2ZOAA 3HVQA 3ICFA 3GVKA 3V97A 1OI8A 4GHNA 1SBOA 1XM7A 3DORA 4TUGA 4HD0A 1S3LA 1W24A 4JA7A 4DSYA 1QHWA 1OIDA 2XMOA 4LTYA 3ZXNA 2GJUA 1NNWA 3AUZA 4H2BA 3IHAA 3IB8A 1HF2A 1TILB 3RQZA 1H4ZA 1WXWA 5EZBA 1XZWA 3D3UA 2KA5A 3ZTBA 3DW8C 2DXLA 1FCFA 3IH9A 2HYOA 1AUZA 4JA9A 4O5GA 5C1VA 5J28A 1IT6A 3K7VC 2VY9A 4I5LC 3LL8A 1T6RA 3JYFA 1Z2WA 1USHA 1FC7A 3EH7A 3OIRA 3H61A 1OIEA 3DJAA 4UT3A 1TH8B 3LKLA 4DMGA 3T6OA 1KBPA 3RL5A 5JPFA 3OIZA 5EUUA 2NPPC 3H67A 3QFNA 5IOHA 1U32A 3QDQA 3GK7A 4Q7FA 3LLOA 2A22A 3IVEA 1UF3A 4FBWA 3P71C 2BQ8X 3GMFA 5F3WA 1N6EA 1V0FA 1K32A 1HO5A 3MGLA 4HIZA 5EUZA 2AHDA 4O43A 4XPNA 3DSDA 1H4YA 1II7A 1FC6A 1WARA 2OASA 1V73A 4DGHA 2HY1A 2IE3C 2R17A 3N5UA 4H2GA 4IL1A 1TCOA 2ZO9B 1MF8A 4YKEA 3QG5C 2IE4C 3IH8A 4V0XA 1S70A 4HYLA 1V0EA 1JK7A 3IB7A 4KBPA 4DGFA 2YEQA 4DT2A 5HPEA 5JJTA 5B8IA 4ZX2A 3JU4A 2USHA 2WDDA 3K50A 3VSEA 1G5BA 3H68A 4UT2A 2AS0A 3QFMA 5DNYA 1S3MA 2WDEA 1AUIA 1WAO1 1Z2XA 2KKNA 3IHBA 5EUXA 5INBA 4MOVA 4WWLA 3C5WC 3H66A 3E7BA 3E7AA 2NYMC 2WDCA 2JOGA 2Z06A 3RL3A 1H4XA 3GVLA 4O24A 2RRLA 4UT3B 1THNB 1S8EA 4LACC 4LU9A 4F0ZA 3THNA 4H1SA 1WXXA 4L8KA 4XS5A 2ZBMA 4KKZA 1HPUA 3NY7A 3PSOA 4TUIA 2DXNA 2P6BA 1S3NA 4AE2A 4IYPC 2CV9A 1SU1A
chains in the Genus database with same CATH topology
3D03A 3C9FA 4B2OA 3KBPA 2BCDA 1N6DA 4ORAA 4V0WA 1N6FA 4MOYA 4ORCA 3FGAC 1T71A 1T70A 4UWQA 4FBQA 2O8AA 1FJMA 5EQVA 5JPEA 3H62B 3CK2A 3ZU0A 4FBKA 1S95A 4NZVA 2Q8UA 3H60A 2WDFA 3PSNA 3H64A 5GTUA 4DHLA 2HYPA 1BPLA 3FLOA 3H69A 1J7XA 4MP0A 4H2FA 3QFKA 2O8GA 3K7WC 4OR9A 2YVTA 1QFCA 2QJCA 2QFPA 1FC9A 4J6OA 2Z1AA 4H1YP 3T1IA 3ZTVA 3IVDA 1UTEA 3E0JA 4JC0A 2Z72A 3DUPA 3EGHA 3TGHA 3GVEA 2QFRA 4I5NC 4ORBA 3MOGA 2DFJA 4G9JA 4L1CA 3H63A 4FCXA 4O4KA 3THOB 4M0VA 2NXFA 4H2IA 4ZVZA 3DSCA 2NYLC 4V0VA 1HP1A 3AV0A 3QFOA 2IAEC 4AEJA 2BDXA 3EGGA 3RL4A 3GHFA 1M63A 2ZOAA 3HVQA 3ICFA 1XM7A 1OI8A 4GHNA 3DORA 4TUGA 4HD0A 1S3LA 1W24A 4JA7A 4DSYA 1QHWA 1OIDA 2XMOA 4LTYA 2GJUA 1NNWA 3AUZA 4H2BA 3IB8A 3RQZA 1XZWA 3DW8C 2DXLA 1FCFA 2HYOA 4JA9A 4O5GA 5C1VA 5J28A 1IT6A 3K7VC 4I5LC 3LL8A 3JYFA 1Z2WA 1USHA 1FC7A 3H61A 1OIEA 3DJAA 4UT3A 1KBPA 3RL5A 5JPFA 2NPPC 3H67A 3QFNA 5IOHA 1U32A 4Q7FA 2A22A 3IVEA 1UF3A 4FBWA 3P71C 2BQ8X 3GMFA 5F3WA 1N6EA 1K32A 1HO5A 2AHDA 4O43A 3DSDA 4XPNA 1II7A 1FC6A 1WARA 2HY1A 1V73A 2R17A 2IE3C 3N5UA 4H2GA 4IL1A 4YKEA 1TCOA 2ZO9B 1MF8A 3QG5C 2IE4C 4V0XA 1S70A 1JK7A 3IB7A 4KBPA 2YEQA 4DT2A 5HPEA 5JJTA 5B8IA 4ZX2A 2USHA 3H68A 2WDDA 3K50A 4UT2A 1G5BA 3V4YA 5DNYA 3QFMA 1S3MA 2WDEA 1AUIA 1WAO1 1Z2XA 2KKNA 5INBA 4MOVA 4WWLA 3C5WC 3H66A 3E7BA 3E7AA 2NYMC 2WDCA 2JOGA 2Z06A 3RL3A 4O24A 2RRLA 4UT3B 1S8EA 4LACC 4LU9A 4F0ZA 3THNA 4H1SA 4L8KA 2ZBMA 4KKZA 1HPUA 3PSOA 4TUIA 2DXNA 2P6BA 1S3NA 4AE2A 4IYPC 2CV9A 1SU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D03 A;  2ZO9 B;  2DXL A;  2ZOA A;  2DXN A; 
#chains in the Genus database with same CATH topology
 5EUW A;  3D03 A;  3C9F A;  3V8V A;  4B2O A;  4QTP A;  3KBP A;  2BCD A;  2CWW A;  1N6D A;  4ORA A;  4V0W A;  3V4Y A;  3GVJ A;  1N6F A;  4MOY A;  4ORC A;  3FGA C;  1T71 A;  1T70 A;  1TID B;  1BUZ A;  2O8A A;  1FJM A;  4FBQ A;  4UWQ A;  5EQV A;  5JPE A;  3H62 B;  3CK2 A;  3ZU0 A;  4FBK A;  1S95 A;  4NZV A;  2Q8U A;  3H60 A;  2WDF A;  3PSN A;  3H64 A;  5GTU A;  4DHL A;  2HYP A;  1BPL A;  3FLO A;  3H69 A;  1J7X A;  4MP0 A;  4H2F A;  3QFK A;  3AGE A;  2O8G A;  3K7W C;  4OR9 A;  2YVT A;  1QFC A;  2QJC A;  2QFP A;  1FC9 A;  4J6O A;  2Z1A A;  4H1Y P;  5EUS A;  3T1I A;  3ZTV A;  3IVD A;  1UTE A;  3AGD A;  2B78 A;  4JC0 A;  1VC1 A;  3DUP A;  2Z72 A;  2KLN A;  3E0J A;  3EGH A;  3TGH A;  3GVE A;  2QFR A;  4I5N C;  4ORB A;  3MOG A;  2DFJ A;  4G9J A;  3LDF A;  4L1C A;  3H63 A;  4FCX A;  4O4K A;  3THO B;  4M0V A;  2NXF A;  4H2I A;  4ZVZ A;  3DSC A;  3C0K A;  2NYL C;  4V0V A;  1HP1 A;  3AV0 A;  3QFO A;  2IAE C;  4AEJ A;  2BDX A;  3F43 A;  3EGG A;  3RL4 A;  3GHF A;  3IF5 A;  1M63 A;  2ZOA A;  3HVQ A;  3ICF A;  3GVK A;  3V97 A;  1OI8 A;  4GHN A;  1SBO A;  1XM7 A;  3DOR A;  4TUG A;  4HD0 A;  1S3L A;  1W24 A;  4JA7 A;  4DSY A;  1QHW A;  1OID A;  2XMO A;  4LTY A;  3ZXN A;  2GJU A;  1NNW A;  3AUZ A;  4H2B A;  3IHA A;  3IB8 A;  1HF2 A;  1TIL B;  3RQZ A;  1H4Z A;  1WXW A;  5EZB A;  1XZW A;  3D3U A;  2KA5 A;  3ZTB A;  3DW8 C;  2DXL A;  1FCF A;  3IH9 A;  2HYO A;  1AUZ A;  4JA9 A;  4O5G A;  5C1V A;  5J28 A;  1IT6 A;  3K7V C;  2VY9 A;  4I5L C;  3LL8 A;  1T6R A;  3JYF A;  1Z2W A;  1USH A;  1FC7 A;  3EH7 A;  3OIR A;  3H61 A;  1OIE A;  3DJA A;  4UT3 A;  1TH8 B;  3LKL A;  4DMG A;  3T6O A;  1KBP A;  3RL5 A;  5JPF A;  3OIZ A;  5EUU A;  2NPP C;  3H67 A;  3QFN A;  5IOH A;  1U32 A;  3QDQ A;  3GK7 A;  4Q7F A;  3LLO A;  2A22 A;  3IVE A;  1UF3 A;  4FBW A;  3P71 C;  2BQ8 X;  3GMF A;  5F3W A;  1N6E A;  1V0F A;  1K32 A;  1HO5 A;  3MGL A;  4HIZ A;  5EUZ A;  2AHD A;  4O43 A;  4XPN A;  3DSD A;  1H4Y A;  1II7 A;  1FC6 A;  1WAR A;  2OAS A;  1V73 A;  4DGH A;  2HY1 A;  2IE3 C;  2R17 A;  3N5U A;  4H2G A;  4IL1 A;  1TCO A;  2ZO9 B;  1MF8 A;  4YKE A;  3QG5 C;  2IE4 C;  3IH8 A;  4V0X A;  1S70 A;  4HYL A;  1V0E A;  1JK7 A;  3IB7 A;  4KBP A;  4DGF A;  2YEQ A;  4DT2 A;  5HPE A;  5JJT A;  5B8I A;  4ZX2 A;  3JU4 A;  2USH A;  2WDD A;  3K50 A;  3VSE A;  1G5B A;  3H68 A;  4UT2 A;  2AS0 A;  3QFM A;  5DNY A;  1S3M A;  2WDE A;  1AUI A;  1WAO 1;  1Z2X A;  2KKN A;  3IHB A;  5EUX A;  5INB A;  4MOV A;  4WWL A;  3C5W C;  3H66 A;  3E7B A;  3E7A A;  2NYM C;  2WDC A;  2JOG A;  2Z06 A;  3RL3 A;  1H4X A;  3GVL A;  4O24 A;  2RRL A;  4UT3 B;  1THN B;  1S8E A;  4LAC C;  4LU9 A;  4F0Z A;  3THN A;  4H1S A;  1WXX A;  4L8K A;  4XS5 A;  2ZBM A;  4KKZ A;  1HPU A;  3NY7 A;  3PSO A;  4TUI A;  2DXN A;  2P6B A;  1S3N A;  4AE2 A;  4IYP C;  2CV9 A;  1SU1 A; 
#chains in the Genus database with same CATH homology
 3D03 A;  3C9F A;  4B2O A;  3KBP A;  2BCD A;  1N6D A;  4ORA A;  4V0W A;  1N6F A;  4MOY A;  4ORC A;  3FGA C;  1T71 A;  1T70 A;  4UWQ A;  4FBQ A;  2O8A A;  1FJM A;  5EQV A;  5JPE A;  3H62 B;  3CK2 A;  3ZU0 A;  4FBK A;  1S95 A;  4NZV A;  2Q8U A;  3H60 A;  2WDF A;  3PSN A;  3H64 A;  5GTU A;  4DHL A;  2HYP A;  1BPL A;  3FLO A;  3H69 A;  1J7X A;  4MP0 A;  4H2F A;  3QFK A;  2O8G A;  3K7W C;  4OR9 A;  2YVT A;  1QFC A;  2QJC A;  2QFP A;  1FC9 A;  4J6O A;  2Z1A A;  4H1Y P;  3T1I A;  3ZTV A;  3IVD A;  1UTE A;  3E0J A;  4JC0 A;  2Z72 A;  3DUP A;  3EGH A;  3TGH A;  3GVE A;  2QFR A;  4I5N C;  4ORB A;  3MOG A;  2DFJ A;  4G9J A;  4L1C A;  3H63 A;  4FCX A;  4O4K A;  3THO B;  4M0V A;  2NXF A;  4H2I A;  4ZVZ A;  3DSC A;  2NYL C;  4V0V A;  1HP1 A;  3AV0 A;  3QFO A;  2IAE C;  4AEJ A;  2BDX A;  3EGG A;  3RL4 A;  3GHF A;  1M63 A;  2ZOA A;  3HVQ A;  3ICF A;  1XM7 A;  1OI8 A;  4GHN A;  3DOR A;  4TUG A;  4HD0 A;  1S3L A;  1W24 A;  4JA7 A;  4DSY A;  1QHW A;  1OID A;  2XMO A;  4LTY A;  2GJU A;  1NNW A;  3AUZ A;  4H2B A;  3IB8 A;  3RQZ A;  1XZW A;  3DW8 C;  2DXL A;  1FCF A;  2HYO A;  4JA9 A;  4O5G A;  5C1V A;  5J28 A;  1IT6 A;  3K7V C;  4I5L C;  3LL8 A;  3JYF A;  1Z2W A;  1USH A;  1FC7 A;  3H61 A;  1OIE A;  3DJA A;  4UT3 A;  1KBP A;  3RL5 A;  5JPF A;  2NPP C;  3H67 A;  3QFN A;  5IOH A;  1U32 A;  4Q7F A;  2A22 A;  3IVE A;  1UF3 A;  4FBW A;  3P71 C;  2BQ8 X;  3GMF A;  5F3W A;  1N6E A;  1K32 A;  1HO5 A;  2AHD A;  4O43 A;  3DSD A;  4XPN A;  1II7 A;  1FC6 A;  1WAR A;  2HY1 A;  1V73 A;  2R17 A;  2IE3 C;  3N5U A;  4H2G A;  4IL1 A;  4YKE A;  1TCO A;  2ZO9 B;  1MF8 A;  3QG5 C;  2IE4 C;  4V0X A;  1S70 A;  1JK7 A;  3IB7 A;  4KBP A;  2YEQ A;  4DT2 A;  5HPE A;  5JJT A;  5B8I A;  4ZX2 A;  2USH A;  3H68 A;  2WDD A;  3K50 A;  4UT2 A;  1G5B A;  3V4Y A;  5DNY A;  3QFM A;  1S3M A;  2WDE A;  1AUI A;  1WAO 1;  1Z2X A;  2KKN A;  5INB A;  4MOV A;  4WWL A;  3C5W C;  3H66 A;  3E7B A;  3E7A A;  2NYM C;  2WDC A;  2JOG A;  2Z06 A;  3RL3 A;  4O24 A;  2RRL A;  4UT3 B;  1S8E A;  4LAC C;  4LU9 A;  4F0Z A;  3THN A;  4H1S A;  4L8K A;  2ZBM A;  4KKZ A;  1HPU A;  3PSO A;  4TUI A;  2DXN A;  2P6B A;  1S3N A;  4AE2 A;  4IYP C;  2CV9 A;  1SU1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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