2DXLA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Phosphohydrolase
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxlA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxlA01
3D03A 2DXNA 2DXLA 2ZO9B 2ZOAA
chains in the Genus database with same CATH superfamily
3V4YA 4UT2A 3GK7A 3H62B 2AS0A 4ORBA 1VC1A 4DSYA 3DUPA 4XS5A 4OR9A 4J6OA 1S3MA 1S95A 4XPNA 1XZWA 1TCOA 3LDFA 3LL8A 1T70A 2VY9A 1WAO1 2NYLC 4NZVA 1WXWA 4UT3B 4H1SA 3MGLA 4F0ZA 5DNYA 4DGFA 3IVDA 4HD0A 1V0FA 1H4ZA 2KLNA 4DMGA 1H4XA 3RQZA 4GHNA 1N6FA 3IH9A 1QHWA 2P6BA 3H64A 4JC0A 1BUZA 2YEQA 2Z06A 2NXFA 3E0JA 3HVQA 3H67A 5EUSA 1QFCA 4UWQA 3C9FA 4ZVZA 1N6DA 3C5WC 5C1VA 1TIDB 3GVKA 4MP0A 4AEJA 2DXNA 4ORAA 1AUZA 4ZX2A 3FLOA 3K7WC 1N6EA 3EH7A 3H68A 4AE2A 3H61A 3V97A 4TUGA 2Z1AA 3JU4A 1BPLA 1W24A 2AHDA 3D3UA 3JYFA 4HYLA 3E7BA 3GVEA 5GTUA 1T6RA 3IH8A 4G9JA 2WDCA 4UT3A 2BDXA 1T71A 3QFNA 3P71C 3THOB 4LU9A 5B8IA 1HF2A 3IF5A 4FBKA 3OIRA 4LTYA 3RL4A 3QFKA 4O43A 2KKNA 3V8VA 1Z2WA 2JOGA 3DW8C 4M0VA 2RRLA 3QFMA 3ZXNA 3K50A 3IHAA 4V0WA 3OIZA 3IVEA 1S3NA 4L1CA 2WDEA 4MOVA 3H60A 3PSOA 2KA5A 1FC7A 5INBA 1JK7A 2QJCA 3H66A 1THNB 3AGEA 1FJMA 3E7AA 3EGHA 3QG5C 1IT6A 1Z2XA 4O4KA 2NYMC 3EGGA 4FBWA 4DHLA 2WDFA 4DGHA 2WDDA 4I5LC 5JJTA 1HPUA 3LLOA 2CV9A 1USHA 2Z72A 3D03A 4V0XA 4V0VA 1SBOA 4YKEA 5EUUA 2XMOA 2ZBMA 3ZTBA 1H4YA 3MOGA 4H2BA 1S70A 2ZOAA 4MOYA 1V0EA 2B78A 1TILB 5EZBA 4H2GA 4IYPC 1J7XA 1U32A 3IB7A 4DT2A 3PSNA 1II7A 2IE3C 5IOHA 1HP1A 3VSEA 4HIZA 5EUZA 4I5NC 1KBPA 3QDQA 1OIEA 2O8AA 3AV0A 5J28A 1AUIA 4TUIA 3ICFA 2BQ8X 2OASA 1OI8A 1SU1A 4H2IA 5F3WA 3GMFA 1NNWA 1TH8B 3DSDA 3AGDA 2GJUA 2BCDA 5JPEA 4JA7A 3DSCA 2QFPA 3CK2A 1OIDA 3IB8A 4IL1A 5EQVA 4ORCA 2ZO9B 4H2FA 2HYPA 2CWWA 4LACC 1FCFA 4FCXA 3TGHA 3NY7A 1XM7A 3AUZA 3H63A 4KBPA 3F43A 2USHA 1K32A 3QFOA 1S3LA 3DJAA 3IHBA 4QTPA 1G5BA 3K7VC 1MF8A 5HPEA 3RL5A 2Q8UA 5JPFA 3GVJA 1M63A 4O24A 3T1IA 4KKZA 2YVTA 2IE4C 4L8KA 2HYOA 3GHFA 2NPPC 4JA9A 1HO5A 2R17A 2HY1A 1V73A 3LKLA 3N5UA 3T6OA 2A22A 1FC6A 3H69A 2QFRA 4O5GA 3C0KA 3ZTVA 3DORA 5EUXA 4WWLA 1WXXA 3RL3A 3THNA 5EUWA 2O8GA 4FBQA 1S8EA 3ZU0A 1WARA 4B2OA 3KBPA 4H1YP 2DFJA 1UTEA 1FC9A 1UF3A 2IAEC 3GVLA 3FGAC 2DXLA 4Q7FA
chains in the Genus database with same CATH topology
3V4YA 4UT2A 3H62B 4ORBA 4DSYA 3DUPA 4OR9A 4J6OA 1S3MA 1S95A 4XPNA 1XZWA 1TCOA 3LL8A 1T70A 1WAO1 2NYLC 4NZVA 4F0ZA 4UT3B 4H1SA 5DNYA 3IVDA 4HD0A 3RQZA 4GHNA 1N6FA 1QHWA 2P6BA 3H64A 4JC0A 2YEQA 2Z06A 3E0JA 2NXFA 3HVQA 4UWQA 3H67A 1QFCA 3C9FA 4ZVZA 1N6DA 3C5WC 5C1VA 4MP0A 4AEJA 2DXNA 4ORAA 4ZX2A 3FLOA 3K7WC 1N6EA 3H68A 4AE2A 3H61A 4TUGA 2Z1AA 2DXLA 1BPLA 1W24A 2AHDA 3JYFA 5GTUA 3E7BA 3GVEA 4G9JA 2WDCA 4UT3A 2BDXA 1T71A 3QFNA 3P71C 3THOB 4LU9A 5B8IA 4FBKA 4LTYA 3RL4A 3QFKA 4O43A 2KKNA 2JOGA 1Z2WA 3DW8C 4M0VA 2RRLA 3QFMA 3K50A 4V0WA 3IVEA 1S3NA 4L1CA 2WDEA 4MOVA 3H60A 3PSOA 5INBA 1FC7A 1JK7A 2QJCA 3H66A 1FJMA 3EGHA 3E7AA 3QG5C 4O4KA 1IT6A 1Z2XA 2NYMC 3EGGA 4FBWA 4DHLA 2WDFA 2WDDA 4I5LC 5JJTA 1HPUA 2CV9A 1USHA 2Z72A 3D03A 4V0XA 4V0VA 4YKEA 2XMOA 2ZBMA 3MOGA 4H2BA 1S70A 2ZOAA 4MOYA 4H2GA 4IYPC 1J7XA 1U32A 3IB7A 4DT2A 3PSNA 1II7A 2IE3C 5IOHA 1HP1A 4I5NC 1KBPA 2O8AA 1OIEA 3AV0A 5J28A 1AUIA 4TUIA 3ICFA 2BQ8X 1SU1A 1OI8A 4H2IA 5F3WA 3GMFA 1NNWA 3DSDA 2GJUA 2BCDA 5JPEA 4JA7A 3DSCA 2QFPA 3CK2A 1OIDA 3IB8A 4IL1A 5EQVA 4ORCA 2ZO9B 4H2FA 2HYPA 4LACC 1FCFA 4FCXA 3TGHA 3AUZA 1XM7A 3H63A 4KBPA 2USHA 1K32A 3QFOA 1S3LA 3DJAA 3K7VC 1G5BA 1MF8A 5HPEA 3RL5A 2Q8UA 5JPFA 4O24A 1M63A 3T1IA 4KKZA 2YVTA 2IE4C 4L8KA 2HYOA 3GHFA 2NPPC 4JA9A 2R17A 2HY1A 1V73A 3N5UA 2A22A 1FC6A 3H69A 2QFRA 4O5GA 3ZTVA 3DORA 4WWLA 3RL3A 3THNA 2O8GA 4FBQA 1S8EA 3ZU0A 1WARA 4B2OA 3KBPA 4H1YP 2DFJA 1UTEA 1FC9A 1UF3A 2IAEC 3FGAC 4Q7FA 1HO5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D03 A;  2DXN A;  2DXL A;  2ZO9 B;  2ZOA A; 
#chains in the Genus database with same CATH topology
 3V4Y A;  4UT2 A;  3GK7 A;  3H62 B;  2AS0 A;  4ORB A;  1VC1 A;  4DSY A;  3DUP A;  4XS5 A;  4OR9 A;  4J6O A;  1S3M A;  1S95 A;  4XPN A;  1XZW A;  1TCO A;  3LDF A;  3LL8 A;  1T70 A;  2VY9 A;  1WAO 1;  2NYL C;  4NZV A;  1WXW A;  4UT3 B;  4H1S A;  3MGL A;  4F0Z A;  5DNY A;  4DGF A;  3IVD A;  4HD0 A;  1V0F A;  1H4Z A;  2KLN A;  4DMG A;  1H4X A;  3RQZ A;  4GHN A;  1N6F A;  3IH9 A;  1QHW A;  2P6B A;  3H64 A;  4JC0 A;  1BUZ A;  2YEQ A;  2Z06 A;  2NXF A;  3E0J A;  3HVQ A;  3H67 A;  5EUS A;  1QFC A;  4UWQ A;  3C9F A;  4ZVZ A;  1N6D A;  3C5W C;  5C1V A;  1TID B;  3GVK A;  4MP0 A;  4AEJ A;  2DXN A;  4ORA A;  1AUZ A;  4ZX2 A;  3FLO A;  3K7W C;  1N6E A;  3EH7 A;  3H68 A;  4AE2 A;  3H61 A;  3V97 A;  4TUG A;  2Z1A A;  3JU4 A;  1BPL A;  1W24 A;  2AHD A;  3D3U A;  3JYF A;  4HYL A;  3E7B A;  3GVE A;  5GTU A;  1T6R A;  3IH8 A;  4G9J A;  2WDC A;  4UT3 A;  2BDX A;  1T71 A;  3QFN A;  3P71 C;  3THO B;  4LU9 A;  5B8I A;  1HF2 A;  3IF5 A;  4FBK A;  3OIR A;  4LTY A;  3RL4 A;  3QFK A;  4O43 A;  2KKN A;  3V8V A;  1Z2W A;  2JOG A;  3DW8 C;  4M0V A;  2RRL A;  3QFM A;  3ZXN A;  3K50 A;  3IHA A;  4V0W A;  3OIZ A;  3IVE A;  1S3N A;  4L1C A;  2WDE A;  4MOV A;  3H60 A;  3PSO A;  2KA5 A;  1FC7 A;  5INB A;  1JK7 A;  2QJC A;  3H66 A;  1THN B;  3AGE A;  1FJM A;  3E7A A;  3EGH A;  3QG5 C;  1IT6 A;  1Z2X A;  4O4K A;  2NYM C;  3EGG A;  4FBW A;  4DHL A;  2WDF A;  4DGH A;  2WDD A;  4I5L C;  5JJT A;  1HPU A;  3LLO A;  2CV9 A;  1USH A;  2Z72 A;  3D03 A;  4V0X A;  4V0V A;  1SBO A;  4YKE A;  5EUU A;  2XMO A;  2ZBM A;  3ZTB A;  1H4Y A;  3MOG A;  4H2B A;  1S70 A;  2ZOA A;  4MOY A;  1V0E A;  2B78 A;  1TIL B;  5EZB A;  4H2G A;  4IYP C;  1J7X A;  1U32 A;  3IB7 A;  4DT2 A;  3PSN A;  1II7 A;  2IE3 C;  5IOH A;  1HP1 A;  3VSE A;  4HIZ A;  5EUZ A;  4I5N C;  1KBP A;  3QDQ A;  1OIE A;  2O8A A;  3AV0 A;  5J28 A;  1AUI A;  4TUI A;  3ICF A;  2BQ8 X;  2OAS A;  1OI8 A;  1SU1 A;  4H2I A;  5F3W A;  3GMF A;  1NNW A;  1TH8 B;  3DSD A;  3AGD A;  2GJU A;  2BCD A;  5JPE A;  4JA7 A;  3DSC A;  2QFP A;  3CK2 A;  1OID A;  3IB8 A;  4IL1 A;  5EQV A;  4ORC A;  2ZO9 B;  4H2F A;  2HYP A;  2CWW A;  4LAC C;  1FCF A;  4FCX A;  3TGH A;  3NY7 A;  1XM7 A;  3AUZ A;  3H63 A;  4KBP A;  3F43 A;  2USH A;  1K32 A;  3QFO A;  1S3L A;  3DJA A;  3IHB A;  4QTP A;  1G5B A;  3K7V C;  1MF8 A;  5HPE A;  3RL5 A;  2Q8U A;  5JPF A;  3GVJ A;  1M63 A;  4O24 A;  3T1I A;  4KKZ A;  2YVT A;  2IE4 C;  4L8K A;  2HYO A;  3GHF A;  2NPP C;  4JA9 A;  1HO5 A;  2R17 A;  2HY1 A;  1V73 A;  3LKL A;  3N5U A;  3T6O A;  2A22 A;  1FC6 A;  3H69 A;  2QFR A;  4O5G A;  3C0K A;  3ZTV A;  3DOR A;  5EUX A;  4WWL A;  1WXX A;  3RL3 A;  3THN A;  5EUW A;  2O8G A;  4FBQ A;  1S8E A;  3ZU0 A;  1WAR A;  4B2O A;  3KBP A;  4H1Y P;  2DFJ A;  1UTE A;  1FC9 A;  1UF3 A;  2IAE C;  3GVL A;  3FGA C;  2DXL A;  4Q7F A; 
#chains in the Genus database with same CATH homology
 3V4Y A;  4UT2 A;  3H62 B;  4ORB A;  4DSY A;  3DUP A;  4OR9 A;  4J6O A;  1S3M A;  1S95 A;  4XPN A;  1XZW A;  1TCO A;  3LL8 A;  1T70 A;  1WAO 1;  2NYL C;  4NZV A;  4F0Z A;  4UT3 B;  4H1S A;  5DNY A;  3IVD A;  4HD0 A;  3RQZ A;  4GHN A;  1N6F A;  1QHW A;  2P6B A;  3H64 A;  4JC0 A;  2YEQ A;  2Z06 A;  3E0J A;  2NXF A;  3HVQ A;  4UWQ A;  3H67 A;  1QFC A;  3C9F A;  4ZVZ A;  1N6D A;  3C5W C;  5C1V A;  4MP0 A;  4AEJ A;  2DXN A;  4ORA A;  4ZX2 A;  3FLO A;  3K7W C;  1N6E A;  3H68 A;  4AE2 A;  3H61 A;  4TUG A;  2Z1A A;  2DXL A;  1BPL A;  1W24 A;  2AHD A;  3JYF A;  5GTU A;  3E7B A;  3GVE A;  4G9J A;  2WDC A;  4UT3 A;  2BDX A;  1T71 A;  3QFN A;  3P71 C;  3THO B;  4LU9 A;  5B8I A;  4FBK A;  4LTY A;  3RL4 A;  3QFK A;  4O43 A;  2KKN A;  2JOG A;  1Z2W A;  3DW8 C;  4M0V A;  2RRL A;  3QFM A;  3K50 A;  4V0W A;  3IVE A;  1S3N A;  4L1C A;  2WDE A;  4MOV A;  3H60 A;  3PSO A;  5INB A;  1FC7 A;  1JK7 A;  2QJC A;  3H66 A;  1FJM A;  3EGH A;  3E7A A;  3QG5 C;  4O4K A;  1IT6 A;  1Z2X A;  2NYM C;  3EGG A;  4FBW A;  4DHL A;  2WDF A;  2WDD A;  4I5L C;  5JJT A;  1HPU A;  2CV9 A;  1USH A;  2Z72 A;  3D03 A;  4V0X A;  4V0V A;  4YKE A;  2XMO A;  2ZBM A;  3MOG A;  4H2B A;  1S70 A;  2ZOA A;  4MOY A;  4H2G A;  4IYP C;  1J7X A;  1U32 A;  3IB7 A;  4DT2 A;  3PSN A;  1II7 A;  2IE3 C;  5IOH A;  1HP1 A;  4I5N C;  1KBP A;  2O8A A;  1OIE A;  3AV0 A;  5J28 A;  1AUI A;  4TUI A;  3ICF A;  2BQ8 X;  1SU1 A;  1OI8 A;  4H2I A;  5F3W A;  3GMF A;  1NNW A;  3DSD A;  2GJU A;  2BCD A;  5JPE A;  4JA7 A;  3DSC A;  2QFP A;  3CK2 A;  1OID A;  3IB8 A;  4IL1 A;  5EQV A;  4ORC A;  2ZO9 B;  4H2F A;  2HYP A;  4LAC C;  1FCF A;  4FCX A;  3TGH A;  3AUZ A;  1XM7 A;  3H63 A;  4KBP A;  2USH A;  1K32 A;  3QFO A;  1S3L A;  3DJA A;  3K7V C;  1G5B A;  1MF8 A;  5HPE A;  3RL5 A;  2Q8U A;  5JPF A;  4O24 A;  1M63 A;  3T1I A;  4KKZ A;  2YVT A;  2IE4 C;  4L8K A;  2HYO A;  3GHF A;  2NPP C;  4JA9 A;  2R17 A;  2HY1 A;  1V73 A;  3N5U A;  2A22 A;  1FC6 A;  3H69 A;  2QFR A;  4O5G A;  3ZTV A;  3DOR A;  4WWL A;  3RL3 A;  3THN A;  2O8G A;  4FBQ A;  1S8E A;  3ZU0 A;  1WAR A;  4B2O A;  3KBP A;  4H1Y P;  2DFJ A;  1UTE A;  1FC9 A;  1UF3 A;  2IAE C;  3FGA C;  4Q7F A;  1HO5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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