2DXLA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
b'MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxlA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxlA01
2DXNA 3D03A 2ZOAA 2DXLA 2ZO9B
chains in the Genus database with same CATH superfamily
1FCFA 2DFJA 3K7VC 4G9JA 4UT2A 4KKZA 4L1CA 4QTPA 3D03A 3DW8C 3IB7A 4O43A 5INBA 3DUPA 3H67A 3IHAA 3DJAA 4HYLA 1T71A 1V73A 2NPPC 5DNYA 3GHFA 1USHA 4V0XA 3GVKA 1U32A 4FBWA 3E7AA 3IH8A 1WXWA 4WWLA 4DHLA 1QHWA 4H2IA 1T6RA 4MOYA 3OIRA 2WDFA 3MGLA 3CK2A 4LU9A 4ZVZA 2RRLA 2BDXA 3IVEA 3JU4A 2Z1AA 2JOGA 1SBOA 3QFNA 3RL5A 2KA5A 1M63A 3NY7A 1WXXA 1AUZA 3LL8A 1FC9A 4DGHA 4LTYA 4V0VA 5HPEA 2WDCA 4KBPA 3AGEA 1Z2WA 2IE3C 4AE2A 1IT6A 1UTEA 2A22A 1J7XA 4XS5A 1HO5A 2YEQA 1QFCA 4GHNA 1WARA 5EUUA 1UF3A 3IVDA 3PSNA 1S3NA 1TH8B 1TCOA 5EUSA 2B78A 4ORAA 1XZWA 3QFMA 3AUZA 4FCXA 1II7A 2KLNA 2QFPA 2YVTA 2IAEC 4OR9A 3RL4A 3GMFA 4H2GA 1K32A 4NZVA 1HPUA 3H62B 2HYOA 4IL1A 2NYMC 4UT3A 3ZTBA 4UT3B 2XMOA 1N6EA 1OIEA 1S8EA 3T6OA 1Z2XA 3VSEA 1S3LA 1FJMA 2BCDA 3GVLA 2NXFA 5EUXA 3GVJA 3P71C 3RQZA 5IOHA 4TUGA 5JJTA 3C5WC 3JYFA 4DGFA 4JA7A 4LACC 1H4YA 4DMGA 1S70A 2USHA 1VC1A 3FLOA 4HIZA 3H64A 4XPNA 3IHBA 5JPFA 2R17A 1T70A 5EUWA 3K50A 4JC0A 3DORA 2DXLA 3RL3A 4M0VA 2BQ8X 2QJCA 2ZOAA 3LDFA 3LKLA 4I5LC 3QFOA 3AV0A 2CWWA 4H1SA 4H2BA 3ZTVA 1BUZA 1THNB 4Q7FA 5GTUA 5F3WA 1OIDA 4O24A 3H69A 2VY9A 4MP0A 3ICFA 4UWQA 3V8VA 3T1IA 1BPLA 4AEJA 3GVEA 3H66A 3V4YA 1TIDB 2ZO9B 2O8GA 2WDEA 3GK7A 5EQVA 3LLOA 2HY1A 1S3MA 3IH9A 4ORBA 1N6FA 4O5GA 3THOB 4O4KA 3E0JA 1AUIA 4F0ZA 1N6DA 2HYPA 1NNWA 4DT2A 4ZX2A 2DXNA 4V0WA 4YKEA 2AHDA 4FBKA 5C1VA 3C9FA 3V97A 4L8KA 4HD0A 3D3UA 1V0EA 1H4ZA 2Q8UA 3QG5C 1G5BA 3OIZA 1W24A 2OASA 5EUZA 5J28A 2Z06A 4I5NC 4ORCA 3H61A 4H1YP 1SU1A 3PSOA 1JK7A 4H2FA 3MOGA 2AS0A 1XM7A 3AGDA 1FC7A 2CV9A 1WAO1 3E7BA 3EGGA 3K7WC 1HF2A 1HP1A 2WDDA 2P6BA 3H63A 3FGAC 3N5UA 4TUIA 4FBQA 3KBPA 2GJUA 3ZXNA 3EGHA 3IF5A 3THNA 5JPEA 3C0KA 5B8IA 2IE4C 4J6OA 4MOVA 1S95A 1MF8A 1TILB 2QFRA 2NYLC 4B2OA 3QFKA 4JA9A 3H68A 3ZU0A 4IYPC 3H60A 1V0FA 5EZBA 1FC6A 3DSDA 1H4XA 4DSYA 3TGHA 2ZBMA 2KKNA 3HVQA 3F43A 2O8AA 3DSCA 3EH7A 3QDQA 3IB8A 1OI8A 1KBPA 2Z72A
chains in the Genus database with same CATH topology
1FCFA 2DFJA 3K7VC 4G9JA 4KKZA 4L1CA 3DW8C 3D03A 3IB7A 4O43A 5INBA 3DUPA 3H67A 1T71A 3DJAA 1V73A 2NPPC 5DNYA 3GHFA 1USHA 4V0XA 1U32A 4FBWA 3E7AA 4WWLA 4DHLA 1QHWA 4H2IA 4MOYA 2WDFA 3CK2A 4LU9A 4ZVZA 2RRLA 2BDXA 3IVEA 2Z1AA 2JOGA 3QFNA 3RL5A 1M63A 4LTYA 3LL8A 5HPEA 4V0VA 1FC9A 2WDCA 4KBPA 1Z2WA 2IE3C 4AE2A 2A22A 1IT6A 1UTEA 1J7XA 1HO5A 2YEQA 4UT2A 1QFCA 1WARA 4GHNA 1UF3A 3IVDA 3PSNA 1S3NA 1TCOA 4ORAA 1XZWA 3QFMA 3AUZA 4FCXA 1II7A 2QFPA 3RL4A 2YVTA 2IAEC 4OR9A 3GMFA 4H2GA 1K32A 4NZVA 1HPUA 3H62B 2HYOA 4IL1A 2NYMC 4UT3A 4UT3B 2XMOA 1N6EA 1OIEA 1S8EA 1Z2XA 2NXFA 2O8GA 1S3LA 1FJMA 2BCDA 3GVEA 3P71C 3RQZA 5IOHA 4TUGA 5JJTA 3C5WC 3JYFA 4JA7A 4LACC 1S70A 2USHA 3FLOA 3H64A 4XPNA 5JPFA 2R17A 1T70A 3K50A 4JC0A 2DXLA 3DORA 3RL3A 4M0VA 2BQ8X 2QJCA 2ZOAA 4I5LC 3QFOA 3AV0A 4H1SA 4H2BA 3ZTVA 4Q7FA 5GTUA 5F3WA 1OIDA 4O24A 3H69A 4MP0A 3ICFA 4UWQA 3T1IA 1BPLA 4AEJA 3H66A 3V4YA 2ZO9B 2WDEA 5EQVA 2HY1A 1S3MA 4ORBA 1N6FA 4O5GA 3THOB 4O4KA 3E0JA 1AUIA 4F0ZA 1N6DA 2HYPA 1NNWA 4DT2A 4ZX2A 2DXNA 4V0WA 4YKEA 2AHDA 4FBKA 5C1VA 3C9FA 4HD0A 4L8KA 2Q8UA 3QG5C 1G5BA 1W24A 5J28A 2Z06A 4I5NC 4ORCA 3H61A 4H1YP 1SU1A 3PSOA 1JK7A 4H2FA 3MOGA 1XM7A 2CV9A 1FC7A 3E7BA 1WAO1 3EGGA 3K7WC 1HP1A 2WDDA 2P6BA 3H63A 3FGAC 3N5UA 4TUIA 4FBQA 3KBPA 2GJUA 3EGHA 3THNA 5JPEA 5B8IA 2IE4C 4J6OA 4MOVA 1S95A 1MF8A 2QFRA 4B2OA 2NYLC 3QFKA 4JA9A 3H68A 3ZU0A 4IYPC 3H60A 1FC6A 3DSDA 4DSYA 3TGHA 2ZBMA 2KKNA 3HVQA 2O8AA 3DSCA 3IB8A 1OI8A 1KBPA 2Z72A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXN A;  3D03 A;  2ZOA A;  2DXL A;  2ZO9 B; 
#chains in the Genus database with same CATH topology
 1FCF A;  2DFJ A;  3K7V C;  4G9J A;  4UT2 A;  4KKZ A;  4L1C A;  4QTP A;  3D03 A;  3DW8 C;  3IB7 A;  4O43 A;  5INB A;  3DUP A;  3H67 A;  3IHA A;  3DJA A;  4HYL A;  1T71 A;  1V73 A;  2NPP C;  5DNY A;  3GHF A;  1USH A;  4V0X A;  3GVK A;  1U32 A;  4FBW A;  3E7A A;  3IH8 A;  1WXW A;  4WWL A;  4DHL A;  1QHW A;  4H2I A;  1T6R A;  4MOY A;  3OIR A;  2WDF A;  3MGL A;  3CK2 A;  4LU9 A;  4ZVZ A;  2RRL A;  2BDX A;  3IVE A;  3JU4 A;  2Z1A A;  2JOG A;  1SBO A;  3QFN A;  3RL5 A;  2KA5 A;  1M63 A;  3NY7 A;  1WXX A;  1AUZ A;  3LL8 A;  1FC9 A;  4DGH A;  4LTY A;  4V0V A;  5HPE A;  2WDC A;  4KBP A;  3AGE A;  1Z2W A;  2IE3 C;  4AE2 A;  1IT6 A;  1UTE A;  2A22 A;  1J7X A;  4XS5 A;  1HO5 A;  2YEQ A;  1QFC A;  4GHN A;  1WAR A;  5EUU A;  1UF3 A;  3IVD A;  3PSN A;  1S3N A;  1TH8 B;  1TCO A;  5EUS A;  2B78 A;  4ORA A;  1XZW A;  3QFM A;  3AUZ A;  4FCX A;  1II7 A;  2KLN A;  2QFP A;  2YVT A;  2IAE C;  4OR9 A;  3RL4 A;  3GMF A;  4H2G A;  1K32 A;  4NZV A;  1HPU A;  3H62 B;  2HYO A;  4IL1 A;  2NYM C;  4UT3 A;  3ZTB A;  4UT3 B;  2XMO A;  1N6E A;  1OIE A;  1S8E A;  3T6O A;  1Z2X A;  3VSE A;  1S3L A;  1FJM A;  2BCD A;  3GVL A;  2NXF A;  5EUX A;  3GVJ A;  3P71 C;  3RQZ A;  5IOH A;  4TUG A;  5JJT A;  3C5W C;  3JYF A;  4DGF A;  4JA7 A;  4LAC C;  1H4Y A;  4DMG A;  1S70 A;  2USH A;  1VC1 A;  3FLO A;  4HIZ A;  3H64 A;  4XPN A;  3IHB A;  5JPF A;  2R17 A;  1T70 A;  5EUW A;  3K50 A;  4JC0 A;  3DOR A;  2DXL A;  3RL3 A;  4M0V A;  2BQ8 X;  2QJC A;  2ZOA A;  3LDF A;  3LKL A;  4I5L C;  3QFO A;  3AV0 A;  2CWW A;  4H1S A;  4H2B A;  3ZTV A;  1BUZ A;  1THN B;  4Q7F A;  5GTU A;  5F3W A;  1OID A;  4O24 A;  3H69 A;  2VY9 A;  4MP0 A;  3ICF A;  4UWQ A;  3V8V A;  3T1I A;  1BPL A;  4AEJ A;  3GVE A;  3H66 A;  3V4Y A;  1TID B;  2ZO9 B;  2O8G A;  2WDE A;  3GK7 A;  5EQV A;  3LLO A;  2HY1 A;  1S3M A;  3IH9 A;  4ORB A;  1N6F A;  4O5G A;  3THO B;  4O4K A;  3E0J A;  1AUI A;  4F0Z A;  1N6D A;  2HYP A;  1NNW A;  4DT2 A;  4ZX2 A;  2DXN A;  4V0W A;  4YKE A;  2AHD A;  4FBK A;  5C1V A;  3C9F A;  3V97 A;  4L8K A;  4HD0 A;  3D3U A;  1V0E A;  1H4Z A;  2Q8U A;  3QG5 C;  1G5B A;  3OIZ A;  1W24 A;  2OAS A;  5EUZ A;  5J28 A;  2Z06 A;  4I5N C;  4ORC A;  3H61 A;  4H1Y P;  1SU1 A;  3PSO A;  1JK7 A;  4H2F A;  3MOG A;  2AS0 A;  1XM7 A;  3AGD A;  1FC7 A;  2CV9 A;  1WAO 1;  3E7B A;  3EGG A;  3K7W C;  1HF2 A;  1HP1 A;  2WDD A;  2P6B A;  3H63 A;  3FGA C;  3N5U A;  4TUI A;  4FBQ A;  3KBP A;  2GJU A;  3ZXN A;  3EGH A;  3IF5 A;  3THN A;  5JPE A;  3C0K A;  5B8I A;  2IE4 C;  4J6O A;  4MOV A;  1S95 A;  1MF8 A;  1TIL B;  2QFR A;  2NYL C;  4B2O A;  3QFK A;  4JA9 A;  3H68 A;  3ZU0 A;  4IYP C;  3H60 A;  1V0F A;  5EZB A;  1FC6 A;  3DSD A;  1H4X A;  4DSY A;  3TGH A;  2ZBM A;  2KKN A;  3HVQ A;  3F43 A;  2O8A A;  3DSC A;  3EH7 A;  3QDQ A;  3IB8 A;  1OI8 A;  1KBP A;  2Z72 A; 
#chains in the Genus database with same CATH homology
 1FCF A;  2DFJ A;  3K7V C;  4G9J A;  4KKZ A;  4L1C A;  3DW8 C;  3D03 A;  3IB7 A;  4O43 A;  5INB A;  3DUP A;  3H67 A;  1T71 A;  3DJA A;  1V73 A;  2NPP C;  5DNY A;  3GHF A;  1USH A;  4V0X A;  1U32 A;  4FBW A;  3E7A A;  4WWL A;  4DHL A;  1QHW A;  4H2I A;  4MOY A;  2WDF A;  3CK2 A;  4LU9 A;  4ZVZ A;  2RRL A;  2BDX A;  3IVE A;  2Z1A A;  2JOG A;  3QFN A;  3RL5 A;  1M63 A;  4LTY A;  3LL8 A;  5HPE A;  4V0V A;  1FC9 A;  2WDC A;  4KBP A;  1Z2W A;  2IE3 C;  4AE2 A;  2A22 A;  1IT6 A;  1UTE A;  1J7X A;  1HO5 A;  2YEQ A;  4UT2 A;  1QFC A;  1WAR A;  4GHN A;  1UF3 A;  3IVD A;  3PSN A;  1S3N A;  1TCO A;  4ORA A;  1XZW A;  3QFM A;  3AUZ A;  4FCX A;  1II7 A;  2QFP A;  3RL4 A;  2YVT A;  2IAE C;  4OR9 A;  3GMF A;  4H2G A;  1K32 A;  4NZV A;  1HPU A;  3H62 B;  2HYO A;  4IL1 A;  2NYM C;  4UT3 A;  4UT3 B;  2XMO A;  1N6E A;  1OIE A;  1S8E A;  1Z2X A;  2NXF A;  2O8G A;  1S3L A;  1FJM A;  2BCD A;  3GVE A;  3P71 C;  3RQZ A;  5IOH A;  4TUG A;  5JJT A;  3C5W C;  3JYF A;  4JA7 A;  4LAC C;  1S70 A;  2USH A;  3FLO A;  3H64 A;  4XPN A;  5JPF A;  2R17 A;  1T70 A;  3K50 A;  4JC0 A;  2DXL A;  3DOR A;  3RL3 A;  4M0V A;  2BQ8 X;  2QJC A;  2ZOA A;  4I5L C;  3QFO A;  3AV0 A;  4H1S A;  4H2B A;  3ZTV A;  4Q7F A;  5GTU A;  5F3W A;  1OID A;  4O24 A;  3H69 A;  4MP0 A;  3ICF A;  4UWQ A;  3T1I A;  1BPL A;  4AEJ A;  3H66 A;  3V4Y A;  2ZO9 B;  2WDE A;  5EQV A;  2HY1 A;  1S3M A;  4ORB A;  1N6F A;  4O5G A;  3THO B;  4O4K A;  3E0J A;  1AUI A;  4F0Z A;  1N6D A;  2HYP A;  1NNW A;  4DT2 A;  4ZX2 A;  2DXN A;  4V0W A;  4YKE A;  2AHD A;  4FBK A;  5C1V A;  3C9F A;  4HD0 A;  4L8K A;  2Q8U A;  3QG5 C;  1G5B A;  1W24 A;  5J28 A;  2Z06 A;  4I5N C;  4ORC A;  3H61 A;  4H1Y P;  1SU1 A;  3PSO A;  1JK7 A;  4H2F A;  3MOG A;  1XM7 A;  2CV9 A;  1FC7 A;  3E7B A;  1WAO 1;  3EGG A;  3K7W C;  1HP1 A;  2WDD A;  2P6B A;  3H63 A;  3FGA C;  3N5U A;  4TUI A;  4FBQ A;  3KBP A;  2GJU A;  3EGH A;  3THN A;  5JPE A;  5B8I A;  2IE4 C;  4J6O A;  4MOV A;  1S95 A;  1MF8 A;  2QFR A;  4B2O A;  2NYL C;  3QFK A;  4JA9 A;  3H68 A;  3ZU0 A;  4IYP C;  3H60 A;  1FC6 A;  3DSD A;  4DSY A;  3TGH A;  2ZBM A;  2KKN A;  3HVQ A;  2O8A A;  3DSC A;  3IB8 A;  1OI8 A;  1KBP A;  2Z72 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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