2DXLA

Glycerophosphodiesterase from enterobacter aerogenes
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHEDTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence B
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2006-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2dxlA02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2dxlA01
2DXNA 2DXLA 2ZO9B 2ZOAA 3D03A
chains in the Genus database with same CATH superfamily
5EUWA 4FCXA 4Q7FA 1OIDA 3H61A 1H4XA 3IVDA 4DSYA 3DUPA 2O8AA 2NYLC 3H67A 1WARA 3H68A 5DNYA 1J7XA 1OIEA 4ZX2A 2RRLA 3CK2A 4WWLA 4FBKA 5EUXA 3OIRA 1HO5A 2YVTA 4G9JA 3DSCA 4QTPA 1N6DA 2YEQA 4LU9A 1HF2A 3GVJA 2B78A 3K7WC 3JU4A 3PSNA 3K50A 3IB7A 4KBPA 4NZVA 5IOHA 4HIZA 3N5UA 1OI8A 4OR9A 1KBPA 4TUGA 3AGDA 1WAO1 2KKNA 2QJCA 3EGHA 4J6OA 3RL3A 1WXWA 1II7A 1G5BA 5J28A 4H2GA 2HYPA 4ZVZA 1M63A 1FC9A 2GJUA 3QFKA 4H1YP 3ZXNA 1FC6A 3IHBA 4H2IA 3GK7A 2A22A 4O24A 2IE3C 1T6RA 2BDXA 3ZTVA 3AUZA 3QFNA 4ORBA 5EUSA 1N6EA 2AHDA 3P71C 4FBQA 3T1IA 3E0JA 1TILB 3H69A 3IH8A 1S8EA 1XZWA 3GVEA 3EH7A 3LLOA 3IHAA 1K32A 1FJMA 3H64A 4HD0A 3THNA 2DXLA 4ORCA 2WDEA 4V0WA 4H2BA 1UF3A 4DHLA 1TIDB 3DW8C 3FGAC 3TGHA 1SBOA 1S3LA 3RL5A 5EZBA 4IYPC 2BQ8X 3F43A 2ZBMA 3DORA 5JPEA 1S70A 1JK7A 1V0EA 3DSDA 2IAEC 4H2FA 4O4KA 3EGGA 3T6OA 1QHWA 3IVEA 2NPPC 3JYFA 1QFCA 3C9FA 1TH8B 1HPUA 2Z72A 3IB8A 4O43A 4I5NC 4L1CA 3AV0A 3DJAA 4O5GA 4UT2A 4DGFA 3RL4A 3ZU0A 3H62B 1S3MA 1MF8A 2WDDA 3E7BA 1T70A 1V0FA 2QFPA 3GHFA 3IH9A 3K7VC 4JA9A 3GVKA 3MOGA 3VSEA 4AE2A 4DMGA 1V73A 4AEJA 2NXFA 3V8VA 3LL8A 4YKEA 2IE4C 5EUUA 3QFMA 5JPFA 1VC1A 3E7AA 3ICFA 3QDQA 3PSOA 2R17A 4MOYA 4MP0A 2CV9A 5C1VA 3C0KA 3D3UA 4JA7A 1UTEA 3H60A 5INBA 1AUIA 4XS5A 2WDFA 4I5LC 4IL1A 3THOB 3HVQA 4GHNA 3KBPA 1S3NA 4V0VA 4L8KA 2Q8UA 1BPLA 2XMOA 1SU1A 4F0ZA 3NY7A 1H4ZA 5HPEA 2CWWA 3QG5C 3LKLA 5JJTA 2NYMC 3FLOA 1Z2WA 3QFOA 4FBWA 4MOVA 4KKZA 2Z06A 4V0XA 3V97A 2Z1AA 4M0VA 1WXXA 5F3WA 4UT3A 4TUIA 2QFRA 3OIZA 1BUZA 2USHA 3V4YA 5B8IA 2HYOA 3D03A 4LTYA 4UT3B 1H4YA 4HYLA 3RQZA 1S95A 2WDCA 3H66A 5GTUA 3GVLA 2OASA 4DGHA 2ZO9B 4DT2A 1THNB 1W24A 2BCDA 1N6FA 3C5WC 2KLNA 4JC0A 5EQVA 2AS0A 3AGEA 2DFJA 1FCFA 2DXNA 2VY9A 5EUZA 2O8GA 4UWQA 4H1SA 1USHA 3H63A 4ORAA 4XPNA 3GMFA 1NNWA 3ZTBA 1FC7A 1TCOA 1XM7A 1HP1A 3LDFA 1T71A 2KA5A 1AUZA 1IT6A 4LACC 4B2OA 2P6BA 1U32A 2HY1A 2JOGA 2ZOAA 3MGLA 3IF5A 1Z2XA
chains in the Genus database with same CATH topology
4FCXA 4Q7FA 1OIDA 3H61A 3IVDA 4DSYA 3DUPA 2O8AA 2NYLC 3H67A 1WARA 3H68A 5DNYA 1J7XA 1OIEA 4ZX2A 2RRLA 3CK2A 4WWLA 4FBKA 4G9JA 2YVTA 1HO5A 3DSCA 4LU9A 1N6DA 2YEQA 3K7WC 3PSNA 3K50A 3IB7A 4KBPA 4NZVA 5IOHA 3N5UA 1OI8A 4OR9A 1KBPA 4TUGA 1WAO1 2KKNA 2QJCA 3EGHA 4J6OA 3RL3A 1II7A 1G5BA 5J28A 4H2GA 2HYPA 4ZVZA 1M63A 1FC9A 2GJUA 3QFKA 4H1YP 1FC6A 4H2IA 2A22A 4O24A 2IE3C 2BDXA 3ZTVA 3AUZA 3QFNA 4ORBA 1N6EA 2AHDA 3P71C 4FBQA 3T1IA 3E0JA 3H69A 1S8EA 1XZWA 3GVEA 1FJMA 3H64A 1K32A 3THNA 4HD0A 2DXLA 4ORCA 2WDEA 4V0WA 4H2BA 1UF3A 4DHLA 3TGHA 3DW8C 3FGAC 1S3LA 3RL5A 4IYPC 2BQ8X 2ZBMA 3DORA 5JPEA 1S70A 1JK7A 3DSDA 2IAEC 4H2FA 4O4KA 3EGGA 1QHWA 3IVEA 3JYFA 2NPPC 1QFCA 3C9FA 1HPUA 2Z72A 3IB8A 4O43A 4I5NC 4L1CA 3AV0A 3DJAA 4O5GA 4UT2A 3RL4A 3ZU0A 3H62B 1S3MA 1MF8A 2WDDA 3E7BA 1T70A 2QFPA 3GHFA 3K7VC 4JA9A 4AE2A 3MOGA 1V73A 2NXFA 3LL8A 4AEJA 4YKEA 2IE4C 5JPFA 3QFMA 3ICFA 3E7AA 3PSOA 2R17A 4MOYA 4MP0A 2CV9A 5C1VA 4JA7A 1UTEA 3H60A 5INBA 1AUIA 2WDFA 4I5LC 4IL1A 3THOB 3HVQA 4GHNA 3KBPA 1S3NA 4V0VA 4L8KA 2Q8UA 1BPLA 2XMOA 1SU1A 4F0ZA 5HPEA 3QG5C 5JJTA 2NYMC 3FLOA 1Z2WA 3QFOA 4FBWA 4MOVA 4KKZA 2Z06A 4V0XA 2Z1AA 4M0VA 5F3WA 4UT3A 4TUIA 2QFRA 2USHA 3V4YA 5B8IA 2HYOA 3D03A 4LTYA 4UT3B 3RQZA 1S95A 2WDCA 3H66A 5GTUA 2ZO9B 4DT2A 1W24A 2BCDA 1N6FA 3C5WC 5EQVA 4JC0A 2DFJA 1FCFA 2DXNA 2O8GA 4UWQA 4H1SA 1USHA 3H63A 4ORAA 4XPNA 3GMFA 1NNWA 1FC7A 1TCOA 1XM7A 1HP1A 1T71A 4LACC 4B2OA 1IT6A 2P6BA 1U32A 2HY1A 2JOGA 2ZOAA 1Z2XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXN A;  2DXL A;  2ZO9 B;  2ZOA A;  3D03 A; 
#chains in the Genus database with same CATH topology
 5EUW A;  4FCX A;  4Q7F A;  1OID A;  3H61 A;  1H4X A;  3IVD A;  4DSY A;  3DUP A;  2O8A A;  2NYL C;  3H67 A;  1WAR A;  3H68 A;  5DNY A;  1J7X A;  1OIE A;  4ZX2 A;  2RRL A;  3CK2 A;  4WWL A;  4FBK A;  5EUX A;  3OIR A;  1HO5 A;  2YVT A;  4G9J A;  3DSC A;  4QTP A;  1N6D A;  2YEQ A;  4LU9 A;  1HF2 A;  3GVJ A;  2B78 A;  3K7W C;  3JU4 A;  3PSN A;  3K50 A;  3IB7 A;  4KBP A;  4NZV A;  5IOH A;  4HIZ A;  3N5U A;  1OI8 A;  4OR9 A;  1KBP A;  4TUG A;  3AGD A;  1WAO 1;  2KKN A;  2QJC A;  3EGH A;  4J6O A;  3RL3 A;  1WXW A;  1II7 A;  1G5B A;  5J28 A;  4H2G A;  2HYP A;  4ZVZ A;  1M63 A;  1FC9 A;  2GJU A;  3QFK A;  4H1Y P;  3ZXN A;  1FC6 A;  3IHB A;  4H2I A;  3GK7 A;  2A22 A;  4O24 A;  2IE3 C;  1T6R A;  2BDX A;  3ZTV A;  3AUZ A;  3QFN A;  4ORB A;  5EUS A;  1N6E A;  2AHD A;  3P71 C;  4FBQ A;  3T1I A;  3E0J A;  1TIL B;  3H69 A;  3IH8 A;  1S8E A;  1XZW A;  3GVE A;  3EH7 A;  3LLO A;  3IHA A;  1K32 A;  1FJM A;  3H64 A;  4HD0 A;  3THN A;  2DXL A;  4ORC A;  2WDE A;  4V0W A;  4H2B A;  1UF3 A;  4DHL A;  1TID B;  3DW8 C;  3FGA C;  3TGH A;  1SBO A;  1S3L A;  3RL5 A;  5EZB A;  4IYP C;  2BQ8 X;  3F43 A;  2ZBM A;  3DOR A;  5JPE A;  1S70 A;  1JK7 A;  1V0E A;  3DSD A;  2IAE C;  4H2F A;  4O4K A;  3EGG A;  3T6O A;  1QHW A;  3IVE A;  2NPP C;  3JYF A;  1QFC A;  3C9F A;  1TH8 B;  1HPU A;  2Z72 A;  3IB8 A;  4O43 A;  4I5N C;  4L1C A;  3AV0 A;  3DJA A;  4O5G A;  4UT2 A;  4DGF A;  3RL4 A;  3ZU0 A;  3H62 B;  1S3M A;  1MF8 A;  2WDD A;  3E7B A;  1T70 A;  1V0F A;  2QFP A;  3GHF A;  3IH9 A;  3K7V C;  4JA9 A;  3GVK A;  3MOG A;  3VSE A;  4AE2 A;  4DMG A;  1V73 A;  4AEJ A;  2NXF A;  3V8V A;  3LL8 A;  4YKE A;  2IE4 C;  5EUU A;  3QFM A;  5JPF A;  1VC1 A;  3E7A A;  3ICF A;  3QDQ A;  3PSO A;  2R17 A;  4MOY A;  4MP0 A;  2CV9 A;  5C1V A;  3C0K A;  3D3U A;  4JA7 A;  1UTE A;  3H60 A;  5INB A;  1AUI A;  4XS5 A;  2WDF A;  4I5L C;  4IL1 A;  3THO B;  3HVQ A;  4GHN A;  3KBP A;  1S3N A;  4V0V A;  4L8K A;  2Q8U A;  1BPL A;  2XMO A;  1SU1 A;  4F0Z A;  3NY7 A;  1H4Z A;  5HPE A;  2CWW A;  3QG5 C;  3LKL A;  5JJT A;  2NYM C;  3FLO A;  1Z2W A;  3QFO A;  4FBW A;  4MOV A;  4KKZ A;  2Z06 A;  4V0X A;  3V97 A;  2Z1A A;  4M0V A;  1WXX A;  5F3W A;  4UT3 A;  4TUI A;  2QFR A;  3OIZ A;  1BUZ A;  2USH A;  3V4Y A;  5B8I A;  2HYO A;  3D03 A;  4LTY A;  4UT3 B;  1H4Y A;  4HYL A;  3RQZ A;  1S95 A;  2WDC A;  3H66 A;  5GTU A;  3GVL A;  2OAS A;  4DGH A;  2ZO9 B;  4DT2 A;  1THN B;  1W24 A;  2BCD A;  1N6F A;  3C5W C;  2KLN A;  4JC0 A;  5EQV A;  2AS0 A;  3AGE A;  2DFJ A;  1FCF A;  2DXN A;  2VY9 A;  5EUZ A;  2O8G A;  4UWQ A;  4H1S A;  1USH A;  3H63 A;  4ORA A;  4XPN A;  3GMF A;  1NNW A;  3ZTB A;  1FC7 A;  1TCO A;  1XM7 A;  1HP1 A;  3LDF A;  1T71 A;  2KA5 A;  1AUZ A;  1IT6 A;  4LAC C;  4B2O A;  2P6B A;  1U32 A;  2HY1 A;  2JOG A;  2ZOA A;  3MGL A;  3IF5 A;  1Z2X A; 
#chains in the Genus database with same CATH homology
 4FCX A;  4Q7F A;  1OID A;  3H61 A;  3IVD A;  4DSY A;  3DUP A;  2O8A A;  2NYL C;  3H67 A;  1WAR A;  3H68 A;  5DNY A;  1J7X A;  1OIE A;  4ZX2 A;  2RRL A;  3CK2 A;  4WWL A;  4FBK A;  4G9J A;  2YVT A;  1HO5 A;  3DSC A;  4LU9 A;  1N6D A;  2YEQ A;  3K7W C;  3PSN A;  3K50 A;  3IB7 A;  4KBP A;  4NZV A;  5IOH A;  3N5U A;  1OI8 A;  4OR9 A;  1KBP A;  4TUG A;  1WAO 1;  2KKN A;  2QJC A;  3EGH A;  4J6O A;  3RL3 A;  1II7 A;  1G5B A;  5J28 A;  4H2G A;  2HYP A;  4ZVZ A;  1M63 A;  1FC9 A;  2GJU A;  3QFK A;  4H1Y P;  1FC6 A;  4H2I A;  2A22 A;  4O24 A;  2IE3 C;  2BDX A;  3ZTV A;  3AUZ A;  3QFN A;  4ORB A;  1N6E A;  2AHD A;  3P71 C;  4FBQ A;  3T1I A;  3E0J A;  3H69 A;  1S8E A;  1XZW A;  3GVE A;  1FJM A;  3H64 A;  1K32 A;  3THN A;  4HD0 A;  2DXL A;  4ORC A;  2WDE A;  4V0W A;  4H2B A;  1UF3 A;  4DHL A;  3TGH A;  3DW8 C;  3FGA C;  1S3L A;  3RL5 A;  4IYP C;  2BQ8 X;  2ZBM A;  3DOR A;  5JPE A;  1S70 A;  1JK7 A;  3DSD A;  2IAE C;  4H2F A;  4O4K A;  3EGG A;  1QHW A;  3IVE A;  3JYF A;  2NPP C;  1QFC A;  3C9F A;  1HPU A;  2Z72 A;  3IB8 A;  4O43 A;  4I5N C;  4L1C A;  3AV0 A;  3DJA A;  4O5G A;  4UT2 A;  3RL4 A;  3ZU0 A;  3H62 B;  1S3M A;  1MF8 A;  2WDD A;  3E7B A;  1T70 A;  2QFP A;  3GHF A;  3K7V C;  4JA9 A;  4AE2 A;  3MOG A;  1V73 A;  2NXF A;  3LL8 A;  4AEJ A;  4YKE A;  2IE4 C;  5JPF A;  3QFM A;  3ICF A;  3E7A A;  3PSO A;  2R17 A;  4MOY A;  4MP0 A;  2CV9 A;  5C1V A;  4JA7 A;  1UTE A;  3H60 A;  5INB A;  1AUI A;  2WDF A;  4I5L C;  4IL1 A;  3THO B;  3HVQ A;  4GHN A;  3KBP A;  1S3N A;  4V0V A;  4L8K A;  2Q8U A;  1BPL A;  2XMO A;  1SU1 A;  4F0Z A;  5HPE A;  3QG5 C;  5JJT A;  2NYM C;  3FLO A;  1Z2W A;  3QFO A;  4FBW A;  4MOV A;  4KKZ A;  2Z06 A;  4V0X A;  2Z1A A;  4M0V A;  5F3W A;  4UT3 A;  4TUI A;  2QFR A;  2USH A;  3V4Y A;  5B8I A;  2HYO A;  3D03 A;  4LTY A;  4UT3 B;  3RQZ A;  1S95 A;  2WDC A;  3H66 A;  5GTU A;  2ZO9 B;  4DT2 A;  1W24 A;  2BCD A;  1N6F A;  3C5W C;  5EQV A;  4JC0 A;  2DFJ A;  1FCF A;  2DXN A;  2O8G A;  4UWQ A;  4H1S A;  1USH A;  3H63 A;  4ORA A;  4XPN A;  3GMF A;  1NNW A;  1FC7 A;  1TCO A;  1XM7 A;  1HP1 A;  1T71 A;  4LAC C;  4B2O A;  1IT6 A;  2P6B A;  1U32 A;  2HY1 A;  2JOG A;  2ZOA A;  1Z2X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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