2E16A

Crystal structure of glu140 to arg mutant of diphthine synthase
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPRGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e16A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e16A01
1WYZA 2OWUA 2DSIA 2PB6A 2E4RA 2YBOA 2OWVA 2PCAA 2HUXA 2E8RA 1PJTA 2EHLA 2P6IA 2EH4A 1PJSA 2BB3A 3NDCA 3ND1A 2ELEA 2E8SA 2EEQA 1VCEA 2E7RA 2PCIA 2EHCA 2EGBA 2ED3A 2EGSA 1VHVA 2E17A 1WDEA 2EMUA 2P5CA 2DV4A 2EK2A 2DV3A 2P9DA 2CBFA 2EKAA 4E16A 2P5FA 2PCMA 2DXVA 2ENIA 3I4TA 2YBQA 2E07A 2DXXA 2DV5A 5HW4A 2EJJA 2E0NA 2E4NA 2P6KA 1CBFA 2DSHA 2EL0A 2EGLA 3HH1A 1PJQA 2E08A 2EJZA 2OWGA 2EL1A 2E15A 2E0KA 2EK7A 2P6LA 2PCGA 2EK3A 1VE2A 2E8HA 2OWFA 2P6DA 2EMRA 2E8QA 2NPNA 2EL2A 2HUQA 1V9AA 3NEIA 3KWPA 1S4DA 2P2XA 2DXWA 2OWKA 2Z6RA 2ED5A 2HUTA 2DV7A 2EH5A 2PB5A 2DSGA 2EK4A 2ZVBA 2PCKA 3FFYA 3NUTA 2DEKA 2HUVA 1WNGA 1VA0A 3FQ6A 2EJKA 2PCHA 2HR8A 2QBUA 2ZVCA 2EL3A 2E16A 2EN5A 2PB4A 2ELDA 2EH2A
chains in the Genus database with same CATH superfamily
1WYZA 2OWUA 3UTCA 2DSIA 3ZGNA 2PB6A 2E4RA 2YBOA 4H4EA 2OWVA 3TIXB 2PCAA 3F7TA 2HUXA 3ZGLA 2E8RA 1PJTA 2EHLA 2P6IA 3SZLA 2EH4A 1PJSA 3KELA 4N7BA 3UV6A 2BB3A 3NDCA 3ND1A 2ELEA 2E8SA 2EEQA 1VCEA 2E7RA 2PCIA 2EHCA 2EGBA 2ED3A 2EGSA 1VHVA 2E17A 3UV3A 1WDEA 2EMUA 2P5CA 2DV4A 3KEFA 4MUYA 2EK2A 4MV5A 3KEMA 3URKA 2DV3A 4EB3A 2P9DA 2CBFA 2EKAA 3DNFA 4E16A 2P5FA 3UV7A 2PCMA 2DXVA 3KE9A 2ENIA 3I4TA 2YBQA 3SZOA 2E07A 2DXXA 2DV5A 5HW4A 4MUXA 2EJJA 2E0NA 2E4NA 2P6KA 1CBFA 2DSHA 2EL0A 2EGLA 3UWMA 3HH1A 3LMMA 1PJQA 2E08A 2EJZA 2OWGA 4H4DA 2EL1A 2E15A 2E0KA 3SZUA 3UTDA 2EK7A 2P6LA 2PCGA 2EK3A 3KE8A 1VE2A 2E8HA 2OWFA 2P6DA 2EMRA 3T0FA 2E8QA 2NPNA 2EL2A 3T0GA 2HUQA 1V9AA 3NEIA 3KWPA 1S4DA 2P2XA 2DXWA 2OWKA 2Z6RA 2ED5A 2HUTA 2DV7A 2EH5A 2PB5A 2DSGA 2EK4A 2ZVBA 2PCKA 3FFYA 3NUTA 2DEKA 4MV0A 2HUVA 1WNGA 1VA0A 3FQ6A 2EJKA 2PCHA 2HR8A 2QBUA 2ZVCA 4H4CA 2KYYA 2EL3A 2E16A 2EN5A 2PB4A 2ELDA 2EH2A
chains in the Genus database with same CATH topology
1WYZA 2OWUA 3UTCA 2DSIA 3ZGNA 2PB6A 2E4RA 2YBOA 4H4EA 2OWVA 3TIXB 2PCAA 3F7TA 2HUXA 3ZGLA 2E8RA 1PJTA 2EHLA 2P6IA 3SZLA 2EH4A 1PJSA 3KELA 4N7BA 3UV6A 2BB3A 3NDCA 3ND1A 2ELEA 2E8SA 2EEQA 1VCEA 2E7RA 2PCIA 2EHCA 2EGBA 2ED3A 2EGSA 1VHVA 2E17A 3UV3A 1WDEA 2EMUA 2P5CA 2DV4A 3KEFA 4MUYA 2EK2A 4MV5A 3KEMA 3URKA 2DV3A 4EB3A 2P9DA 2CBFA 2EKAA 3DNFA 4E16A 2P5FA 3UV7A 2PCMA 2DXVA 3KE9A 2ENIA 3I4TA 2YBQA 3SZOA 2E07A 2DXXA 2DV5A 5HW4A 4MUXA 2EJJA 2E0NA 2E4NA 2P6KA 1CBFA 2DSHA 2EL0A 2EGLA 3UWMA 3HH1A 3LMMA 1PJQA 2E08A 2EJZA 2OWGA 4H4DA 2EL1A 2E15A 2E0KA 3SZUA 3UTDA 2EK7A 2P6LA 2PCGA 2EK3A 3KE8A 1VE2A 2E8HA 2OWFA 2P6DA 2EMRA 3T0FA 2E8QA 2NPNA 2EL2A 3T0GA 2HUQA 1V9AA 3NEIA 3KWPA 1S4DA 2P2XA 2DXWA 2OWKA 2Z6RA 2ED5A 2HUTA 2DV7A 2EH5A 2PB5A 2DSGA 2EK4A 2ZVBA 2PCKA 3FFYA 3NUTA 2DEKA 4MV0A 2HUVA 1WNGA 1VA0A 3FQ6A 2EJKA 2PCHA 2HR8A 2QBUA 2ZVCA 4H4CA 2KYYA 2EL3A 2E16A 2EN5A 2PB4A 2ELDA 2EH2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WYZ A;  2OWU A;  2DSI A;  2PB6 A;  2E4R A;  2YBO A;  2OWV A;  2PCA A;  2HUX A;  2E8R A;  1PJT A;  2EHL A;  2P6I A;  2EH4 A;  1PJS A;  2BB3 A;  3NDC A;  3ND1 A;  2ELE A;  2E8S A;  2EEQ A;  1VCE A;  2E7R A;  2PCI A;  2EHC A;  2EGB A;  2ED3 A;  2EGS A;  1VHV A;  2E17 A;  1WDE A;  2EMU A;  2P5C A;  2DV4 A;  2EK2 A;  2DV3 A;  2P9D A;  2CBF A;  2EKA A;  4E16 A;  2P5F A;  2PCM A;  2DXV A;  2ENI A;  3I4T A;  2YBQ A;  2E07 A;  2DXX A;  2DV5 A;  5HW4 A;  2EJJ A;  2E0N A;  2E4N A;  2P6K A;  1CBF A;  2DSH A;  2EL0 A;  2EGL A;  3HH1 A;  1PJQ A;  2E08 A;  2EJZ A;  2OWG A;  2EL1 A;  2E15 A;  2E0K A;  2EK7 A;  2P6L A;  2PCG A;  2EK3 A;  1VE2 A;  2E8H A;  2OWF A;  2P6D A;  2EMR A;  2E8Q A;  2NPN A;  2EL2 A;  2HUQ A;  1V9A A;  3NEI A;  3KWP A;  1S4D A;  2P2X A;  2DXW A;  2OWK A;  2Z6R A;  2ED5 A;  2HUT A;  2DV7 A;  2EH5 A;  2PB5 A;  2DSG A;  2EK4 A;  2ZVB A;  2PCK A;  3FFY A;  3NUT A;  2DEK A;  2HUV A;  1WNG A;  1VA0 A;  3FQ6 A;  2EJK A;  2PCH A;  2HR8 A;  2QBU A;  2ZVC A;  2EL3 A;  2E16 A;  2EN5 A;  2PB4 A;  2ELD A;  2EH2 A; 
#chains in the Genus database with same CATH topology
 1WYZ A;  2OWU A;  3UTC A;  2DSI A;  3ZGN A;  2PB6 A;  2E4R A;  2YBO A;  4H4E A;  2OWV A;  3TIX B;  2PCA A;  3F7T A;  2HUX A;  3ZGL A;  2E8R A;  1PJT A;  2EHL A;  2P6I A;  3SZL A;  2EH4 A;  1PJS A;  3KEL A;  4N7B A;  3UV6 A;  2BB3 A;  3NDC A;  3ND1 A;  2ELE A;  2E8S A;  2EEQ A;  1VCE A;  2E7R A;  2PCI A;  2EHC A;  2EGB A;  2ED3 A;  2EGS A;  1VHV A;  2E17 A;  3UV3 A;  1WDE A;  2EMU A;  2P5C A;  2DV4 A;  3KEF A;  4MUY A;  2EK2 A;  4MV5 A;  3KEM A;  3URK A;  2DV3 A;  4EB3 A;  2P9D A;  2CBF A;  2EKA A;  3DNF A;  4E16 A;  2P5F A;  3UV7 A;  2PCM A;  2DXV A;  3KE9 A;  2ENI A;  3I4T A;  2YBQ A;  3SZO A;  2E07 A;  2DXX A;  2DV5 A;  5HW4 A;  4MUX A;  2EJJ A;  2E0N A;  2E4N A;  2P6K A;  1CBF A;  2DSH A;  2EL0 A;  2EGL A;  3UWM A;  3HH1 A;  3LMM A;  1PJQ A;  2E08 A;  2EJZ A;  2OWG A;  4H4D A;  2EL1 A;  2E15 A;  2E0K A;  3SZU A;  3UTD A;  2EK7 A;  2P6L A;  2PCG A;  2EK3 A;  3KE8 A;  1VE2 A;  2E8H A;  2OWF A;  2P6D A;  2EMR A;  3T0F A;  2E8Q A;  2NPN A;  2EL2 A;  3T0G A;  2HUQ A;  1V9A A;  3NEI A;  3KWP A;  1S4D A;  2P2X A;  2DXW A;  2OWK A;  2Z6R A;  2ED5 A;  2HUT A;  2DV7 A;  2EH5 A;  2PB5 A;  2DSG A;  2EK4 A;  2ZVB A;  2PCK A;  3FFY A;  3NUT A;  2DEK A;  4MV0 A;  2HUV A;  1WNG A;  1VA0 A;  3FQ6 A;  2EJK A;  2PCH A;  2HR8 A;  2QBU A;  2ZVC A;  4H4C A;  2KYY A;  2EL3 A;  2E16 A;  2EN5 A;  2PB4 A;  2ELD A;  2EH2 A; 
#chains in the Genus database with same CATH homology
 1WYZ A;  2OWU A;  3UTC A;  2DSI A;  3ZGN A;  2PB6 A;  2E4R A;  2YBO A;  4H4E A;  2OWV A;  3TIX B;  2PCA A;  3F7T A;  2HUX A;  3ZGL A;  2E8R A;  1PJT A;  2EHL A;  2P6I A;  3SZL A;  2EH4 A;  1PJS A;  3KEL A;  4N7B A;  3UV6 A;  2BB3 A;  3NDC A;  3ND1 A;  2ELE A;  2E8S A;  2EEQ A;  1VCE A;  2E7R A;  2PCI A;  2EHC A;  2EGB A;  2ED3 A;  2EGS A;  1VHV A;  2E17 A;  3UV3 A;  1WDE A;  2EMU A;  2P5C A;  2DV4 A;  3KEF A;  4MUY A;  2EK2 A;  4MV5 A;  3KEM A;  3URK A;  2DV3 A;  4EB3 A;  2P9D A;  2CBF A;  2EKA A;  3DNF A;  4E16 A;  2P5F A;  3UV7 A;  2PCM A;  2DXV A;  3KE9 A;  2ENI A;  3I4T A;  2YBQ A;  3SZO A;  2E07 A;  2DXX A;  2DV5 A;  5HW4 A;  4MUX A;  2EJJ A;  2E0N A;  2E4N A;  2P6K A;  1CBF A;  2DSH A;  2EL0 A;  2EGL A;  3UWM A;  3HH1 A;  3LMM A;  1PJQ A;  2E08 A;  2EJZ A;  2OWG A;  4H4D A;  2EL1 A;  2E15 A;  2E0K A;  3SZU A;  3UTD A;  2EK7 A;  2P6L A;  2PCG A;  2EK3 A;  3KE8 A;  1VE2 A;  2E8H A;  2OWF A;  2P6D A;  2EMR A;  3T0F A;  2E8Q A;  2NPN A;  2EL2 A;  3T0G A;  2HUQ A;  1V9A A;  3NEI A;  3KWP A;  1S4D A;  2P2X A;  2DXW A;  2OWK A;  2Z6R A;  2ED5 A;  2HUT A;  2DV7 A;  2EH5 A;  2PB5 A;  2DSG A;  2EK4 A;  2ZVB A;  2PCK A;  3FFY A;  3NUT A;  2DEK A;  4MV0 A;  2HUV A;  1WNG A;  1VA0 A;  3FQ6 A;  2EJK A;  2PCH A;  2HR8 A;  2QBU A;  2ZVC A;  4H4C A;  2KYY A;  2EL3 A;  2E16 A;  2EN5 A;  2PB4 A;  2ELD A;  2EH2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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