2E2HL

Rna polymerase ii elongation complex at 5 mm mg2+ with gtp
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription,transferase/dna-rna hybrid
molecule keywords 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'
publication title Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
pubmed doi rcsb
total genus 2
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2e2hL00
3GTJL 3GTKL 4A3GL 1WCML 3GTGL 3K7AL 3H3VM 4A93L 4C3JL 1K83L 3S2DL 3S15L 1I6HL 2PMZP 4QIWP 5M3ML 2YU9L 2NVTL 5M5WL 5IP9L 4Y52L 2B63L 4C3HL 5M5YL 2E2IL 1TWHL 2WAQP 2R92L 3S16L 3S2HL 3M4OL 2WB1P 3S17L 1R9TL 4BBSL 4A3DL 3S1RL 3I4ML 5IYDL 4A3JL 2Y0SP 4C3IL 5M5XL 5IYBL 3GTOL 3S14L 3RZOL 3PO2L 3HOYL 5C44L 4A3BL 4AYBP 2NVYL 4BY1L 2JA8L 3GTQL 3M3YL 4A3CL 4BBRL 3S1ML 1Y1WL 1Y1VL 5C3EL 1TWAL 5FJ8L 3S1NL 3HOWL 2VUML 3S1QL 1TWFL 3CQZL 2NVXL 2R93L 3RZDL 4A3EL 4A3KL 3HOUL 5C4JL 2E2HL 3GTPL 2R7ZL 3I4NL 4A3ML 5M3FL 3HKZP 4C2M1 1I3QL 1TWCL 1I50L 4X6AL 2JA6L 4Y7NL 3HOVL 4BXXL 3HOZL 5C4XL 3FKIL 5FLML 2E2JL 2NVQL 4A3IL 1TWGL 3GTML 5IP7L 3GTLL 3H0GL 5IYCL 4A3LL 3HOXL 4A3FL 3PO3L 2JA5L 4BY7L 1SFOL 2JA7L
chains in the Genus database with same CATH superfamily
3GTKL 1SMUA 2AYJA 1YK5A 3RYGA 4ME3A 4JAFA 1IRNA 4C3JL 5GAGc 5MFZA 3S15L 2PMZP 4QIWP 1IROA 1B2OA 4B8CD 4RXNA 2A68D 3WWNB 3P8BA 7RXNA 2O5JD 2XJQA 4Y52L 2B63L 4C3HL 5GAHc 3B0AB 2WAQP 4GS7D 4TPUA 2K2DA 1LTLA 2R92L 3S17L 4BBSL 4A3DL 2V3BB 4A3JL 2Y0SP 5AN9H 4C3IL 4POFA 3GTOL 3K35A 4XGHA 1S24A 1DX8A 4JADA 2NVYL 4BY1L 2JA8L 3GTQL 2XJSA 3S1ML 3H99A 2C6AA 1BFYA 3PZAA 3KYXA 4AR3A 5MFPA 1NNQA 2PYAA 3LWOB 1RYQA 3MQKB 3NFPI 3MSUA 3QQCE 4TVMA 4BY7L 2RFKB 4XXBB 4A3ML 4AR5A 4V196 4AHXA 3RZTA 4X6AL 2JA6L 4Y7NL 1R0IA 2Z3RB 2XJPA 3HOZL 5MF6A 1VZGA 3FKIL 3J7Z1 5FLML 6RXNA 3GTLL 1QQTA 1LKPA 1NXEA 1B2JA 3KYYA 1QCVA 5GADc 3HOXL 4A3FL 3PO3L 2DSXA 3LWRB 4AR6A 2ZIXA 2CKCA 3GTJL 2HVYC 1BE7A 1WCML 3H3VM 1K83L 2ERSA 5JVG1 4ZN1B 1P7PA 4AHYA 1I6HL 5M3ML 4ZN3B 1E8JA 2YU9L 5IP9L 4WFN1 2ERJA 1F4LA 3IU3I 3S16L 3S2HL 3PKJA 3I4ML 5IYDL 4LHLA 2LCQA 5IYBL 4AI2A 3P2AA 3HOYL 2EY4E 3J7Y1 5EIOC 1LKMA 1SMWA 4A3CL 1BQ8A 1Y1WL 1TWAL 5FJ8L 3HOWL 1TWFL 3H97A 1T9PA 4E6YA 1VZIA 4YWMA 3H9CA 4A3EL 4LHNA 4A3KL 2PVXA 2B5ID 1FHHA 1SMMA 3GTPL 5MGNA 3HKZP 4G6BA 1NXGA 4C2M1 1I3QL 1TWCL 1T9OA 3FDJA 3MPSA 5C4XL 5JVH1 4U671 1T9QA 2E2JL 4AR4A 2NVQL 4A3IL 1TWGL 5IP7L 1DVBA 1FHMA 3VPBE 2JI1A 2XJVA 5H1Sc 2L0ZA 3PIP1 1S2ZA 2M6OA 2MS3A 2A6HD 1SFOL 2JA7L 2PSMC 4A3GL 2PVEA 2AQCA 3GTGL 2M4VA 4AHWA 4A93L 3S2DL 2KN9A 3PKIA 8RXNA 1R0JA 2RDVA 1JYBA 1PFWA 5AI2A 5M5WL 1YV1A 3SS2A 1VZHA 3B08B 1RDVA 5EINC 1RYTA 1TWHL 2APOB 3PWFA 3M4OL 2WB1P 1R9TL 5K2ME 3KYUA 3S1RL 4UY81 3HJWB 1R0FA 1OWCA 5M5XL 3H9BA 3RZOL 4A3BL 4AYBP 1Z92B 4AHZA 5RXNA 1B71A 2V0FA 5DM71 5C3EL 3PL5A 4YWLA 2XJRA 2NVXL 2R93L 3RZDL 4K9FA 2JI2A 3HOUL 3PIO1 1LKOA 2JI3A 2R7ZL 5M3FL 1BQ9A 1R0HA 2C6BA 1IW7D 1I50L 1ODHA 2H12A 3HOVL 4POGA 4BXXL 4AI0A 1YK4A 1PFYA 3HAXC 3LWQB 3GTML 4JAEA 1ZRPA 2M6PA 3LNLA 2J9UB 4AI3A 2CR8A 2QL0A 1IU5A 1C09A 2E2HL 3WWLA 1S30A 1YUXA 3K7AL 5MLC3 3A44A 2NVTL 2BE5D 1H7VA 3LWVB 5M5YL 2E2IL 3RZ6A 2CKAA 3LPEB 2M4YA 1RDGA 2PPTA 4AI1A 3S14L 1RWDA 2HR5A 1OWBA 5IY0A 3PO2L 5C44L 3M3YL 1RB9A 1CADA 4BBRL 3LWPB 1CAAA 2NYDA 1B13A 1VCXA 5GAEc 1IU6A 3KYWA 1Y1VL 3S1NL 2VUML 3S1QL 2AUSB 3CQZL 3ZG6A 2VL6A 5DM61 2Z3QB 1WJVA 5C4JL 1PZXA 3I4NL 1PFVA 1PFUA 3HJYB 1QYBA 3QVDA 2A6ED 2V0EA 2KKDA 4JAGA 5AI3A 1BRFA 1YUZA 3KYVA 3H0GL 3JR7A 5IYCL 2A69D 4A3LL 2XJTA 1R0GA 2JA5L 2GMGA 2XJUA
chains in the Genus database with same CATH topology
3GTJL 3GTKL 4A3GL 1WCML 3GTGL 3K7AL 3H3VM 4A93L 4C3JL 1K83L 3S2DL 3S15L 1I6HL 2PMZP 4QIWP 5M3ML 2YU9L 2NVTL 5M5WL 5IP9L 4Y52L 2B63L 4C3HL 5M5YL 2E2IL 1TWHL 2WAQP 2R92L 3S16L 3S2HL 3M4OL 2WB1P 3S17L 1R9TL 4BBSL 4A3DL 3S1RL 3I4ML 5IYDL 4A3JL 2Y0SP 4C3IL 5M5XL 5IYBL 3GTOL 3S14L 3RZOL 3PO2L 3HOYL 5C44L 4A3BL 4AYBP 2NVYL 4BY1L 2JA8L 3GTQL 3M3YL 4A3CL 4BBRL 3S1ML 1Y1WL 1Y1VL 5C3EL 1TWAL 5FJ8L 3S1NL 3HOWL 2VUML 3S1QL 1TWFL 3CQZL 2NVXL 2R93L 3RZDL 4A3EL 4A3KL 3HOUL 5C4JL 2E2HL 3GTPL 2R7ZL 3I4NL 4A3ML 5M3FL 3HKZP 4C2M1 1I3QL 1TWCL 1I50L 4X6AL 2JA6L 4Y7NL 3HOVL 4BXXL 3HOZL 5C4XL 3FKIL 5FLML 2E2JL 2NVQL 4A3IL 1TWGL 3GTML 5IP7L 3GTLL 3H0GL 5IYCL 4A3LL 3HOXL 4A3FL 3PO3L 2JA5L 4BY7L 1SFOL 2JA7L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTJ L;  3GTK L;  4A3G L;  1WCM L;  3GTG L;  3K7A L;  3H3V M;  4A93 L;  4C3J L;  1K83 L;  3S2D L;  3S15 L;  1I6H L;  2PMZ P;  4QIW P;  5M3M L;  2YU9 L;  2NVT L;  5M5W L;  5IP9 L;  4Y52 L;  2B63 L;  4C3H L;  5M5Y L;  2E2I L;  1TWH L;  2WAQ P;  2R92 L;  3S16 L;  3S2H L;  3M4O L;  2WB1 P;  3S17 L;  1R9T L;  4BBS L;  4A3D L;  3S1R L;  3I4M L;  5IYD L;  4A3J L;  2Y0S P;  4C3I L;  5M5X L;  5IYB L;  3GTO L;  3S14 L;  3RZO L;  3PO2 L;  3HOY L;  5C44 L;  4A3B L;  4AYB P;  2NVY L;  4BY1 L;  2JA8 L;  3GTQ L;  3M3Y L;  4A3C L;  4BBR L;  3S1M L;  1Y1W L;  1Y1V L;  5C3E L;  1TWA L;  5FJ8 L;  3S1N L;  3HOW L;  2VUM L;  3S1Q L;  1TWF L;  3CQZ L;  2NVX L;  2R93 L;  3RZD L;  4A3E L;  4A3K L;  3HOU L;  5C4J L;  2E2H L;  3GTP L;  2R7Z L;  3I4N L;  4A3M L;  5M3F L;  3HKZ P;  4C2M 1;  1I3Q L;  1TWC L;  1I50 L;  4X6A L;  2JA6 L;  4Y7N L;  3HOV L;  4BXX L;  3HOZ L;  5C4X L;  3FKI L;  5FLM L;  2E2J L;  2NVQ L;  4A3I L;  1TWG L;  3GTM L;  5IP7 L;  3GTL L;  3H0G L;  5IYC L;  4A3L L;  3HOX L;  4A3F L;  3PO3 L;  2JA5 L;  4BY7 L;  1SFO L;  2JA7 L; 
#chains in the Genus database with same CATH topology
 3GTK L;  1SMU A;  2AYJ A;  1YK5 A;  3RYG A;  4ME3 A;  4JAF A;  1IRN A;  4C3J L;  5GAG c;  5MFZ A;  3S15 L;  2PMZ P;  4QIW P;  1IRO A;  1B2O A;  4B8C D;  4RXN A;  2A68 D;  3WWN B;  3P8B A;  7RXN A;  2O5J D;  2XJQ A;  4Y52 L;  2B63 L;  4C3H L;  5GAH c;  3B0A B;  2WAQ P;  4GS7 D;  4TPU A;  2K2D A;  1LTL A;  2R92 L;  3S17 L;  4BBS L;  4A3D L;  2V3B B;  4A3J L;  2Y0S P;  5AN9 H;  4C3I L;  4POF A;  3GTO L;  3K35 A;  4XGH A;  1S24 A;  1DX8 A;  4JAD A;  2NVY L;  4BY1 L;  2JA8 L;  3GTQ L;  2XJS A;  3S1M L;  3H99 A;  2C6A A;  1BFY A;  3PZA A;  3KYX A;  4AR3 A;  5MFP A;  1NNQ A;  2PYA A;  3LWO B;  1RYQ A;  3MQK B;  3NFP I;  3MSU A;  3QQC E;  4TVM A;  4BY7 L;  2RFK B;  4XXB B;  4A3M L;  4AR5 A;  4V19 6;  4AHX A;  3RZT A;  4X6A L;  2JA6 L;  4Y7N L;  1R0I A;  2Z3R B;  2XJP A;  3HOZ L;  5MF6 A;  1VZG A;  3FKI L;  3J7Z 1;  5FLM L;  6RXN A;  3GTL L;  1QQT A;  1LKP A;  1NXE A;  1B2J A;  3KYY A;  1QCV A;  5GAD c;  3HOX L;  4A3F L;  3PO3 L;  2DSX A;  3LWR B;  4AR6 A;  2ZIX A;  2CKC A;  3GTJ L;  2HVY C;  1BE7 A;  1WCM L;  3H3V M;  1K83 L;  2ERS A;  5JVG 1;  4ZN1 B;  1P7P A;  4AHY A;  1I6H L;  5M3M L;  4ZN3 B;  1E8J A;  2YU9 L;  5IP9 L;  4WFN 1;  2ERJ A;  1F4L A;  3IU3 I;  3S16 L;  3S2H L;  3PKJ A;  3I4M L;  5IYD L;  4LHL A;  2LCQ A;  5IYB L;  4AI2 A;  3P2A A;  3HOY L;  2EY4 E;  3J7Y 1;  5EIO C;  1LKM A;  1SMW A;  4A3C L;  1BQ8 A;  1Y1W L;  1TWA L;  5FJ8 L;  3HOW L;  1TWF L;  3H97 A;  1T9P A;  4E6Y A;  1VZI A;  4YWM A;  3H9C A;  4A3E L;  4LHN A;  4A3K L;  2PVX A;  2B5I D;  1FHH A;  1SMM A;  3GTP L;  5MGN A;  3HKZ P;  4G6B A;  1NXG A;  4C2M 1;  1I3Q L;  1TWC L;  1T9O A;  3FDJ A;  3MPS A;  5C4X L;  5JVH 1;  4U67 1;  1T9Q A;  2E2J L;  4AR4 A;  2NVQ L;  4A3I L;  1TWG L;  5IP7 L;  1DVB A;  1FHM A;  3VPB E;  2JI1 A;  2XJV A;  5H1S c;  2L0Z A;  3PIP 1;  1S2Z A;  2M6O A;  2MS3 A;  2A6H D;  1SFO L;  2JA7 L;  2PSM C;  4A3G L;  2PVE A;  2AQC A;  3GTG L;  2M4V A;  4AHW A;  4A93 L;  3S2D L;  2KN9 A;  3PKI A;  8RXN A;  1R0J A;  2RDV A;  1JYB A;  1PFW A;  5AI2 A;  5M5W L;  1YV1 A;  3SS2 A;  1VZH A;  3B08 B;  1RDV A;  5EIN C;  1RYT A;  1TWH L;  2APO B;  3PWF A;  3M4O L;  2WB1 P;  1R9T L;  5K2M E;  3KYU A;  3S1R L;  4UY8 1;  3HJW B;  1R0F A;  1OWC A;  5M5X L;  3H9B A;  3RZO L;  4A3B L;  4AYB P;  1Z92 B;  4AHZ A;  5RXN A;  1B71 A;  2V0F A;  5DM7 1;  5C3E L;  3PL5 A;  4YWL A;  2XJR A;  2NVX L;  2R93 L;  3RZD L;  4K9F A;  2JI2 A;  3HOU L;  3PIO 1;  1LKO A;  2JI3 A;  2R7Z L;  5M3F L;  1BQ9 A;  1R0H A;  2C6B A;  1IW7 D;  1I50 L;  1ODH A;  2H12 A;  3HOV L;  4POG A;  4BXX L;  4AI0 A;  1YK4 A;  1PFY A;  3HAX C;  3LWQ B;  3GTM L;  4JAE A;  1ZRP A;  2M6P A;  3LNL A;  2J9U B;  4AI3 A;  2CR8 A;  2QL0 A;  1IU5 A;  1C09 A;  2E2H L;  3WWL A;  1S30 A;  1YUX A;  3K7A L;  5MLC 3;  3A44 A;  2NVT L;  2BE5 D;  1H7V A;  3LWV B;  5M5Y L;  2E2I L;  3RZ6 A;  2CKA A;  3LPE B;  2M4Y A;  1RDG A;  2PPT A;  4AI1 A;  3S14 L;  1RWD A;  2HR5 A;  1OWB A;  5IY0 A;  3PO2 L;  5C44 L;  3M3Y L;  1RB9 A;  1CAD A;  4BBR L;  3LWP B;  1CAA A;  2NYD A;  1B13 A;  1VCX A;  5GAE c;  1IU6 A;  3KYW A;  1Y1V L;  3S1N L;  2VUM L;  3S1Q L;  2AUS B;  3CQZ L;  3ZG6 A;  2VL6 A;  5DM6 1;  2Z3Q B;  1WJV A;  5C4J L;  1PZX A;  3I4N L;  1PFV A;  1PFU A;  3HJY B;  1QYB A;  3QVD A;  2A6E D;  2V0E A;  2KKD A;  4JAG A;  5AI3 A;  1BRF A;  1YUZ A;  3KYV A;  3H0G L;  3JR7 A;  5IYC L;  2A69 D;  4A3L L;  2XJT A;  1R0G A;  2JA5 L;  2GMG A;  2XJU A; 
#chains in the Genus database with same CATH homology
 3GTJ L;  3GTK L;  4A3G L;  1WCM L;  3GTG L;  3K7A L;  3H3V M;  4A93 L;  4C3J L;  1K83 L;  3S2D L;  3S15 L;  1I6H L;  2PMZ P;  4QIW P;  5M3M L;  2YU9 L;  2NVT L;  5M5W L;  5IP9 L;  4Y52 L;  2B63 L;  4C3H L;  5M5Y L;  2E2I L;  1TWH L;  2WAQ P;  2R92 L;  3S16 L;  3S2H L;  3M4O L;  2WB1 P;  3S17 L;  1R9T L;  4BBS L;  4A3D L;  3S1R L;  3I4M L;  5IYD L;  4A3J L;  2Y0S P;  4C3I L;  5M5X L;  5IYB L;  3GTO L;  3S14 L;  3RZO L;  3PO2 L;  3HOY L;  5C44 L;  4A3B L;  4AYB P;  2NVY L;  4BY1 L;  2JA8 L;  3GTQ L;  3M3Y L;  4A3C L;  4BBR L;  3S1M L;  1Y1W L;  1Y1V L;  5C3E L;  1TWA L;  5FJ8 L;  3S1N L;  3HOW L;  2VUM L;  3S1Q L;  1TWF L;  3CQZ L;  2NVX L;  2R93 L;  3RZD L;  4A3E L;  4A3K L;  3HOU L;  5C4J L;  2E2H L;  3GTP L;  2R7Z L;  3I4N L;  4A3M L;  5M3F L;  3HKZ P;  4C2M 1;  1I3Q L;  1TWC L;  1I50 L;  4X6A L;  2JA6 L;  4Y7N L;  3HOV L;  4BXX L;  3HOZ L;  5C4X L;  3FKI L;  5FLM L;  2E2J L;  2NVQ L;  4A3I L;  1TWG L;  3GTM L;  5IP7 L;  3GTL L;  3H0G L;  5IYC L;  4A3L L;  3HOX L;  4A3F L;  3PO3 L;  2JA5 L;  4BY7 L;  1SFO L;  2JA7 L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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