2E2IL

Rna polymerase ii elongation complex in 5 mm mg+2 with 2'-dgtp
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription,transferase/dna-rna hybrid
molecule keywords 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'
publication title Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
pubmed doi rcsb
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2e2iL00
4A3CL 1TWFL 4Y7NL 5C44L 1TWAL 4C2M1 3S16L 3S1QL 2WB1P 4A3IL 3RZDL 5FJ8L 3RZOL 5IP7L 5M3ML 3PO3L 3S1RL 1TWCL 3S14L 2JA7L 3GTOL 2PMZP 2NVQL 4A3LL 3S1NL 3HOYL 2NVYL 2JA6L 1K83L 2E2HL 2E2IL 3I4NL 3HOZL 4A3ML 4BY7L 5IYCL 5M5WL 4BXXL 3HOXL 3PO2L 3K7AL 4C3IL 3GTJL 2NVTL 1R9TL 4QIWP 4X6AL 2Y0SP 2NVXL 4A93L 3GTQL 5IYBL 3GTKL 4A3BL 2WAQP 3M3YL 3FKIL 4BBRL 3GTML 4A3FL 4AYBP 1TWGL 3GTGL 3HOUL 2R93L 5C4XL 5IP9L 4A3JL 4A3KL 3M4OL 3H0GL 2E2JL 1I6HL 3S15L 5C3EL 1Y1VL 2R92L 4BBSL 3H3VM 1TWHL 2JA8L 1Y1WL 3GTLL 3HOWL 2JA5L 5M5XL 3HOVL 2VUML 4Y52L 5C4JL 1WCML 1I3QL 5M3FL 3S2DL 4A3DL 4C3HL 1SFOL 3HKZP 3S2HL 2B63L 3S1ML 5IYDL 4BY1L 4A3GL 2R7ZL 1I50L 4C3JL 4A3EL 3GTPL 3S17L 3I4ML 5M5YL 5FLML 3CQZL 2YU9L
chains in the Genus database with same CATH superfamily
3IU3I 5MFZA 3H99A 3RZTA 4Y7NL 3LNLA 1TWAL 5EIOC 3S16L 3S1QL 3VPBE 1BRFA 5MFPA 2WB1P 5FJ8L 1PFWA 2PMZP 4WFN1 4A3LL 1T9QA 3SS2A 1K83L 3I4NL 3J7Z1 3KYUA 1B13A 3H97A 1IROA 3HOXL 3PO2L 3K7AL 2QL0A 1T9PA 1NXGA 4C3IL 1R9TL 2XJPA 5IYBL 1Z92B 3GTKL 2HVYC 2C6BA 4LHLA 2XJTA 8RXNA 4AYBP 2DSXA 1OWBA 2V0FA 3GTGL 5GADc 1IW7D 4TPUA 1R0IA 4AHYA 3NFPI 2R93L 1BFYA 5DM71 4POFA 3H0GL 1OWCA 4POGA 1Y1VL 3RYGA 2M6PA 3H3VM 1TWHL 1Y1WL 1IU6A 3HOWL 2JA5L 3HOVL 1YK4A 2XJQA 5C4JL 2AUSB 5M3FL 4C3HL 1YUXA 4ZN1B 1I50L 1IRNA 1R0FA 4C3JL 4K9FA 1NNQA 2EY4E 6RXNA 7RXNA 3PZAA 1LTLA 1TWFL 2M4VA 3MSUA 5C44L 2XJSA 5AI3A 1RYTA 3LWRB 1C09A 4V196 3WWNB 3S1NL 3LWVB 2PSMC 2HR5A 3K35A 1QCVA 4AHZA 4YWLA 1S30A 3HOZL 2AYJA 1FHMA 2M4YA 5JVH1 4BY7L 5IYCL 1P7PA 2XJRA 2AQCA 2KKDA 4AR3A 5K2ME 3GTJL 4YWMA 3WWLA 4AR4A 1B2JA 2Z3RB 4LHNA 4AHXA 2H12A 2Y0SP 2NVXL 4A93L 1BQ8A 3M3YL 3FKIL 4BBRL 2BE5D 4A3FL 1PFVA 1RB9A 1TWGL 3QQCE 5AN9H 2JI2A 4AHWA 4AR6A 5IP9L 3HJYB 3M4OL 1F4LA 1YK5A 5C3EL 1ZRPA 4BBSL 2C6AA 5M5XL 1VZGA 1WCML 3S2DL 1SMMA 4E6YA 2B63L 4G6BA 5IYDL 4BY1L 2R7ZL 3HAXC 4ZN3B 1PZXA 4A3EL 1PFYA 1FHHA 4UY81 3LWQB 4AI2A 1NXEA 4ME3A 4A3CL 1B71A 3PWFA 3JR7A 3QVDA 2PVEA 3HJWB 3PIO1 4A3IL 3RZDL 3RZOL 1ODHA 5IP7L 5M3ML 3S1RL 1TWCL 4RXNA 3S14L 1R0HA 2JA7L 3GTOL 3PKJA 2E2HL 2E2IL 3PKIA 1VZIA 2A6HD 2ERSA 4JAFA 3LWOB 5M5WL 2CKCA 2NVTL 3FDJA 4X6AL 2CKAA 1R0JA 3P8BA 3LPEB 5IY0A 5GAEc 4XXBB 1DX8A 1CADA 2K2DA 3HOUL 3ZG6A 1S24A 5C4XL 4AR5A 2RDVA 3A44A 1LKOA 2E2JL 5MF6A 2XJUA 5H1Sc 3B08B 3PL5A 2A69D 2NYDA 3GTLL 5GAGc 1LKMA 2VUML 4Y52L 2L0ZA 1RDVA 1VZHA 2Z3QB 1LKPA 1IU5A 3S2HL 5AI2A 3S17L 2PVXA 5M5YL 5FLML 2XJVA 2YU9L 1SMUA 1B2OA 1YUZA 4AI0A 3J7Y1 4C2M1 5JVG1 2ERJA 2A6ED 2B5ID 2KN9A 4AI1A 3PO3L 2NVQL 3KYVA 2PPTA 3HOYL 1YV1A 2NVYL 2JA6L 4JADA 3B0AB 1BQ9A 4GS7D 4A3ML 4BXXL 1RDGA 3P2AA 1E8JA 1BE7A 1SMWA 1QQTA 4QIWP 3GTQL 1WJVA 4A3BL 4JAGA 2WAQP 2O5JD 4XGHA 3MPSA 3GTML 2J9UB 1RWDA 1T9OA 2CR8A 2V3BB 5MLC3 5MGNA 3KYWA 4AI3A 2RFKB 3H9CA 5GAHc 1PFUA 4B8CD 3LWPB 4A3JL 4A3KL 2APOB 2MS3A 2ZIXA 3H9BA 2GMGA 1I6HL 3S15L 2LCQA 2M6OA 2V0EA 2R92L 1RYQA 2JA8L 3MQKB 1CAAA 4U671 4JAEA 5DM61 3KYXA 4TVMA 2A68D 2PYAA 1I3QL 4A3DL 3PIP1 1R0GA 1SFOL 3HKZP 3S1ML 1DVBA 1H7VA 1QYBA 2JI3A 3RZ6A 4A3GL 1VCXA 5RXNA 1JYBA 5EINC 3GTPL 2VL6A 3I4ML 2JI1A 1S2ZA 3KYYA 3CQZL
chains in the Genus database with same CATH topology
4A3CL 1TWFL 4Y7NL 5C44L 1TWAL 4C2M1 3S16L 3S1QL 2WB1P 4A3IL 3RZDL 5FJ8L 3RZOL 5IP7L 5M3ML 3PO3L 3S1RL 1TWCL 3S14L 2JA7L 3GTOL 2PMZP 2NVQL 4A3LL 3S1NL 3HOYL 2NVYL 2JA6L 1K83L 2E2HL 2E2IL 3I4NL 3HOZL 4A3ML 4BY7L 5IYCL 5M5WL 4BXXL 3HOXL 3PO2L 3K7AL 4C3IL 3GTJL 2NVTL 1R9TL 4QIWP 4X6AL 2Y0SP 2NVXL 4A93L 3GTQL 5IYBL 3GTKL 4A3BL 2WAQP 3M3YL 3FKIL 4BBRL 3GTML 4A3FL 4AYBP 1TWGL 3GTGL 3HOUL 2R93L 5C4XL 5IP9L 4A3JL 4A3KL 3M4OL 3H0GL 2E2JL 1I6HL 3S15L 5C3EL 1Y1VL 2R92L 4BBSL 3H3VM 1TWHL 2JA8L 1Y1WL 3GTLL 3HOWL 2JA5L 5M5XL 3HOVL 2VUML 4Y52L 5C4JL 1WCML 1I3QL 5M3FL 3S2DL 4A3DL 4C3HL 1SFOL 3HKZP 3S2HL 2B63L 3S1ML 5IYDL 4BY1L 4A3GL 2R7ZL 1I50L 4C3JL 4A3EL 3GTPL 3S17L 3I4ML 5M5YL 5FLML 3CQZL 2YU9L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A3C L;  1TWF L;  4Y7N L;  5C44 L;  1TWA L;  4C2M 1;  3S16 L;  3S1Q L;  2WB1 P;  4A3I L;  3RZD L;  5FJ8 L;  3RZO L;  5IP7 L;  5M3M L;  3PO3 L;  3S1R L;  1TWC L;  3S14 L;  2JA7 L;  3GTO L;  2PMZ P;  2NVQ L;  4A3L L;  3S1N L;  3HOY L;  2NVY L;  2JA6 L;  1K83 L;  2E2H L;  2E2I L;  3I4N L;  3HOZ L;  4A3M L;  4BY7 L;  5IYC L;  5M5W L;  4BXX L;  3HOX L;  3PO2 L;  3K7A L;  4C3I L;  3GTJ L;  2NVT L;  1R9T L;  4QIW P;  4X6A L;  2Y0S P;  2NVX L;  4A93 L;  3GTQ L;  5IYB L;  3GTK L;  4A3B L;  2WAQ P;  3M3Y L;  3FKI L;  4BBR L;  3GTM L;  4A3F L;  4AYB P;  1TWG L;  3GTG L;  3HOU L;  2R93 L;  5C4X L;  5IP9 L;  4A3J L;  4A3K L;  3M4O L;  3H0G L;  2E2J L;  1I6H L;  3S15 L;  5C3E L;  1Y1V L;  2R92 L;  4BBS L;  3H3V M;  1TWH L;  2JA8 L;  1Y1W L;  3GTL L;  3HOW L;  2JA5 L;  5M5X L;  3HOV L;  2VUM L;  4Y52 L;  5C4J L;  1WCM L;  1I3Q L;  5M3F L;  3S2D L;  4A3D L;  4C3H L;  1SFO L;  3HKZ P;  3S2H L;  2B63 L;  3S1M L;  5IYD L;  4BY1 L;  4A3G L;  2R7Z L;  1I50 L;  4C3J L;  4A3E L;  3GTP L;  3S17 L;  3I4M L;  5M5Y L;  5FLM L;  3CQZ L;  2YU9 L; 
#chains in the Genus database with same CATH topology
 3IU3 I;  5MFZ A;  3H99 A;  3RZT A;  4Y7N L;  3LNL A;  1TWA L;  5EIO C;  3S16 L;  3S1Q L;  3VPB E;  1BRF A;  5MFP A;  2WB1 P;  5FJ8 L;  1PFW A;  2PMZ P;  4WFN 1;  4A3L L;  1T9Q A;  3SS2 A;  1K83 L;  3I4N L;  3J7Z 1;  3KYU A;  1B13 A;  3H97 A;  1IRO A;  3HOX L;  3PO2 L;  3K7A L;  2QL0 A;  1T9P A;  1NXG A;  4C3I L;  1R9T L;  2XJP A;  5IYB L;  1Z92 B;  3GTK L;  2HVY C;  2C6B A;  4LHL A;  2XJT A;  8RXN A;  4AYB P;  2DSX A;  1OWB A;  2V0F A;  3GTG L;  5GAD c;  1IW7 D;  4TPU A;  1R0I A;  4AHY A;  3NFP I;  2R93 L;  1BFY A;  5DM7 1;  4POF A;  3H0G L;  1OWC A;  4POG A;  1Y1V L;  3RYG A;  2M6P A;  3H3V M;  1TWH L;  1Y1W L;  1IU6 A;  3HOW L;  2JA5 L;  3HOV L;  1YK4 A;  2XJQ A;  5C4J L;  2AUS B;  5M3F L;  4C3H L;  1YUX A;  4ZN1 B;  1I50 L;  1IRN A;  1R0F A;  4C3J L;  4K9F A;  1NNQ A;  2EY4 E;  6RXN A;  7RXN A;  3PZA A;  1LTL A;  1TWF L;  2M4V A;  3MSU A;  5C44 L;  2XJS A;  5AI3 A;  1RYT A;  3LWR B;  1C09 A;  4V19 6;  3WWN B;  3S1N L;  3LWV B;  2PSM C;  2HR5 A;  3K35 A;  1QCV A;  4AHZ A;  4YWL A;  1S30 A;  3HOZ L;  2AYJ A;  1FHM A;  2M4Y A;  5JVH 1;  4BY7 L;  5IYC L;  1P7P A;  2XJR A;  2AQC A;  2KKD A;  4AR3 A;  5K2M E;  3GTJ L;  4YWM A;  3WWL A;  4AR4 A;  1B2J A;  2Z3R B;  4LHN A;  4AHX A;  2H12 A;  2Y0S P;  2NVX L;  4A93 L;  1BQ8 A;  3M3Y L;  3FKI L;  4BBR L;  2BE5 D;  4A3F L;  1PFV A;  1RB9 A;  1TWG L;  3QQC E;  5AN9 H;  2JI2 A;  4AHW A;  4AR6 A;  5IP9 L;  3HJY B;  3M4O L;  1F4L A;  1YK5 A;  5C3E L;  1ZRP A;  4BBS L;  2C6A A;  5M5X L;  1VZG A;  1WCM L;  3S2D L;  1SMM A;  4E6Y A;  2B63 L;  4G6B A;  5IYD L;  4BY1 L;  2R7Z L;  3HAX C;  4ZN3 B;  1PZX A;  4A3E L;  1PFY A;  1FHH A;  4UY8 1;  3LWQ B;  4AI2 A;  1NXE A;  4ME3 A;  4A3C L;  1B71 A;  3PWF A;  3JR7 A;  3QVD A;  2PVE A;  3HJW B;  3PIO 1;  4A3I L;  3RZD L;  3RZO L;  1ODH A;  5IP7 L;  5M3M L;  3S1R L;  1TWC L;  4RXN A;  3S14 L;  1R0H A;  2JA7 L;  3GTO L;  3PKJ A;  2E2H L;  2E2I L;  3PKI A;  1VZI A;  2A6H D;  2ERS A;  4JAF A;  3LWO B;  5M5W L;  2CKC A;  2NVT L;  3FDJ A;  4X6A L;  2CKA A;  1R0J A;  3P8B A;  3LPE B;  5IY0 A;  5GAE c;  4XXB B;  1DX8 A;  1CAD A;  2K2D A;  3HOU L;  3ZG6 A;  1S24 A;  5C4X L;  4AR5 A;  2RDV A;  3A44 A;  1LKO A;  2E2J L;  5MF6 A;  2XJU A;  5H1S c;  3B08 B;  3PL5 A;  2A69 D;  2NYD A;  3GTL L;  5GAG c;  1LKM A;  2VUM L;  4Y52 L;  2L0Z A;  1RDV A;  1VZH A;  2Z3Q B;  1LKP A;  1IU5 A;  3S2H L;  5AI2 A;  3S17 L;  2PVX A;  5M5Y L;  5FLM L;  2XJV A;  2YU9 L;  1SMU A;  1B2O A;  1YUZ A;  4AI0 A;  3J7Y 1;  4C2M 1;  5JVG 1;  2ERJ A;  2A6E D;  2B5I D;  2KN9 A;  4AI1 A;  3PO3 L;  2NVQ L;  3KYV A;  2PPT A;  3HOY L;  1YV1 A;  2NVY L;  2JA6 L;  4JAD A;  3B0A B;  1BQ9 A;  4GS7 D;  4A3M L;  4BXX L;  1RDG A;  3P2A A;  1E8J A;  1BE7 A;  1SMW A;  1QQT A;  4QIW P;  3GTQ L;  1WJV A;  4A3B L;  4JAG A;  2WAQ P;  2O5J D;  4XGH A;  3MPS A;  3GTM L;  2J9U B;  1RWD A;  1T9O A;  2CR8 A;  2V3B B;  5MLC 3;  5MGN A;  3KYW A;  4AI3 A;  2RFK B;  3H9C A;  5GAH c;  1PFU A;  4B8C D;  3LWP B;  4A3J L;  4A3K L;  2APO B;  2MS3 A;  2ZIX A;  3H9B A;  2GMG A;  1I6H L;  3S15 L;  2LCQ A;  2M6O A;  2V0E A;  2R92 L;  1RYQ A;  2JA8 L;  3MQK B;  1CAA A;  4U67 1;  4JAE A;  5DM6 1;  3KYX A;  4TVM A;  2A68 D;  2PYA A;  1I3Q L;  4A3D L;  3PIP 1;  1R0G A;  1SFO L;  3HKZ P;  3S1M L;  1DVB A;  1H7V A;  1QYB A;  2JI3 A;  3RZ6 A;  4A3G L;  1VCX A;  5RXN A;  1JYB A;  5EIN C;  3GTP L;  2VL6 A;  3I4M L;  2JI1 A;  1S2Z A;  3KYY A;  3CQZ L; 
#chains in the Genus database with same CATH homology
 4A3C L;  1TWF L;  4Y7N L;  5C44 L;  1TWA L;  4C2M 1;  3S16 L;  3S1Q L;  2WB1 P;  4A3I L;  3RZD L;  5FJ8 L;  3RZO L;  5IP7 L;  5M3M L;  3PO3 L;  3S1R L;  1TWC L;  3S14 L;  2JA7 L;  3GTO L;  2PMZ P;  2NVQ L;  4A3L L;  3S1N L;  3HOY L;  2NVY L;  2JA6 L;  1K83 L;  2E2H L;  2E2I L;  3I4N L;  3HOZ L;  4A3M L;  4BY7 L;  5IYC L;  5M5W L;  4BXX L;  3HOX L;  3PO2 L;  3K7A L;  4C3I L;  3GTJ L;  2NVT L;  1R9T L;  4QIW P;  4X6A L;  2Y0S P;  2NVX L;  4A93 L;  3GTQ L;  5IYB L;  3GTK L;  4A3B L;  2WAQ P;  3M3Y L;  3FKI L;  4BBR L;  3GTM L;  4A3F L;  4AYB P;  1TWG L;  3GTG L;  3HOU L;  2R93 L;  5C4X L;  5IP9 L;  4A3J L;  4A3K L;  3M4O L;  3H0G L;  2E2J L;  1I6H L;  3S15 L;  5C3E L;  1Y1V L;  2R92 L;  4BBS L;  3H3V M;  1TWH L;  2JA8 L;  1Y1W L;  3GTL L;  3HOW L;  2JA5 L;  5M5X L;  3HOV L;  2VUM L;  4Y52 L;  5C4J L;  1WCM L;  1I3Q L;  5M3F L;  3S2D L;  4A3D L;  4C3H L;  1SFO L;  3HKZ P;  3S2H L;  2B63 L;  3S1M L;  5IYD L;  4BY1 L;  4A3G L;  2R7Z L;  1I50 L;  4C3J L;  4A3E L;  3GTP L;  3S17 L;  3I4M L;  5M5Y L;  5FLM L;  3CQZ L;  2YU9 L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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