2E4QA

Crystal structure of bpha3 (reduced form)
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
108
structure length
108
Chain Sequence
TFTKACSVDEVPPGEALQVSHDAQKVAIFNVDGEFFATQDQCTHGEWSLSEGGYLDGDVVECSLHMGKFCVRTGKVKSPPPCEPLKVYPIRIEGRDVLVDFSRAALHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Pseudomonas sp.
publication title Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
pubmed doi rcsb
molecule keywords Biphenyl dioxygenase ferredoxin subunit
total genus 19
structure length 108
sequence length 108
chains with identical sequence C
ec nomenclature
pdb deposition date 2006-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2e4qA00
3CXHE 4PV1D 2D2CD 3DQYA 2XSHA 1UUWA 4HM4A 4P1BH 3H1IE 3L74E 2B1XA 4NBHD 4AAYB 2BMQA 3L70E 2QJKC 4NBAD 3GOBA 2CKFA 2E76D 3VCPA 4HM2A 2HMNA 3H1KE 4H44D 3VMID 2NWFA 3AZCA 1O7NA 3EN1A 1JM1A 4P1CH 2A06E 1SQQE 2XSOA 2QJPC 1Q90C 4NBGD 1SQBE 2I7FA 4HM3A 4NB9D 1PPJE 4QDDA 1L0NE 2BMOA 1VCKA 3N0QA 2HMLA 5KLVE 1O7PA 4HM8A 1ULIA 2YFLA 4QDFB 2B24A 3GL2A 4QDFA 1PP9E 1L0LE 4HM1A 2HMJA 3GB4A 2JO6A 3GTSA 4QDCA 2DE7D 4H0LD 1ZRTE 4HM5A 2E75D 2DE5D 3BCCE 3H1LE 1O7GA 2E4PA 3CX5E 5AEUA 2HMKA 1KB9E 4NBED 2NUKA 1VF5D 2IBZE 1SQVE 3GCEA 2YFIA 2FYUE 3VCAA 1O7HA 3GKEA 1NTKE 2BMRA 3VMHD 4QUPA 4HM6A 2YFJA 1EG9A 3C0DA 1NU1E 1BCCE 4OGQD 3L73E 3GL0A 4NBCD 3H1JE 2QPZA 4HKVA 3L71E 3GTEA 2NUMA 4QURA 2ZT9D 3D89A 4HM0A 2XRXA 2YIUC 4U3FE 2NVGA 3TGUE 1SJGA 1KYOE 2NVFA 2QJYC 1NYKA 3GZXA 5HL4A 1NDOA 5AEWA 3L75E 2E4QA 2HMMA 2GBWA 4QUQA 1FQTA 2GBXA 4NB8D 1SQPE 3FOUA 1P84E 1RIEA 1SQXE 2JZAA 4HJLA 4HM7A 1ULJA 4NBFD 1RFSA 4QCKA 2XR8A 1NTME 1G8JB 3CWBE 2NVEA 3H1HE 4PD4E 1O7MA 1G8KB 4NBBD 3EQQA 2DE6D 2ZYLA 5KLIC 5KKZC 4AIVA 4NBDD 4EMJB 1NTZE 1VM9A 3VMGD 2FYNC 5BOKA 1O7WA 3GZYA 1EZVE 2YVJB 2HMOA 2E74D 1BE3E 5CXMA 4H13D 2Q3WA 1UUVA 3L72E 1WQLA 2BCCE
chains in the Genus database with same CATH superfamily
3CXHE 4PV1D 2D2CD 3DQYA 2XSHA 1UUWA 4HM4A 4P1BH 3H1IE 3L74E 2B1XA 4NBHD 4AAYB 2BMQA 3L70E 2QJKC 4NBAD 3GOBA 2CKFA 2E76D 3VCPA 4HM2A 2HMNA 3H1KE 4H44D 3VMID 2NWFA 3AZCA 1O7NA 3EN1A 1JM1A 4P1CH 2A06E 1SQQE 2XSOA 2QJPC 1Q90C 4NBGD 1SQBE 2I7FA 4HM3A 4NB9D 1PPJE 4QDDA 1L0NE 2BMOA 1VCKA 3N0QA 2HMLA 5KLVE 1O7PA 4HM8A 1ULIA 2YFLA 4QDFB 2B24A 3GL2A 4QDFA 1PP9E 1L0LE 4HM1A 2HMJA 3GB4A 2JO6A 3GTSA 4QDCA 2DE7D 4H0LD 1ZRTE 4HM5A 2E75D 2DE5D 3BCCE 3H1LE 1O7GA 2E4PA 3CX5E 5AEUA 2HMKA 1KB9E 4NBED 2NUKA 1VF5D 2IBZE 1SQVE 3GCEA 2YFIA 2FYUE 3VCAA 1O7HA 3GKEA 1NTKE 2BMRA 3VMHD 4QUPA 4HM6A 2YFJA 1EG9A 3C0DA 1NU1E 1BCCE 4OGQD 3L73E 3GL0A 4NBCD 3H1JE 2QPZA 4HKVA 3L71E 3GTEA 2NUMA 4QURA 2ZT9D 3D89A 4HM0A 2XRXA 2YIUC 4U3FE 2NVGA 3TGUE 1SJGA 1KYOE 2NVFA 2QJYC 1NYKA 3GZXA 5HL4A 1NDOA 5AEWA 3L75E 2E4QA 2HMMA 2GBWA 4QUQA 1FQTA 2GBXA 4NB8D 1SQPE 3FOUA 1P84E 1RIEA 1SQXE 2JZAA 4HJLA 4HM7A 1ULJA 4NBFD 1RFSA 4QCKA 2XR8A 1NTME 1G8JB 3CWBE 2NVEA 3H1HE 4PD4E 1O7MA 1G8KB 4NBBD 3EQQA 2DE6D 2ZYLA 5KLIC 5KKZC 4AIVA 4NBDD 4EMJB 1NTZE 1VM9A 3VMGD 2FYNC 5BOKA 1O7WA 3GZYA 1EZVE 2YVJB 2HMOA 2E74D 1BE3E 5CXMA 4H13D 2Q3WA 1UUVA 3L72E 1WQLA 2BCCE
chains in the Genus database with same CATH topology
3CXHE 4PV1D 2D2CD 3DQYA 2XSHA 1UUWA 4HM4A 4P1BH 3H1IE 3L74E 2B1XA 4NBHD 4AAYB 2BMQA 3L70E 2QJKC 4NBAD 3GOBA 2CKFA 2E76D 3VCPA 4HM2A 2HMNA 3H1KE 4H44D 3VMID 2NWFA 3AZCA 1O7NA 3EN1A 1JM1A 4P1CH 2A06E 1SQQE 2XSOA 2QJPC 1Q90C 4NBGD 1SQBE 2I7FA 4HM3A 4NB9D 1PPJE 4QDDA 1L0NE 2BMOA 1VCKA 3N0QA 2HMLA 5KLVE 1O7PA 4HM8A 1ULIA 2YFLA 4QDFB 2B24A 3GL2A 4QDFA 1PP9E 1L0LE 4HM1A 2HMJA 3GB4A 2JO6A 3GTSA 4QDCA 2DE7D 4H0LD 1ZRTE 4HM5A 2E75D 2DE5D 3BCCE 3H1LE 1O7GA 2E4PA 3CX5E 5AEUA 2HMKA 1KB9E 4NBED 2NUKA 1VF5D 2IBZE 1SQVE 3GCEA 2YFIA 2FYUE 3VCAA 1O7HA 3GKEA 1NTKE 2BMRA 3VMHD 4QUPA 4HM6A 2YFJA 1EG9A 3C0DA 1NU1E 1BCCE 4OGQD 3L73E 3GL0A 4NBCD 3H1JE 2QPZA 4HKVA 3L71E 3GTEA 2NUMA 4QURA 2ZT9D 3D89A 4HM0A 2XRXA 2YIUC 4U3FE 2NVGA 3TGUE 1SJGA 1KYOE 2NVFA 2QJYC 1NYKA 3GZXA 5HL4A 1NDOA 5AEWA 3L75E 2E4QA 2HMMA 2GBWA 4QUQA 1FQTA 2GBXA 4NB8D 1SQPE 3FOUA 1P84E 1RIEA 1SQXE 2JZAA 4HJLA 4HM7A 1ULJA 4NBFD 1RFSA 4QCKA 2XR8A 1NTME 1G8JB 3CWBE 2NVEA 3H1HE 4PD4E 1O7MA 1G8KB 4NBBD 3EQQA 2DE6D 2ZYLA 5KLIC 5KKZC 4AIVA 4NBDD 4EMJB 1NTZE 1VM9A 3VMGD 2FYNC 5BOKA 1O7WA 3GZYA 1EZVE 2YVJB 2HMOA 2E74D 1BE3E 5CXMA 4H13D 2Q3WA 1UUVA 3L72E 1WQLA 2BCCE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CXH E;  4PV1 D;  2D2C D;  3DQY A;  2XSH A;  1UUW A;  4HM4 A;  4P1B H;  3H1I E;  3L74 E;  2B1X A;  4NBH D;  4AAY B;  2BMQ A;  3L70 E;  2QJK C;  4NBA D;  3GOB A;  2CKF A;  2E76 D;  3VCP A;  4HM2 A;  2HMN A;  3H1K E;  4H44 D;  3VMI D;  2NWF A;  3AZC A;  1O7N A;  3EN1 A;  1JM1 A;  4P1C H;  2A06 E;  1SQQ E;  2XSO A;  2QJP C;  1Q90 C;  4NBG D;  1SQB E;  2I7F A;  4HM3 A;  4NB9 D;  1PPJ E;  4QDD A;  1L0N E;  2BMO A;  1VCK A;  3N0Q A;  2HML A;  5KLV E;  1O7P A;  4HM8 A;  1ULI A;  2YFL A;  4QDF B;  2B24 A;  3GL2 A;  4QDF A;  1PP9 E;  1L0L E;  4HM1 A;  2HMJ A;  3GB4 A;  2JO6 A;  3GTS A;  4QDC A;  2DE7 D;  4H0L D;  1ZRT E;  4HM5 A;  2E75 D;  2DE5 D;  3BCC E;  3H1L E;  1O7G A;  2E4P A;  3CX5 E;  5AEU A;  2HMK A;  1KB9 E;  4NBE D;  2NUK A;  1VF5 D;  2IBZ E;  1SQV E;  3GCE A;  2YFI A;  2FYU E;  3VCA A;  1O7H A;  3GKE A;  1NTK E;  2BMR A;  3VMH D;  4QUP A;  4HM6 A;  2YFJ A;  1EG9 A;  3C0D A;  1NU1 E;  1BCC E;  4OGQ D;  3L73 E;  3GL0 A;  4NBC D;  3H1J E;  2QPZ A;  4HKV A;  3L71 E;  3GTE A;  2NUM A;  4QUR A;  2ZT9 D;  3D89 A;  4HM0 A;  2XRX A;  2YIU C;  4U3F E;  2NVG A;  3TGU E;  1SJG A;  1KYO E;  2NVF A;  2QJY C;  1NYK A;  3GZX A;  5HL4 A;  1NDO A;  5AEW A;  3L75 E;  2E4Q A;  2HMM A;  2GBW A;  4QUQ A;  1FQT A;  2GBX A;  4NB8 D;  1SQP E;  3FOU A;  1P84 E;  1RIE A;  1SQX E;  2JZA A;  4HJL A;  4HM7 A;  1ULJ A;  4NBF D;  1RFS A;  4QCK A;  2XR8 A;  1NTM E;  1G8J B;  3CWB E;  2NVE A;  3H1H E;  4PD4 E;  1O7M A;  1G8K B;  4NBB D;  3EQQ A;  2DE6 D;  2ZYL A;  5KLI C;  5KKZ C;  4AIV A;  4NBD D;  4EMJ B;  1NTZ E;  1VM9 A;  3VMG D;  2FYN C;  5BOK A;  1O7W A;  3GZY A;  1EZV E;  2YVJ B;  2HMO A;  2E74 D;  1BE3 E;  5CXM A;  4H13 D;  2Q3W A;  1UUV A;  3L72 E;  1WQL A;  2BCC E; 
#chains in the Genus database with same CATH topology
 3CXH E;  4PV1 D;  2D2C D;  3DQY A;  2XSH A;  1UUW A;  4HM4 A;  4P1B H;  3H1I E;  3L74 E;  2B1X A;  4NBH D;  4AAY B;  2BMQ A;  3L70 E;  2QJK C;  4NBA D;  3GOB A;  2CKF A;  2E76 D;  3VCP A;  4HM2 A;  2HMN A;  3H1K E;  4H44 D;  3VMI D;  2NWF A;  3AZC A;  1O7N A;  3EN1 A;  1JM1 A;  4P1C H;  2A06 E;  1SQQ E;  2XSO A;  2QJP C;  1Q90 C;  4NBG D;  1SQB E;  2I7F A;  4HM3 A;  4NB9 D;  1PPJ E;  4QDD A;  1L0N E;  2BMO A;  1VCK A;  3N0Q A;  2HML A;  5KLV E;  1O7P A;  4HM8 A;  1ULI A;  2YFL A;  4QDF B;  2B24 A;  3GL2 A;  4QDF A;  1PP9 E;  1L0L E;  4HM1 A;  2HMJ A;  3GB4 A;  2JO6 A;  3GTS A;  4QDC A;  2DE7 D;  4H0L D;  1ZRT E;  4HM5 A;  2E75 D;  2DE5 D;  3BCC E;  3H1L E;  1O7G A;  2E4P A;  3CX5 E;  5AEU A;  2HMK A;  1KB9 E;  4NBE D;  2NUK A;  1VF5 D;  2IBZ E;  1SQV E;  3GCE A;  2YFI A;  2FYU E;  3VCA A;  1O7H A;  3GKE A;  1NTK E;  2BMR A;  3VMH D;  4QUP A;  4HM6 A;  2YFJ A;  1EG9 A;  3C0D A;  1NU1 E;  1BCC E;  4OGQ D;  3L73 E;  3GL0 A;  4NBC D;  3H1J E;  2QPZ A;  4HKV A;  3L71 E;  3GTE A;  2NUM A;  4QUR A;  2ZT9 D;  3D89 A;  4HM0 A;  2XRX A;  2YIU C;  4U3F E;  2NVG A;  3TGU E;  1SJG A;  1KYO E;  2NVF A;  2QJY C;  1NYK A;  3GZX A;  5HL4 A;  1NDO A;  5AEW A;  3L75 E;  2E4Q A;  2HMM A;  2GBW A;  4QUQ A;  1FQT A;  2GBX A;  4NB8 D;  1SQP E;  3FOU A;  1P84 E;  1RIE A;  1SQX E;  2JZA A;  4HJL A;  4HM7 A;  1ULJ A;  4NBF D;  1RFS A;  4QCK A;  2XR8 A;  1NTM E;  1G8J B;  3CWB E;  2NVE A;  3H1H E;  4PD4 E;  1O7M A;  1G8K B;  4NBB D;  3EQQ A;  2DE6 D;  2ZYL A;  5KLI C;  5KKZ C;  4AIV A;  4NBD D;  4EMJ B;  1NTZ E;  1VM9 A;  3VMG D;  2FYN C;  5BOK A;  1O7W A;  3GZY A;  1EZV E;  2YVJ B;  2HMO A;  2E74 D;  1BE3 E;  5CXM A;  4H13 D;  2Q3W A;  1UUV A;  3L72 E;  1WQL A;  2BCC E; 
#chains in the Genus database with same CATH homology
 3CXH E;  4PV1 D;  2D2C D;  3DQY A;  2XSH A;  1UUW A;  4HM4 A;  4P1B H;  3H1I E;  3L74 E;  2B1X A;  4NBH D;  4AAY B;  2BMQ A;  3L70 E;  2QJK C;  4NBA D;  3GOB A;  2CKF A;  2E76 D;  3VCP A;  4HM2 A;  2HMN A;  3H1K E;  4H44 D;  3VMI D;  2NWF A;  3AZC A;  1O7N A;  3EN1 A;  1JM1 A;  4P1C H;  2A06 E;  1SQQ E;  2XSO A;  2QJP C;  1Q90 C;  4NBG D;  1SQB E;  2I7F A;  4HM3 A;  4NB9 D;  1PPJ E;  4QDD A;  1L0N E;  2BMO A;  1VCK A;  3N0Q A;  2HML A;  5KLV E;  1O7P A;  4HM8 A;  1ULI A;  2YFL A;  4QDF B;  2B24 A;  3GL2 A;  4QDF A;  1PP9 E;  1L0L E;  4HM1 A;  2HMJ A;  3GB4 A;  2JO6 A;  3GTS A;  4QDC A;  2DE7 D;  4H0L D;  1ZRT E;  4HM5 A;  2E75 D;  2DE5 D;  3BCC E;  3H1L E;  1O7G A;  2E4P A;  3CX5 E;  5AEU A;  2HMK A;  1KB9 E;  4NBE D;  2NUK A;  1VF5 D;  2IBZ E;  1SQV E;  3GCE A;  2YFI A;  2FYU E;  3VCA A;  1O7H A;  3GKE A;  1NTK E;  2BMR A;  3VMH D;  4QUP A;  4HM6 A;  2YFJ A;  1EG9 A;  3C0D A;  1NU1 E;  1BCC E;  4OGQ D;  3L73 E;  3GL0 A;  4NBC D;  3H1J E;  2QPZ A;  4HKV A;  3L71 E;  3GTE A;  2NUM A;  4QUR A;  2ZT9 D;  3D89 A;  4HM0 A;  2XRX A;  2YIU C;  4U3F E;  2NVG A;  3TGU E;  1SJG A;  1KYO E;  2NVF A;  2QJY C;  1NYK A;  3GZX A;  5HL4 A;  1NDO A;  5AEW A;  3L75 E;  2E4Q A;  2HMM A;  2GBW A;  4QUQ A;  1FQT A;  2GBX A;  4NB8 D;  1SQP E;  3FOU A;  1P84 E;  1RIE A;  1SQX E;  2JZA A;  4HJL A;  4HM7 A;  1ULJ A;  4NBF D;  1RFS A;  4QCK A;  2XR8 A;  1NTM E;  1G8J B;  3CWB E;  2NVE A;  3H1H E;  4PD4 E;  1O7M A;  1G8K B;  4NBB D;  3EQQ A;  2DE6 D;  2ZYL A;  5KLI C;  5KKZ C;  4AIV A;  4NBD D;  4EMJ B;  1NTZ E;  1VM9 A;  3VMG D;  2FYN C;  5BOK A;  1O7W A;  3GZY A;  1EZV E;  2YVJ B;  2HMO A;  2E74 D;  1BE3 E;  5CXM A;  4H13 D;  2Q3W A;  1UUV A;  3L72 E;  1WQL A;  2BCC E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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