2E7RA

Crystal structure of glu54 to arg mutant of diphthine synthase
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKRIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e7rA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e7rA01
3FFYA 1S4DA 2EHLA 1VA0A 1WNGA 1V9AA 2ED3A 3HH1A 2HUVA 2PCGA 2P6DA 5HW4A 2EK3A 2EL2A 2EGBA 4E16A 2E8RA 2BB3A 2DXWA 2E4NA 2EEQA 2PCMA 2E07A 2P9DA 2E8HA 3KWPA 2EH2A 2P5FA 2EL0A 3NDCA 2DV7A 2P6IA 1WYZA 3NUTA 2QBUA 1PJTA 2P2XA 3NEIA 2E0NA 2YBOA 2EH5A 2DSIA 2Z6RA 2P6LA 1WDEA 2EN5A 2PCIA 2ELDA 2PB4A 2ZVBA 1PJSA 2DV4A 2E7RA 2CBFA 1VE2A 2P5CA 2YBQA 2DXVA 2EJZA 2OWKA 2PCKA 2ED5A 2PCAA 2E8QA 3FQ6A 2OWUA 2EKAA 2ELEA 2EJJA 2EK7A 2P6KA 2HUQA 1CBFA 2E4RA 2E0KA 2E15A 2EMRA 2OWGA 2DV3A 1VHVA 2EK2A 2DV5A 2ENIA 2HUXA 2EMUA 2E16A 2HR8A 2EGSA 2DSGA 2E17A 2E8SA 2DXXA 3I4TA 1VCEA 2EH4A 2OWFA 2EL1A 2EHCA 2NPNA 2EGLA 2DEKA 2PB5A 2DSHA 3ND1A 2HUTA 2PCHA 2PB6A 2ZVCA 2OWVA 2EK4A 2EL3A 2EJKA 2E08A 1PJQA
chains in the Genus database with same CATH superfamily
3FFYA 1S4DA 3SZUA 2EHLA 4H4EA 1VA0A 1WNGA 1V9AA 2ED3A 3HH1A 2HUVA 3TIXB 2PCGA 3LMMA 2P6DA 5HW4A 2EK3A 3UWMA 2EL2A 3KE8A 2EGBA 3T0FA 4E16A 2E8RA 3UV3A 4EB3A 2BB3A 2DXWA 2E4NA 2EEQA 3KEFA 2PCMA 2E07A 2P9DA 2E8HA 3KWPA 2EH2A 2P5FA 3T0GA 2EL0A 3NDCA 2DV7A 2P6IA 1WYZA 3KE9A 3NUTA 2QBUA 1PJTA 2P2XA 3NEIA 2E0NA 2YBOA 2EH5A 2DSIA 4MV0A 3UV7A 3UTDA 2Z6RA 2P6LA 1WDEA 2EN5A 3SZLA 2PCIA 2ELDA 4MUXA 2PB4A 2ZVBA 3ZGLA 1PJSA 2DV4A 2E7RA 3F7TA 4MV5A 2CBFA 1VE2A 2P5CA 2YBQA 2DXVA 2EJZA 2OWKA 2PCKA 2ED5A 2PCAA 2E8QA 4MUYA 4H4DA 3FQ6A 2OWUA 2EKAA 2ELEA 2EJJA 2EK7A 2P6KA 2HUQA 1CBFA 2E4RA 2E0KA 2E15A 2EMRA 2OWGA 3KEMA 2DV3A 1VHVA 2EK2A 2DV5A 2ENIA 4N7BA 2HUXA 2EMUA 3UV6A 2E16A 2HR8A 2EGSA 2DSGA 2E17A 2KYYA 2E8SA 2DXXA 3KELA 3I4TA 1VCEA 2EH4A 2OWFA 3DNFA 2EL1A 4H4CA 2EHCA 2NPNA 2EGLA 3ZGNA 2DEKA 2PB5A 2DSHA 3ND1A 2HUTA 2PCHA 2PB6A 3URKA 3UTCA 2ZVCA 2OWVA 3SZOA 2EK4A 2EL3A 2EJKA 2E08A 1PJQA
chains in the Genus database with same CATH topology
3FFYA 1S4DA 3SZUA 2EHLA 4H4EA 1VA0A 1WNGA 1V9AA 2ED3A 3HH1A 2HUVA 3TIXB 2PCGA 3LMMA 2P6DA 5HW4A 2EK3A 3UWMA 2EL2A 3KE8A 2EGBA 3T0FA 4E16A 2E8RA 3UV3A 4EB3A 2BB3A 2DXWA 2E4NA 2EEQA 3KEFA 2PCMA 2E07A 2P9DA 2E8HA 3KWPA 2EH2A 2P5FA 3T0GA 2EL0A 3NDCA 2DV7A 2P6IA 1WYZA 3KE9A 3NUTA 2QBUA 1PJTA 2P2XA 3NEIA 2E0NA 2YBOA 2EH5A 2DSIA 4MV0A 3UV7A 3UTDA 2Z6RA 2P6LA 1WDEA 2EN5A 3SZLA 2PCIA 2ELDA 4MUXA 2PB4A 2ZVBA 3ZGLA 1PJSA 2DV4A 2E7RA 3F7TA 4MV5A 2CBFA 1VE2A 2P5CA 2YBQA 2DXVA 2EJZA 2OWKA 2PCKA 2ED5A 2PCAA 2E8QA 4MUYA 4H4DA 3FQ6A 2OWUA 2EKAA 2ELEA 2EJJA 2EK7A 2P6KA 2HUQA 1CBFA 2E4RA 2E0KA 2E15A 2EMRA 2OWGA 3KEMA 2DV3A 1VHVA 2EK2A 2DV5A 2ENIA 4N7BA 2HUXA 2EMUA 3UV6A 2E16A 2HR8A 2EGSA 2DSGA 2E17A 2KYYA 2E8SA 2DXXA 3KELA 3I4TA 1VCEA 2EH4A 2OWFA 3DNFA 2EL1A 4H4CA 2EHCA 2NPNA 2EGLA 3ZGNA 2DEKA 2PB5A 2DSHA 3ND1A 2HUTA 2PCHA 2PB6A 3URKA 3UTCA 2ZVCA 2OWVA 3SZOA 2EK4A 2EL3A 2EJKA 2E08A 1PJQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FFY A;  1S4D A;  2EHL A;  1VA0 A;  1WNG A;  1V9A A;  2ED3 A;  3HH1 A;  2HUV A;  2PCG A;  2P6D A;  5HW4 A;  2EK3 A;  2EL2 A;  2EGB A;  4E16 A;  2E8R A;  2BB3 A;  2DXW A;  2E4N A;  2EEQ A;  2PCM A;  2E07 A;  2P9D A;  2E8H A;  3KWP A;  2EH2 A;  2P5F A;  2EL0 A;  3NDC A;  2DV7 A;  2P6I A;  1WYZ A;  3NUT A;  2QBU A;  1PJT A;  2P2X A;  3NEI A;  2E0N A;  2YBO A;  2EH5 A;  2DSI A;  2Z6R A;  2P6L A;  1WDE A;  2EN5 A;  2PCI A;  2ELD A;  2PB4 A;  2ZVB A;  1PJS A;  2DV4 A;  2E7R A;  2CBF A;  1VE2 A;  2P5C A;  2YBQ A;  2DXV A;  2EJZ A;  2OWK A;  2PCK A;  2ED5 A;  2PCA A;  2E8Q A;  3FQ6 A;  2OWU A;  2EKA A;  2ELE A;  2EJJ A;  2EK7 A;  2P6K A;  2HUQ A;  1CBF A;  2E4R A;  2E0K A;  2E15 A;  2EMR A;  2OWG A;  2DV3 A;  1VHV A;  2EK2 A;  2DV5 A;  2ENI A;  2HUX A;  2EMU A;  2E16 A;  2HR8 A;  2EGS A;  2DSG A;  2E17 A;  2E8S A;  2DXX A;  3I4T A;  1VCE A;  2EH4 A;  2OWF A;  2EL1 A;  2EHC A;  2NPN A;  2EGL A;  2DEK A;  2PB5 A;  2DSH A;  3ND1 A;  2HUT A;  2PCH A;  2PB6 A;  2ZVC A;  2OWV A;  2EK4 A;  2EL3 A;  2EJK A;  2E08 A;  1PJQ A; 
#chains in the Genus database with same CATH topology
 3FFY A;  1S4D A;  3SZU A;  2EHL A;  4H4E A;  1VA0 A;  1WNG A;  1V9A A;  2ED3 A;  3HH1 A;  2HUV A;  3TIX B;  2PCG A;  3LMM A;  2P6D A;  5HW4 A;  2EK3 A;  3UWM A;  2EL2 A;  3KE8 A;  2EGB A;  3T0F A;  4E16 A;  2E8R A;  3UV3 A;  4EB3 A;  2BB3 A;  2DXW A;  2E4N A;  2EEQ A;  3KEF A;  2PCM A;  2E07 A;  2P9D A;  2E8H A;  3KWP A;  2EH2 A;  2P5F A;  3T0G A;  2EL0 A;  3NDC A;  2DV7 A;  2P6I A;  1WYZ A;  3KE9 A;  3NUT A;  2QBU A;  1PJT A;  2P2X A;  3NEI A;  2E0N A;  2YBO A;  2EH5 A;  2DSI A;  4MV0 A;  3UV7 A;  3UTD A;  2Z6R A;  2P6L A;  1WDE A;  2EN5 A;  3SZL A;  2PCI A;  2ELD A;  4MUX A;  2PB4 A;  2ZVB A;  3ZGL A;  1PJS A;  2DV4 A;  2E7R A;  3F7T A;  4MV5 A;  2CBF A;  1VE2 A;  2P5C A;  2YBQ A;  2DXV A;  2EJZ A;  2OWK A;  2PCK A;  2ED5 A;  2PCA A;  2E8Q A;  4MUY A;  4H4D A;  3FQ6 A;  2OWU A;  2EKA A;  2ELE A;  2EJJ A;  2EK7 A;  2P6K A;  2HUQ A;  1CBF A;  2E4R A;  2E0K A;  2E15 A;  2EMR A;  2OWG A;  3KEM A;  2DV3 A;  1VHV A;  2EK2 A;  2DV5 A;  2ENI A;  4N7B A;  2HUX A;  2EMU A;  3UV6 A;  2E16 A;  2HR8 A;  2EGS A;  2DSG A;  2E17 A;  2KYY A;  2E8S A;  2DXX A;  3KEL A;  3I4T A;  1VCE A;  2EH4 A;  2OWF A;  3DNF A;  2EL1 A;  4H4C A;  2EHC A;  2NPN A;  2EGL A;  3ZGN A;  2DEK A;  2PB5 A;  2DSH A;  3ND1 A;  2HUT A;  2PCH A;  2PB6 A;  3URK A;  3UTC A;  2ZVC A;  2OWV A;  3SZO A;  2EK4 A;  2EL3 A;  2EJK A;  2E08 A;  1PJQ A; 
#chains in the Genus database with same CATH homology
 3FFY A;  1S4D A;  3SZU A;  2EHL A;  4H4E A;  1VA0 A;  1WNG A;  1V9A A;  2ED3 A;  3HH1 A;  2HUV A;  3TIX B;  2PCG A;  3LMM A;  2P6D A;  5HW4 A;  2EK3 A;  3UWM A;  2EL2 A;  3KE8 A;  2EGB A;  3T0F A;  4E16 A;  2E8R A;  3UV3 A;  4EB3 A;  2BB3 A;  2DXW A;  2E4N A;  2EEQ A;  3KEF A;  2PCM A;  2E07 A;  2P9D A;  2E8H A;  3KWP A;  2EH2 A;  2P5F A;  3T0G A;  2EL0 A;  3NDC A;  2DV7 A;  2P6I A;  1WYZ A;  3KE9 A;  3NUT A;  2QBU A;  1PJT A;  2P2X A;  3NEI A;  2E0N A;  2YBO A;  2EH5 A;  2DSI A;  4MV0 A;  3UV7 A;  3UTD A;  2Z6R A;  2P6L A;  1WDE A;  2EN5 A;  3SZL A;  2PCI A;  2ELD A;  4MUX A;  2PB4 A;  2ZVB A;  3ZGL A;  1PJS A;  2DV4 A;  2E7R A;  3F7T A;  4MV5 A;  2CBF A;  1VE2 A;  2P5C A;  2YBQ A;  2DXV A;  2EJZ A;  2OWK A;  2PCK A;  2ED5 A;  2PCA A;  2E8Q A;  4MUY A;  4H4D A;  3FQ6 A;  2OWU A;  2EKA A;  2ELE A;  2EJJ A;  2EK7 A;  2P6K A;  2HUQ A;  1CBF A;  2E4R A;  2E0K A;  2E15 A;  2EMR A;  2OWG A;  3KEM A;  2DV3 A;  1VHV A;  2EK2 A;  2DV5 A;  2ENI A;  4N7B A;  2HUX A;  2EMU A;  3UV6 A;  2E16 A;  2HR8 A;  2EGS A;  2DSG A;  2E17 A;  2KYY A;  2E8S A;  2DXX A;  3KEL A;  3I4T A;  1VCE A;  2EH4 A;  2OWF A;  3DNF A;  2EL1 A;  4H4C A;  2EHC A;  2NPN A;  2EGL A;  3ZGN A;  2DEK A;  2PB5 A;  2DSH A;  3ND1 A;  2HUT A;  2PCH A;  2PB6 A;  3URK A;  3UTC A;  2ZVC A;  2OWV A;  3SZO A;  2EK4 A;  2EL3 A;  2EJK A;  2E08 A;  1PJQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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