2E8HA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLMFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8hA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8hA01
3NUTA 2DV4A 3ND1A 2HR8A 2E8QA 2P6DA 2YBOA 2DSIA 2EN5A 2P6IA 1WYZA 2E4NA 2PB5A 1VHVA 3KWPA 2EJJA 2E16A 2EGBA 2P5CA 2OWFA 3HH1A 2E8SA 1VCEA 2PCMA 2EK3A 2EKAA 3FFYA 2E4RA 2EEQA 1VA0A 2HUXA 2EL2A 2ELEA 3NDCA 2NPNA 2E08A 2E07A 4E16A 5HW4A 2OWKA 2ZVCA 2QBUA 2E7RA 2PB6A 2EH5A 2OWVA 2EK7A 2EK2A 2E17A 1V9AA 1PJTA 1PJQA 2EK4A 2E0NA 2PB4A 1CBFA 2P9DA 2DXVA 2EHCA 2CBFA 2OWUA 2EL1A 2DV5A 2ENIA 3I4TA 3FQ6A 2P5FA 2EMUA 2DV3A 2DSGA 2P2XA 2BB3A 1PJSA 2ED5A 3NEIA 2E0KA 2ELDA 2EGSA 2OWGA 2EGLA 2EJKA 2DSHA 2DXXA 1VE2A 2YBQA 2ZVBA 2DV7A 2DEKA 2PCIA 2P6LA 2E8RA 2E8HA 2HUVA 2EJZA 2HUQA 2P6KA 2PCHA 2Z6RA 1WDEA 2EMRA 2PCGA 2HUTA 2E15A 2EH2A 2PCKA 2ED3A 1WNGA 2EL0A 2PCAA 2DXWA 1S4DA 2EL3A 2EH4A 2EHLA
chains in the Genus database with same CATH superfamily
3NUTA 2DV4A 3ND1A 4H4EA 2HR8A 3LMMA 2E8QA 2P6DA 3URKA 2YBOA 2DSIA 2EN5A 2P6IA 4MV0A 1WYZA 2E4NA 3T0GA 4H4CA 2PB5A 4H4DA 1VHVA 3KWPA 2EJJA 2E16A 2EGBA 2P5CA 2OWFA 3F7TA 3KEMA 3HH1A 2E8SA 1VCEA 2PCMA 4MV5A 2EK3A 2EKAA 3FFYA 2E4RA 3UV6A 4EB3A 2EEQA 1VA0A 2HUXA 2EL2A 3UV3A 3ZGNA 4MUYA 2ELEA 3NDCA 2NPNA 2E08A 3UTDA 2E07A 3SZOA 4E16A 5HW4A 2OWKA 2ZVCA 2QBUA 2E7RA 3T0FA 2PB6A 4MUXA 2EH5A 2OWVA 3SZLA 2EK7A 2EK2A 2E17A 1V9AA 1PJTA 1PJQA 2EK4A 2E0NA 2PB4A 1CBFA 2P9DA 2DXVA 2EHCA 2CBFA 2OWUA 2EL1A 2DV5A 2ENIA 3DNFA 3I4TA 3FQ6A 2P5FA 2EMUA 2DV3A 2DSGA 3KE8A 2P2XA 3KELA 2BB3A 1PJSA 2ED5A 2KYYA 3NEIA 3UV7A 2E0KA 2ELDA 2EGSA 2OWGA 2EGLA 2EJKA 2DSHA 2DXXA 3UWMA 3KEFA 1VE2A 2YBQA 2ZVBA 2DV7A 2DEKA 3TIXB 2PCIA 2P6LA 2E8RA 2E8HA 2HUVA 2EJZA 2HUQA 2P6KA 2PCHA 2Z6RA 1WDEA 2EMRA 2PCGA 2HUTA 2E15A 3SZUA 2EH2A 3ZGLA 2PCKA 2ED3A 1WNGA 3KE9A 2EL0A 4N7BA 3UTCA 2PCAA 2DXWA 1S4DA 2EL3A 2EH4A 2EHLA
chains in the Genus database with same CATH topology
3NUTA 2DV4A 3ND1A 4H4EA 2HR8A 3LMMA 2E8QA 2P6DA 3URKA 2YBOA 2DSIA 2EN5A 2P6IA 4MV0A 1WYZA 2E4NA 3T0GA 4H4CA 2PB5A 4H4DA 1VHVA 3KWPA 2EJJA 2E16A 2EGBA 2P5CA 2OWFA 3F7TA 3KEMA 3HH1A 2E8SA 1VCEA 2PCMA 4MV5A 2EK3A 2EKAA 3FFYA 2E4RA 3UV6A 4EB3A 2EEQA 1VA0A 2HUXA 2EL2A 3UV3A 3ZGNA 4MUYA 2ELEA 3NDCA 2NPNA 2E08A 3UTDA 2E07A 3SZOA 4E16A 5HW4A 2OWKA 2ZVCA 2QBUA 2E7RA 3T0FA 2PB6A 4MUXA 2EH5A 2OWVA 3SZLA 2EK7A 2EK2A 2E17A 1V9AA 1PJTA 1PJQA 2EK4A 2E0NA 2PB4A 1CBFA 2P9DA 2DXVA 2EHCA 2CBFA 2OWUA 2EL1A 2DV5A 2ENIA 3DNFA 3I4TA 3FQ6A 2P5FA 2EMUA 2DV3A 2DSGA 3KE8A 2P2XA 3KELA 2BB3A 1PJSA 2ED5A 2KYYA 3NEIA 3UV7A 2E0KA 2ELDA 2EGSA 2OWGA 2EGLA 2EJKA 2DSHA 2DXXA 3UWMA 3KEFA 1VE2A 2YBQA 2ZVBA 2DV7A 2DEKA 3TIXB 2PCIA 2P6LA 2E8RA 2E8HA 2HUVA 2EJZA 2HUQA 2P6KA 2PCHA 2Z6RA 1WDEA 2EMRA 2PCGA 2HUTA 2E15A 3SZUA 2EH2A 3ZGLA 2PCKA 2ED3A 1WNGA 3KE9A 2EL0A 4N7BA 3UTCA 2PCAA 2DXWA 1S4DA 2EL3A 2EH4A 2EHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NUT A;  2DV4 A;  3ND1 A;  2HR8 A;  2E8Q A;  2P6D A;  2YBO A;  2DSI A;  2EN5 A;  2P6I A;  1WYZ A;  2E4N A;  2PB5 A;  1VHV A;  3KWP A;  2EJJ A;  2E16 A;  2EGB A;  2P5C A;  2OWF A;  3HH1 A;  2E8S A;  1VCE A;  2PCM A;  2EK3 A;  2EKA A;  3FFY A;  2E4R A;  2EEQ A;  1VA0 A;  2HUX A;  2EL2 A;  2ELE A;  3NDC A;  2NPN A;  2E08 A;  2E07 A;  4E16 A;  5HW4 A;  2OWK A;  2ZVC A;  2QBU A;  2E7R A;  2PB6 A;  2EH5 A;  2OWV A;  2EK7 A;  2EK2 A;  2E17 A;  1V9A A;  1PJT A;  1PJQ A;  2EK4 A;  2E0N A;  2PB4 A;  1CBF A;  2P9D A;  2DXV A;  2EHC A;  2CBF A;  2OWU A;  2EL1 A;  2DV5 A;  2ENI A;  3I4T A;  3FQ6 A;  2P5F A;  2EMU A;  2DV3 A;  2DSG A;  2P2X A;  2BB3 A;  1PJS A;  2ED5 A;  3NEI A;  2E0K A;  2ELD A;  2EGS A;  2OWG A;  2EGL A;  2EJK A;  2DSH A;  2DXX A;  1VE2 A;  2YBQ A;  2ZVB A;  2DV7 A;  2DEK A;  2PCI A;  2P6L A;  2E8R A;  2E8H A;  2HUV A;  2EJZ A;  2HUQ A;  2P6K A;  2PCH A;  2Z6R A;  1WDE A;  2EMR A;  2PCG A;  2HUT A;  2E15 A;  2EH2 A;  2PCK A;  2ED3 A;  1WNG A;  2EL0 A;  2PCA A;  2DXW A;  1S4D A;  2EL3 A;  2EH4 A;  2EHL A; 
#chains in the Genus database with same CATH topology
 3NUT A;  2DV4 A;  3ND1 A;  4H4E A;  2HR8 A;  3LMM A;  2E8Q A;  2P6D A;  3URK A;  2YBO A;  2DSI A;  2EN5 A;  2P6I A;  4MV0 A;  1WYZ A;  2E4N A;  3T0G A;  4H4C A;  2PB5 A;  4H4D A;  1VHV A;  3KWP A;  2EJJ A;  2E16 A;  2EGB A;  2P5C A;  2OWF A;  3F7T A;  3KEM A;  3HH1 A;  2E8S A;  1VCE A;  2PCM A;  4MV5 A;  2EK3 A;  2EKA A;  3FFY A;  2E4R A;  3UV6 A;  4EB3 A;  2EEQ A;  1VA0 A;  2HUX A;  2EL2 A;  3UV3 A;  3ZGN A;  4MUY A;  2ELE A;  3NDC A;  2NPN A;  2E08 A;  3UTD A;  2E07 A;  3SZO A;  4E16 A;  5HW4 A;  2OWK A;  2ZVC A;  2QBU A;  2E7R A;  3T0F A;  2PB6 A;  4MUX A;  2EH5 A;  2OWV A;  3SZL A;  2EK7 A;  2EK2 A;  2E17 A;  1V9A A;  1PJT A;  1PJQ A;  2EK4 A;  2E0N A;  2PB4 A;  1CBF A;  2P9D A;  2DXV A;  2EHC A;  2CBF A;  2OWU A;  2EL1 A;  2DV5 A;  2ENI A;  3DNF A;  3I4T A;  3FQ6 A;  2P5F A;  2EMU A;  2DV3 A;  2DSG A;  3KE8 A;  2P2X A;  3KEL A;  2BB3 A;  1PJS A;  2ED5 A;  2KYY A;  3NEI A;  3UV7 A;  2E0K A;  2ELD A;  2EGS A;  2OWG A;  2EGL A;  2EJK A;  2DSH A;  2DXX A;  3UWM A;  3KEF A;  1VE2 A;  2YBQ A;  2ZVB A;  2DV7 A;  2DEK A;  3TIX B;  2PCI A;  2P6L A;  2E8R A;  2E8H A;  2HUV A;  2EJZ A;  2HUQ A;  2P6K A;  2PCH A;  2Z6R A;  1WDE A;  2EMR A;  2PCG A;  2HUT A;  2E15 A;  3SZU A;  2EH2 A;  3ZGL A;  2PCK A;  2ED3 A;  1WNG A;  3KE9 A;  2EL0 A;  4N7B A;  3UTC A;  2PCA A;  2DXW A;  1S4D A;  2EL3 A;  2EH4 A;  2EHL A; 
#chains in the Genus database with same CATH homology
 3NUT A;  2DV4 A;  3ND1 A;  4H4E A;  2HR8 A;  3LMM A;  2E8Q A;  2P6D A;  3URK A;  2YBO A;  2DSI A;  2EN5 A;  2P6I A;  4MV0 A;  1WYZ A;  2E4N A;  3T0G A;  4H4C A;  2PB5 A;  4H4D A;  1VHV A;  3KWP A;  2EJJ A;  2E16 A;  2EGB A;  2P5C A;  2OWF A;  3F7T A;  3KEM A;  3HH1 A;  2E8S A;  1VCE A;  2PCM A;  4MV5 A;  2EK3 A;  2EKA A;  3FFY A;  2E4R A;  3UV6 A;  4EB3 A;  2EEQ A;  1VA0 A;  2HUX A;  2EL2 A;  3UV3 A;  3ZGN A;  4MUY A;  2ELE A;  3NDC A;  2NPN A;  2E08 A;  3UTD A;  2E07 A;  3SZO A;  4E16 A;  5HW4 A;  2OWK A;  2ZVC A;  2QBU A;  2E7R A;  3T0F A;  2PB6 A;  4MUX A;  2EH5 A;  2OWV A;  3SZL A;  2EK7 A;  2EK2 A;  2E17 A;  1V9A A;  1PJT A;  1PJQ A;  2EK4 A;  2E0N A;  2PB4 A;  1CBF A;  2P9D A;  2DXV A;  2EHC A;  2CBF A;  2OWU A;  2EL1 A;  2DV5 A;  2ENI A;  3DNF A;  3I4T A;  3FQ6 A;  2P5F A;  2EMU A;  2DV3 A;  2DSG A;  3KE8 A;  2P2X A;  3KEL A;  2BB3 A;  1PJS A;  2ED5 A;  2KYY A;  3NEI A;  3UV7 A;  2E0K A;  2ELD A;  2EGS A;  2OWG A;  2EGL A;  2EJK A;  2DSH A;  2DXX A;  3UWM A;  3KEF A;  1VE2 A;  2YBQ A;  2ZVB A;  2DV7 A;  2DEK A;  3TIX B;  2PCI A;  2P6L A;  2E8R A;  2E8H A;  2HUV A;  2EJZ A;  2HUQ A;  2P6K A;  2PCH A;  2Z6R A;  1WDE A;  2EMR A;  2PCG A;  2HUT A;  2E15 A;  3SZU A;  2EH2 A;  3ZGL A;  2PCK A;  2ED3 A;  1WNG A;  3KE9 A;  2EL0 A;  4N7B A;  3UTC A;  2PCA A;  2DXW A;  1S4D A;  2EL3 A;  2EH4 A;  2EHL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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