2E8HA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLMFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8hA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8hA01
2E17A 2EL2A 2HUQA 2DSGA 2P6LA 2EH5A 2P6KA 2HUVA 2EN5A 2PCGA 2E4RA 2E0KA 2ELEA 2OWKA 2EEQA 2BB3A 2ELDA 2EL3A 2P6IA 2QBUA 2ED5A 2OWFA 2DSHA 2EL0A 2OWUA 2HUTA 2P9DA 2OWVA 2EGBA 2HR8A 5HW4A 2E8SA 2DEKA 2DV3A 2E8QA 2P6DA 2CBFA 2PB6A 2EH2A 2E15A 2P5FA 2EGLA 2EHLA 2OWGA 3FQ6A 2PB5A 2EGSA 2Z6RA 1PJQA 1VA0A 2PCMA 1VHVA 2PCIA 2EL1A 2EJZA 2E07A 2DV5A 1VCEA 2EH4A 2EMUA 3NDCA 2EK2A 2EJKA 2PB4A 2ED3A 2YBQA 2NPNA 2DXVA 1PJTA 2P2XA 2YBOA 3ND1A 1S4DA 2EKAA 1WNGA 2DV4A 2DSIA 2E08A 2DXWA 2PCKA 2E8RA 2ENIA 3NEIA 3HH1A 2PCAA 2E16A 1WYZA 4E16A 2P5CA 1V9AA 2EMRA 2HUXA 3FFYA 2E4NA 2PCHA 2EJJA 3I4TA 2E8HA 2EHCA 1CBFA 2E7RA 2ZVCA 2EK3A 2ZVBA 2E0NA 2EK7A 1VE2A 1PJSA 2DXXA 3KWPA 2EK4A 3NUTA 2DV7A 1WDEA
chains in the Genus database with same CATH superfamily
2E17A 2EL2A 2HUQA 2DSGA 3DNFA 2P6LA 2EH5A 2P6KA 2KYYA 3KELA 2HUVA 2EN5A 3T0GA 3UV3A 2PCGA 2E4RA 3ZGNA 2E0KA 2ELEA 2OWKA 4MV5A 2EEQA 2BB3A 4N7BA 3TIXB 2ELDA 2EL3A 2P6IA 2QBUA 2ED5A 2OWFA 2DSHA 2EL0A 2OWUA 2HUTA 2P9DA 3SZUA 2OWVA 2EGBA 2HR8A 5HW4A 2E8SA 2DEKA 2DV3A 4H4DA 3LMMA 2E8QA 2P6DA 2CBFA 4MV0A 2PB6A 2EH2A 2E15A 2P5FA 3SZOA 4MUYA 3KE9A 2EGLA 2EHLA 3KEMA 3UTCA 2OWGA 3FQ6A 3UWMA 2PB5A 2EGSA 2Z6RA 3URKA 1PJQA 1VA0A 2PCMA 1VHVA 2PCIA 2EL1A 2EJZA 2E07A 2DV5A 1VCEA 2EH4A 2EMUA 3NDCA 2EK2A 2EJKA 2PB4A 2ED3A 2YBQA 3UV6A 2NPNA 4H4CA 2DXVA 4EB3A 1PJTA 2P2XA 2YBOA 3ND1A 1S4DA 2EKAA 1WNGA 2DV4A 3SZLA 2DSIA 2E08A 2DXWA 3ZGLA 2PCKA 2E8RA 3F7TA 3T0FA 2ENIA 3NEIA 3HH1A 2PCAA 2E16A 1WYZA 4E16A 2P5CA 3UTDA 1V9AA 2EMRA 2HUXA 3FFYA 2E4NA 2PCHA 2EJJA 4H4EA 3I4TA 3KEFA 2E8HA 2EHCA 3UV7A 1CBFA 4MUXA 2E7RA 2ZVCA 2EK3A 2ZVBA 2E0NA 3KE8A 2EK7A 1VE2A 1PJSA 2DXXA 3KWPA 2EK4A 3NUTA 2DV7A 1WDEA
chains in the Genus database with same CATH topology
2E17A 2EL2A 2HUQA 2DSGA 3DNFA 2P6LA 2EH5A 2P6KA 2KYYA 3KELA 2HUVA 2EN5A 3T0GA 3UV3A 2PCGA 2E4RA 3ZGNA 2E0KA 2ELEA 2OWKA 4MV5A 2EEQA 2BB3A 4N7BA 3TIXB 2ELDA 2EL3A 2P6IA 2QBUA 2ED5A 2OWFA 2DSHA 2EL0A 2OWUA 2HUTA 2P9DA 3SZUA 2OWVA 2EGBA 2HR8A 5HW4A 2E8SA 2DEKA 2DV3A 4H4DA 3LMMA 2E8QA 2P6DA 2CBFA 4MV0A 2PB6A 2EH2A 2E15A 2P5FA 3SZOA 4MUYA 3KE9A 2EGLA 2EHLA 3KEMA 3UTCA 2OWGA 3FQ6A 3UWMA 2PB5A 2EGSA 2Z6RA 3URKA 1PJQA 1VA0A 2PCMA 1VHVA 2PCIA 2EL1A 2EJZA 2E07A 2DV5A 1VCEA 2EH4A 2EMUA 3NDCA 2EK2A 2EJKA 2PB4A 2ED3A 2YBQA 3UV6A 2NPNA 4H4CA 2DXVA 4EB3A 1PJTA 2P2XA 2YBOA 3ND1A 1S4DA 2EKAA 1WNGA 2DV4A 3SZLA 2DSIA 2E08A 2DXWA 3ZGLA 2PCKA 2E8RA 3F7TA 3T0FA 2ENIA 3NEIA 3HH1A 2PCAA 2E16A 1WYZA 4E16A 2P5CA 3UTDA 1V9AA 2EMRA 2HUXA 3FFYA 2E4NA 2PCHA 2EJJA 4H4EA 3I4TA 3KEFA 2E8HA 2EHCA 3UV7A 1CBFA 4MUXA 2E7RA 2ZVCA 2EK3A 2ZVBA 2E0NA 3KE8A 2EK7A 1VE2A 1PJSA 2DXXA 3KWPA 2EK4A 3NUTA 2DV7A 1WDEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E17 A;  2EL2 A;  2HUQ A;  2DSG A;  2P6L A;  2EH5 A;  2P6K A;  2HUV A;  2EN5 A;  2PCG A;  2E4R A;  2E0K A;  2ELE A;  2OWK A;  2EEQ A;  2BB3 A;  2ELD A;  2EL3 A;  2P6I A;  2QBU A;  2ED5 A;  2OWF A;  2DSH A;  2EL0 A;  2OWU A;  2HUT A;  2P9D A;  2OWV A;  2EGB A;  2HR8 A;  5HW4 A;  2E8S A;  2DEK A;  2DV3 A;  2E8Q A;  2P6D A;  2CBF A;  2PB6 A;  2EH2 A;  2E15 A;  2P5F A;  2EGL A;  2EHL A;  2OWG A;  3FQ6 A;  2PB5 A;  2EGS A;  2Z6R A;  1PJQ A;  1VA0 A;  2PCM A;  1VHV A;  2PCI A;  2EL1 A;  2EJZ A;  2E07 A;  2DV5 A;  1VCE A;  2EH4 A;  2EMU A;  3NDC A;  2EK2 A;  2EJK A;  2PB4 A;  2ED3 A;  2YBQ A;  2NPN A;  2DXV A;  1PJT A;  2P2X A;  2YBO A;  3ND1 A;  1S4D A;  2EKA A;  1WNG A;  2DV4 A;  2DSI A;  2E08 A;  2DXW A;  2PCK A;  2E8R A;  2ENI A;  3NEI A;  3HH1 A;  2PCA A;  2E16 A;  1WYZ A;  4E16 A;  2P5C A;  1V9A A;  2EMR A;  2HUX A;  3FFY A;  2E4N A;  2PCH A;  2EJJ A;  3I4T A;  2E8H A;  2EHC A;  1CBF A;  2E7R A;  2ZVC A;  2EK3 A;  2ZVB A;  2E0N A;  2EK7 A;  1VE2 A;  1PJS A;  2DXX A;  3KWP A;  2EK4 A;  3NUT A;  2DV7 A;  1WDE A; 
#chains in the Genus database with same CATH topology
 2E17 A;  2EL2 A;  2HUQ A;  2DSG A;  3DNF A;  2P6L A;  2EH5 A;  2P6K A;  2KYY A;  3KEL A;  2HUV A;  2EN5 A;  3T0G A;  3UV3 A;  2PCG A;  2E4R A;  3ZGN A;  2E0K A;  2ELE A;  2OWK A;  4MV5 A;  2EEQ A;  2BB3 A;  4N7B A;  3TIX B;  2ELD A;  2EL3 A;  2P6I A;  2QBU A;  2ED5 A;  2OWF A;  2DSH A;  2EL0 A;  2OWU A;  2HUT A;  2P9D A;  3SZU A;  2OWV A;  2EGB A;  2HR8 A;  5HW4 A;  2E8S A;  2DEK A;  2DV3 A;  4H4D A;  3LMM A;  2E8Q A;  2P6D A;  2CBF A;  4MV0 A;  2PB6 A;  2EH2 A;  2E15 A;  2P5F A;  3SZO A;  4MUY A;  3KE9 A;  2EGL A;  2EHL A;  3KEM A;  3UTC A;  2OWG A;  3FQ6 A;  3UWM A;  2PB5 A;  2EGS A;  2Z6R A;  3URK A;  1PJQ A;  1VA0 A;  2PCM A;  1VHV A;  2PCI A;  2EL1 A;  2EJZ A;  2E07 A;  2DV5 A;  1VCE A;  2EH4 A;  2EMU A;  3NDC A;  2EK2 A;  2EJK A;  2PB4 A;  2ED3 A;  2YBQ A;  3UV6 A;  2NPN A;  4H4C A;  2DXV A;  4EB3 A;  1PJT A;  2P2X A;  2YBO A;  3ND1 A;  1S4D A;  2EKA A;  1WNG A;  2DV4 A;  3SZL A;  2DSI A;  2E08 A;  2DXW A;  3ZGL A;  2PCK A;  2E8R A;  3F7T A;  3T0F A;  2ENI A;  3NEI A;  3HH1 A;  2PCA A;  2E16 A;  1WYZ A;  4E16 A;  2P5C A;  3UTD A;  1V9A A;  2EMR A;  2HUX A;  3FFY A;  2E4N A;  2PCH A;  2EJJ A;  4H4E A;  3I4T A;  3KEF A;  2E8H A;  2EHC A;  3UV7 A;  1CBF A;  4MUX A;  2E7R A;  2ZVC A;  2EK3 A;  2ZVB A;  2E0N A;  3KE8 A;  2EK7 A;  1VE2 A;  1PJS A;  2DXX A;  3KWP A;  2EK4 A;  3NUT A;  2DV7 A;  1WDE A; 
#chains in the Genus database with same CATH homology
 2E17 A;  2EL2 A;  2HUQ A;  2DSG A;  3DNF A;  2P6L A;  2EH5 A;  2P6K A;  2KYY A;  3KEL A;  2HUV A;  2EN5 A;  3T0G A;  3UV3 A;  2PCG A;  2E4R A;  3ZGN A;  2E0K A;  2ELE A;  2OWK A;  4MV5 A;  2EEQ A;  2BB3 A;  4N7B A;  3TIX B;  2ELD A;  2EL3 A;  2P6I A;  2QBU A;  2ED5 A;  2OWF A;  2DSH A;  2EL0 A;  2OWU A;  2HUT A;  2P9D A;  3SZU A;  2OWV A;  2EGB A;  2HR8 A;  5HW4 A;  2E8S A;  2DEK A;  2DV3 A;  4H4D A;  3LMM A;  2E8Q A;  2P6D A;  2CBF A;  4MV0 A;  2PB6 A;  2EH2 A;  2E15 A;  2P5F A;  3SZO A;  4MUY A;  3KE9 A;  2EGL A;  2EHL A;  3KEM A;  3UTC A;  2OWG A;  3FQ6 A;  3UWM A;  2PB5 A;  2EGS A;  2Z6R A;  3URK A;  1PJQ A;  1VA0 A;  2PCM A;  1VHV A;  2PCI A;  2EL1 A;  2EJZ A;  2E07 A;  2DV5 A;  1VCE A;  2EH4 A;  2EMU A;  3NDC A;  2EK2 A;  2EJK A;  2PB4 A;  2ED3 A;  2YBQ A;  3UV6 A;  2NPN A;  4H4C A;  2DXV A;  4EB3 A;  1PJT A;  2P2X A;  2YBO A;  3ND1 A;  1S4D A;  2EKA A;  1WNG A;  2DV4 A;  3SZL A;  2DSI A;  2E08 A;  2DXW A;  3ZGL A;  2PCK A;  2E8R A;  3F7T A;  3T0F A;  2ENI A;  3NEI A;  3HH1 A;  2PCA A;  2E16 A;  1WYZ A;  4E16 A;  2P5C A;  3UTD A;  1V9A A;  2EMR A;  2HUX A;  3FFY A;  2E4N A;  2PCH A;  2EJJ A;  4H4E A;  3I4T A;  3KEF A;  2E8H A;  2EHC A;  3UV7 A;  1CBF A;  4MUX A;  2E7R A;  2ZVC A;  2EK3 A;  2ZVB A;  2E0N A;  3KE8 A;  2EK7 A;  1VE2 A;  1PJS A;  2DXX A;  3KWP A;  2EK4 A;  3NUT A;  2DV7 A;  1WDE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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