2E8HA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLMFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8hA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8hA01
2Z6RA 2E08A 2E8RA 2EH2A 3NUTA 2EK2A 2EK7A 2PB5A 2HR8A 2EL0A 2PCKA 4E16A 2DEKA 2DSIA 2P2XA 2EL2A 2P5FA 2PB6A 2P6DA 2DV3A 3KWPA 2PCGA 2EH4A 2P6LA 2DV5A 2P5CA 2EGLA 2DV7A 2PB4A 2EN5A 2EK3A 2OWVA 1VA0A 2ZVCA 1PJQA 3I4TA 2ED3A 2EHCA 2E7RA 2ZVBA 2OWGA 1PJTA 2E4NA 2E8QA 2HUQA 1VCEA 1WYZA 1CBFA 2E17A 1VHVA 2PCIA 2E16A 2YBQA 2DSGA 1WDEA 2E0KA 3ND1A 1VE2A 2ENIA 2EJKA 2P6KA 2HUVA 2PCHA 2DSHA 2OWFA 2DXXA 1WNGA 2CBFA 3FQ6A 1S4DA 2EJJA 2DXVA 1V9AA 2E8SA 2E07A 2HUXA 2EJZA 2HUTA 2EL3A 2DXWA 2OWUA 2EH5A 2EKAA 2PCMA 2EHLA 2YBOA 2EEQA 2EGSA 2EK4A 3NDCA 2E15A 2EMRA 2P9DA 2NPNA 2E4RA 2QBUA 2ELDA 2PCAA 5HW4A 2BB3A 2EGBA 2E0NA 2ED5A 2EL1A 2EMUA 2OWKA 2ELEA 3NEIA 3HH1A 1PJSA 2P6IA 2E8HA 3FFYA 2DV4A
chains in the Genus database with same CATH superfamily
2Z6RA 2E08A 2E8RA 3URKA 2EH2A 3NUTA 3LMMA 2EK2A 2EK7A 2PB5A 4H4CA 3T0FA 2HR8A 3KE8A 2EL0A 2PCKA 4E16A 2DEKA 2DSIA 4MV5A 2P2XA 3ZGLA 2EL2A 2P5FA 2PB6A 2P6DA 2DV3A 3KWPA 2PCGA 2EH4A 2P6LA 2DV5A 2P5CA 3KELA 2EGLA 2DV7A 2PB4A 2EN5A 2EK3A 2OWVA 1VA0A 2ZVCA 4H4DA 1PJQA 2KYYA 3I4TA 2ED3A 2EHCA 2E7RA 2ZVBA 2OWGA 1PJTA 2E4NA 2E8QA 2HUQA 1VCEA 1WYZA 1CBFA 2E17A 1VHVA 2PCIA 2E16A 2YBQA 2DSGA 1WDEA 3UTDA 2E0KA 3ND1A 1VE2A 2ENIA 2EJKA 2P6KA 2HUVA 2PCHA 2DSHA 2OWFA 2DXXA 1WNGA 2CBFA 3UV6A 3FQ6A 3TIXB 1S4DA 3SZOA 2EJJA 3UV7A 2DXVA 1V9AA 2E8SA 2E07A 3UTCA 2HUXA 2EJZA 4MUXA 2HUTA 3KE9A 3DNFA 2EL3A 2DXWA 2OWUA 2EH5A 3UWMA 2EKAA 2PCMA 2EHLA 2YBOA 3SZLA 4N7BA 2EEQA 2EGSA 2EK4A 3KEFA 3NDCA 3ZGNA 2E15A 2EMRA 4MUYA 3SZUA 2P9DA 2NPNA 3F7TA 2E4RA 2QBUA 2ELDA 2PCAA 3T0GA 5HW4A 2BB3A 2EGBA 2E0NA 2ED5A 2EL1A 2EMUA 3KEMA 4EB3A 2OWKA 3UV3A 2ELEA 4H4EA 3NEIA 3HH1A 1PJSA 2P6IA 4MV0A 2E8HA 3FFYA 2DV4A
chains in the Genus database with same CATH topology
2Z6RA 2E08A 2E8RA 3URKA 2EH2A 3NUTA 3LMMA 2EK2A 2EK7A 2PB5A 4H4CA 3T0FA 2HR8A 3KE8A 2EL0A 2PCKA 4E16A 2DEKA 2DSIA 4MV5A 2P2XA 3ZGLA 2EL2A 2P5FA 2PB6A 2P6DA 2DV3A 3KWPA 2PCGA 2EH4A 2P6LA 2DV5A 2P5CA 3KELA 2EGLA 2DV7A 2PB4A 2EN5A 2EK3A 2OWVA 1VA0A 2ZVCA 4H4DA 1PJQA 2KYYA 3I4TA 2ED3A 2EHCA 2E7RA 2ZVBA 2OWGA 1PJTA 2E4NA 2E8QA 2HUQA 1VCEA 1WYZA 1CBFA 2E17A 1VHVA 2PCIA 2E16A 2YBQA 2DSGA 1WDEA 3UTDA 2E0KA 3ND1A 1VE2A 2ENIA 2EJKA 2P6KA 2HUVA 2PCHA 2DSHA 2OWFA 2DXXA 1WNGA 2CBFA 3UV6A 3FQ6A 3TIXB 1S4DA 3SZOA 2EJJA 3UV7A 2DXVA 1V9AA 2E8SA 2E07A 3UTCA 2HUXA 2EJZA 4MUXA 2HUTA 3KE9A 3DNFA 2EL3A 2DXWA 2OWUA 2EH5A 3UWMA 2EKAA 2PCMA 2EHLA 2YBOA 3SZLA 4N7BA 2EEQA 2EGSA 2EK4A 3KEFA 3NDCA 3ZGNA 2E15A 2EMRA 4MUYA 3SZUA 2P9DA 2NPNA 3F7TA 2E4RA 2QBUA 2ELDA 2PCAA 3T0GA 5HW4A 2BB3A 2EGBA 2E0NA 2ED5A 2EL1A 2EMUA 3KEMA 4EB3A 2OWKA 3UV3A 2ELEA 4H4EA 3NEIA 3HH1A 1PJSA 2P6IA 4MV0A 2E8HA 3FFYA 2DV4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z6R A;  2E08 A;  2E8R A;  2EH2 A;  3NUT A;  2EK2 A;  2EK7 A;  2PB5 A;  2HR8 A;  2EL0 A;  2PCK A;  4E16 A;  2DEK A;  2DSI A;  2P2X A;  2EL2 A;  2P5F A;  2PB6 A;  2P6D A;  2DV3 A;  3KWP A;  2PCG A;  2EH4 A;  2P6L A;  2DV5 A;  2P5C A;  2EGL A;  2DV7 A;  2PB4 A;  2EN5 A;  2EK3 A;  2OWV A;  1VA0 A;  2ZVC A;  1PJQ A;  3I4T A;  2ED3 A;  2EHC A;  2E7R A;  2ZVB A;  2OWG A;  1PJT A;  2E4N A;  2E8Q A;  2HUQ A;  1VCE A;  1WYZ A;  1CBF A;  2E17 A;  1VHV A;  2PCI A;  2E16 A;  2YBQ A;  2DSG A;  1WDE A;  2E0K A;  3ND1 A;  1VE2 A;  2ENI A;  2EJK A;  2P6K A;  2HUV A;  2PCH A;  2DSH A;  2OWF A;  2DXX A;  1WNG A;  2CBF A;  3FQ6 A;  1S4D A;  2EJJ A;  2DXV A;  1V9A A;  2E8S A;  2E07 A;  2HUX A;  2EJZ A;  2HUT A;  2EL3 A;  2DXW A;  2OWU A;  2EH5 A;  2EKA A;  2PCM A;  2EHL A;  2YBO A;  2EEQ A;  2EGS A;  2EK4 A;  3NDC A;  2E15 A;  2EMR A;  2P9D A;  2NPN A;  2E4R A;  2QBU A;  2ELD A;  2PCA A;  5HW4 A;  2BB3 A;  2EGB A;  2E0N A;  2ED5 A;  2EL1 A;  2EMU A;  2OWK A;  2ELE A;  3NEI A;  3HH1 A;  1PJS A;  2P6I A;  2E8H A;  3FFY A;  2DV4 A; 
#chains in the Genus database with same CATH topology
 2Z6R A;  2E08 A;  2E8R A;  3URK A;  2EH2 A;  3NUT A;  3LMM A;  2EK2 A;  2EK7 A;  2PB5 A;  4H4C A;  3T0F A;  2HR8 A;  3KE8 A;  2EL0 A;  2PCK A;  4E16 A;  2DEK A;  2DSI A;  4MV5 A;  2P2X A;  3ZGL A;  2EL2 A;  2P5F A;  2PB6 A;  2P6D A;  2DV3 A;  3KWP A;  2PCG A;  2EH4 A;  2P6L A;  2DV5 A;  2P5C A;  3KEL A;  2EGL A;  2DV7 A;  2PB4 A;  2EN5 A;  2EK3 A;  2OWV A;  1VA0 A;  2ZVC A;  4H4D A;  1PJQ A;  2KYY A;  3I4T A;  2ED3 A;  2EHC A;  2E7R A;  2ZVB A;  2OWG A;  1PJT A;  2E4N A;  2E8Q A;  2HUQ A;  1VCE A;  1WYZ A;  1CBF A;  2E17 A;  1VHV A;  2PCI A;  2E16 A;  2YBQ A;  2DSG A;  1WDE A;  3UTD A;  2E0K A;  3ND1 A;  1VE2 A;  2ENI A;  2EJK A;  2P6K A;  2HUV A;  2PCH A;  2DSH A;  2OWF A;  2DXX A;  1WNG A;  2CBF A;  3UV6 A;  3FQ6 A;  3TIX B;  1S4D A;  3SZO A;  2EJJ A;  3UV7 A;  2DXV A;  1V9A A;  2E8S A;  2E07 A;  3UTC A;  2HUX A;  2EJZ A;  4MUX A;  2HUT A;  3KE9 A;  3DNF A;  2EL3 A;  2DXW A;  2OWU A;  2EH5 A;  3UWM A;  2EKA A;  2PCM A;  2EHL A;  2YBO A;  3SZL A;  4N7B A;  2EEQ A;  2EGS A;  2EK4 A;  3KEF A;  3NDC A;  3ZGN A;  2E15 A;  2EMR A;  4MUY A;  3SZU A;  2P9D A;  2NPN A;  3F7T A;  2E4R A;  2QBU A;  2ELD A;  2PCA A;  3T0G A;  5HW4 A;  2BB3 A;  2EGB A;  2E0N A;  2ED5 A;  2EL1 A;  2EMU A;  3KEM A;  4EB3 A;  2OWK A;  3UV3 A;  2ELE A;  4H4E A;  3NEI A;  3HH1 A;  1PJS A;  2P6I A;  4MV0 A;  2E8H A;  3FFY A;  2DV4 A; 
#chains in the Genus database with same CATH homology
 2Z6R A;  2E08 A;  2E8R A;  3URK A;  2EH2 A;  3NUT A;  3LMM A;  2EK2 A;  2EK7 A;  2PB5 A;  4H4C A;  3T0F A;  2HR8 A;  3KE8 A;  2EL0 A;  2PCK A;  4E16 A;  2DEK A;  2DSI A;  4MV5 A;  2P2X A;  3ZGL A;  2EL2 A;  2P5F A;  2PB6 A;  2P6D A;  2DV3 A;  3KWP A;  2PCG A;  2EH4 A;  2P6L A;  2DV5 A;  2P5C A;  3KEL A;  2EGL A;  2DV7 A;  2PB4 A;  2EN5 A;  2EK3 A;  2OWV A;  1VA0 A;  2ZVC A;  4H4D A;  1PJQ A;  2KYY A;  3I4T A;  2ED3 A;  2EHC A;  2E7R A;  2ZVB A;  2OWG A;  1PJT A;  2E4N A;  2E8Q A;  2HUQ A;  1VCE A;  1WYZ A;  1CBF A;  2E17 A;  1VHV A;  2PCI A;  2E16 A;  2YBQ A;  2DSG A;  1WDE A;  3UTD A;  2E0K A;  3ND1 A;  1VE2 A;  2ENI A;  2EJK A;  2P6K A;  2HUV A;  2PCH A;  2DSH A;  2OWF A;  2DXX A;  1WNG A;  2CBF A;  3UV6 A;  3FQ6 A;  3TIX B;  1S4D A;  3SZO A;  2EJJ A;  3UV7 A;  2DXV A;  1V9A A;  2E8S A;  2E07 A;  3UTC A;  2HUX A;  2EJZ A;  4MUX A;  2HUT A;  3KE9 A;  3DNF A;  2EL3 A;  2DXW A;  2OWU A;  2EH5 A;  3UWM A;  2EKA A;  2PCM A;  2EHL A;  2YBO A;  3SZL A;  4N7B A;  2EEQ A;  2EGS A;  2EK4 A;  3KEF A;  3NDC A;  3ZGN A;  2E15 A;  2EMR A;  4MUY A;  3SZU A;  2P9D A;  2NPN A;  3F7T A;  2E4R A;  2QBU A;  2ELD A;  2PCA A;  3T0G A;  5HW4 A;  2BB3 A;  2EGB A;  2E0N A;  2ED5 A;  2EL1 A;  2EMU A;  3KEM A;  4EB3 A;  2OWK A;  3UV3 A;  2ELE A;  4H4E A;  3NEI A;  3HH1 A;  1PJS A;  2P6I A;  4MV0 A;  2E8H A;  3FFY A;  2DV4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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