2E8HA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLMFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8hA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8hA01
2DEKA 2EKAA 2DV3A 1VE2A 2HR8A 2ELDA 2EK3A 2EGLA 1CBFA 3FQ6A 2EJKA 5HW4A 2P6KA 2E8HA 1WYZA 2PB6A 2E0KA 2EK4A 2HUVA 2E8SA 2ED5A 2PCGA 2EGBA 2DV4A 4E16A 3HH1A 2PCKA 2EGSA 2E7RA 1PJTA 2E4NA 2ELEA 2CBFA 2DSIA 2NPNA 2E16A 2HUQA 3NEIA 2Z6RA 2YBOA 1VHVA 2QBUA 1V9AA 2DXWA 2E07A 2EJJA 2ENIA 2E8QA 1VA0A 2EH2A 2YBQA 2DV5A 2P6DA 2E08A 2HUTA 2E15A 3ND1A 2OWGA 2P6IA 2EH5A 1PJSA 2EL2A 2DSHA 2E8RA 2E0NA 2EN5A 2P2XA 2EEQA 2EHCA 2EHLA 2DXVA 2OWVA 2EL1A 2E4RA 2EL0A 2DSGA 2P9DA 2EH4A 1WNGA 2EL3A 2DV7A 2P5FA 2EK2A 2ED3A 2DXXA 2PCHA 1PJQA 2EMRA 2OWFA 2ZVBA 2OWKA 2EMUA 1VCEA 3NUTA 2E17A 2PCIA 2ZVCA 2PB5A 2EJZA 2PB4A 2P6LA 1WDEA 1S4DA 2PCMA 3KWPA 2P5CA 3FFYA 2OWUA 3NDCA 2HUXA 2EK7A 2PCAA 3I4TA 2BB3A
chains in the Genus database with same CATH superfamily
3T0FA 2DEKA 2EKAA 2DV3A 1VE2A 2HR8A 2ELDA 2EK3A 2EGLA 1CBFA 3FQ6A 3ZGLA 2EJKA 5HW4A 2P6KA 2E8HA 1WYZA 2PB6A 2E0KA 2EK4A 2HUVA 2E8SA 2ED5A 3SZUA 4EB3A 2PCGA 2EGBA 2DV4A 4E16A 4MUXA 3HH1A 2PCKA 3TIXB 2EGSA 2E7RA 1PJTA 3KEFA 2E4NA 4H4EA 2ELEA 2CBFA 2DSIA 2NPNA 2E16A 3UV6A 3UV3A 2HUQA 3NEIA 4N7BA 3KEMA 2Z6RA 2YBOA 3KE9A 4H4CA 1VHVA 3DNFA 2QBUA 1V9AA 2DXWA 2E07A 2EJJA 2ENIA 2E8QA 1VA0A 2EH2A 2YBQA 3KE8A 2DV5A 2P6DA 3F7TA 2E08A 2HUTA 2E15A 3ND1A 2OWGA 2P6IA 2EH5A 1PJSA 3KELA 2EL2A 2DSHA 2E8RA 2E0NA 2EN5A 2P2XA 2EEQA 4H4DA 2EHCA 2EHLA 3UWMA 2DXVA 2OWVA 2EL1A 2E4RA 3UV7A 2EL0A 2DSGA 2P9DA 2EH4A 4MUYA 1WNGA 2EL3A 2DV7A 2P5FA 2EK2A 2ED3A 2DXXA 2PCHA 4MV5A 3URKA 1PJQA 4MV0A 2EMRA 2KYYA 2OWFA 2ZVBA 2OWKA 3UTCA 2EMUA 1VCEA 3NUTA 3ZGNA 2E17A 2PCIA 2ZVCA 2PB5A 3LMMA 3UTDA 2EJZA 2PB4A 2P6LA 3SZLA 1WDEA 1S4DA 2PCMA 3KWPA 2P5CA 3FFYA 2OWUA 3NDCA 2HUXA 2EK7A 3SZOA 2PCAA 3I4TA 2BB3A 3T0GA
chains in the Genus database with same CATH topology
3T0FA 2DEKA 2EKAA 2DV3A 1VE2A 2HR8A 2ELDA 2EK3A 2EGLA 1CBFA 3FQ6A 3ZGLA 2EJKA 5HW4A 2P6KA 2E8HA 1WYZA 2PB6A 2E0KA 2EK4A 2HUVA 2E8SA 2ED5A 3SZUA 4EB3A 2PCGA 2EGBA 2DV4A 4E16A 4MUXA 3HH1A 2PCKA 3TIXB 2EGSA 2E7RA 1PJTA 3KEFA 2E4NA 4H4EA 2ELEA 2CBFA 2DSIA 2NPNA 2E16A 3UV6A 3UV3A 2HUQA 3NEIA 4N7BA 3KEMA 2Z6RA 2YBOA 3KE9A 4H4CA 1VHVA 3DNFA 2QBUA 1V9AA 2DXWA 2E07A 2EJJA 2ENIA 2E8QA 1VA0A 2EH2A 2YBQA 3KE8A 2DV5A 2P6DA 3F7TA 2E08A 2HUTA 2E15A 3ND1A 2OWGA 2P6IA 2EH5A 1PJSA 3KELA 2EL2A 2DSHA 2E8RA 2E0NA 2EN5A 2P2XA 2EEQA 4H4DA 2EHCA 2EHLA 3UWMA 2DXVA 2OWVA 2EL1A 2E4RA 3UV7A 2EL0A 2DSGA 2P9DA 2EH4A 4MUYA 1WNGA 2EL3A 2DV7A 2P5FA 2EK2A 2ED3A 2DXXA 2PCHA 4MV5A 3URKA 1PJQA 4MV0A 2EMRA 2KYYA 2OWFA 2ZVBA 2OWKA 3UTCA 2EMUA 1VCEA 3NUTA 3ZGNA 2E17A 2PCIA 2ZVCA 2PB5A 3LMMA 3UTDA 2EJZA 2PB4A 2P6LA 3SZLA 1WDEA 1S4DA 2PCMA 3KWPA 2P5CA 3FFYA 2OWUA 3NDCA 2HUXA 2EK7A 3SZOA 2PCAA 3I4TA 2BB3A 3T0GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DEK A;  2EKA A;  2DV3 A;  1VE2 A;  2HR8 A;  2ELD A;  2EK3 A;  2EGL A;  1CBF A;  3FQ6 A;  2EJK A;  5HW4 A;  2P6K A;  2E8H A;  1WYZ A;  2PB6 A;  2E0K A;  2EK4 A;  2HUV A;  2E8S A;  2ED5 A;  2PCG A;  2EGB A;  2DV4 A;  4E16 A;  3HH1 A;  2PCK A;  2EGS A;  2E7R A;  1PJT A;  2E4N A;  2ELE A;  2CBF A;  2DSI A;  2NPN A;  2E16 A;  2HUQ A;  3NEI A;  2Z6R A;  2YBO A;  1VHV A;  2QBU A;  1V9A A;  2DXW A;  2E07 A;  2EJJ A;  2ENI A;  2E8Q A;  1VA0 A;  2EH2 A;  2YBQ A;  2DV5 A;  2P6D A;  2E08 A;  2HUT A;  2E15 A;  3ND1 A;  2OWG A;  2P6I A;  2EH5 A;  1PJS A;  2EL2 A;  2DSH A;  2E8R A;  2E0N A;  2EN5 A;  2P2X A;  2EEQ A;  2EHC A;  2EHL A;  2DXV A;  2OWV A;  2EL1 A;  2E4R A;  2EL0 A;  2DSG A;  2P9D A;  2EH4 A;  1WNG A;  2EL3 A;  2DV7 A;  2P5F A;  2EK2 A;  2ED3 A;  2DXX A;  2PCH A;  1PJQ A;  2EMR A;  2OWF A;  2ZVB A;  2OWK A;  2EMU A;  1VCE A;  3NUT A;  2E17 A;  2PCI A;  2ZVC A;  2PB5 A;  2EJZ A;  2PB4 A;  2P6L A;  1WDE A;  1S4D A;  2PCM A;  3KWP A;  2P5C A;  3FFY A;  2OWU A;  3NDC A;  2HUX A;  2EK7 A;  2PCA A;  3I4T A;  2BB3 A; 
#chains in the Genus database with same CATH topology
 3T0F A;  2DEK A;  2EKA A;  2DV3 A;  1VE2 A;  2HR8 A;  2ELD A;  2EK3 A;  2EGL A;  1CBF A;  3FQ6 A;  3ZGL A;  2EJK A;  5HW4 A;  2P6K A;  2E8H A;  1WYZ A;  2PB6 A;  2E0K A;  2EK4 A;  2HUV A;  2E8S A;  2ED5 A;  3SZU A;  4EB3 A;  2PCG A;  2EGB A;  2DV4 A;  4E16 A;  4MUX A;  3HH1 A;  2PCK A;  3TIX B;  2EGS A;  2E7R A;  1PJT A;  3KEF A;  2E4N A;  4H4E A;  2ELE A;  2CBF A;  2DSI A;  2NPN A;  2E16 A;  3UV6 A;  3UV3 A;  2HUQ A;  3NEI A;  4N7B A;  3KEM A;  2Z6R A;  2YBO A;  3KE9 A;  4H4C A;  1VHV A;  3DNF A;  2QBU A;  1V9A A;  2DXW A;  2E07 A;  2EJJ A;  2ENI A;  2E8Q A;  1VA0 A;  2EH2 A;  2YBQ A;  3KE8 A;  2DV5 A;  2P6D A;  3F7T A;  2E08 A;  2HUT A;  2E15 A;  3ND1 A;  2OWG A;  2P6I A;  2EH5 A;  1PJS A;  3KEL A;  2EL2 A;  2DSH A;  2E8R A;  2E0N A;  2EN5 A;  2P2X A;  2EEQ A;  4H4D A;  2EHC A;  2EHL A;  3UWM A;  2DXV A;  2OWV A;  2EL1 A;  2E4R A;  3UV7 A;  2EL0 A;  2DSG A;  2P9D A;  2EH4 A;  4MUY A;  1WNG A;  2EL3 A;  2DV7 A;  2P5F A;  2EK2 A;  2ED3 A;  2DXX A;  2PCH A;  4MV5 A;  3URK A;  1PJQ A;  4MV0 A;  2EMR A;  2KYY A;  2OWF A;  2ZVB A;  2OWK A;  3UTC A;  2EMU A;  1VCE A;  3NUT A;  3ZGN A;  2E17 A;  2PCI A;  2ZVC A;  2PB5 A;  3LMM A;  3UTD A;  2EJZ A;  2PB4 A;  2P6L A;  3SZL A;  1WDE A;  1S4D A;  2PCM A;  3KWP A;  2P5C A;  3FFY A;  2OWU A;  3NDC A;  2HUX A;  2EK7 A;  3SZO A;  2PCA A;  3I4T A;  2BB3 A;  3T0G A; 
#chains in the Genus database with same CATH homology
 3T0F A;  2DEK A;  2EKA A;  2DV3 A;  1VE2 A;  2HR8 A;  2ELD A;  2EK3 A;  2EGL A;  1CBF A;  3FQ6 A;  3ZGL A;  2EJK A;  5HW4 A;  2P6K A;  2E8H A;  1WYZ A;  2PB6 A;  2E0K A;  2EK4 A;  2HUV A;  2E8S A;  2ED5 A;  3SZU A;  4EB3 A;  2PCG A;  2EGB A;  2DV4 A;  4E16 A;  4MUX A;  3HH1 A;  2PCK A;  3TIX B;  2EGS A;  2E7R A;  1PJT A;  3KEF A;  2E4N A;  4H4E A;  2ELE A;  2CBF A;  2DSI A;  2NPN A;  2E16 A;  3UV6 A;  3UV3 A;  2HUQ A;  3NEI A;  4N7B A;  3KEM A;  2Z6R A;  2YBO A;  3KE9 A;  4H4C A;  1VHV A;  3DNF A;  2QBU A;  1V9A A;  2DXW A;  2E07 A;  2EJJ A;  2ENI A;  2E8Q A;  1VA0 A;  2EH2 A;  2YBQ A;  3KE8 A;  2DV5 A;  2P6D A;  3F7T A;  2E08 A;  2HUT A;  2E15 A;  3ND1 A;  2OWG A;  2P6I A;  2EH5 A;  1PJS A;  3KEL A;  2EL2 A;  2DSH A;  2E8R A;  2E0N A;  2EN5 A;  2P2X A;  2EEQ A;  4H4D A;  2EHC A;  2EHL A;  3UWM A;  2DXV A;  2OWV A;  2EL1 A;  2E4R A;  3UV7 A;  2EL0 A;  2DSG A;  2P9D A;  2EH4 A;  4MUY A;  1WNG A;  2EL3 A;  2DV7 A;  2P5F A;  2EK2 A;  2ED3 A;  2DXX A;  2PCH A;  4MV5 A;  3URK A;  1PJQ A;  4MV0 A;  2EMR A;  2KYY A;  2OWF A;  2ZVB A;  2OWK A;  3UTC A;  2EMU A;  1VCE A;  3NUT A;  3ZGN A;  2E17 A;  2PCI A;  2ZVC A;  2PB5 A;  3LMM A;  3UTD A;  2EJZ A;  2PB4 A;  2P6L A;  3SZL A;  1WDE A;  1S4D A;  2PCM A;  3KWP A;  2P5C A;  3FFY A;  2OWU A;  3NDC A;  2HUX A;  2EK7 A;  3SZO A;  2PCA A;  3I4T A;  2BB3 A;  3T0G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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