2E8QA

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (k19m)
Total Genus 79
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVMGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (K19M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 79
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8qA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8qA01
1WYZA 2EN5A 2P5FA 2P6LA 2DSHA 2E8HA 2OWKA 2E4NA 2EK3A 3HH1A 2EL3A 2ZVBA 2OWFA 2E17A 2Z6RA 2DXVA 2P2XA 2PCHA 1WNGA 2ENIA 2DXWA 2DSIA 2EGBA 2E15A 2P5CA 2E4RA 2DV7A 2ELEA 2DEKA 3I4TA 3KWPA 1PJSA 1VCEA 5HW4A 2ED5A 2EJJA 2HUVA 3FFYA 1PJTA 2PCGA 2PB4A 2EH5A 2DV4A 2ZVCA 2E16A 3ND1A 1S4DA 3NEIA 2PCKA 2P9DA 1V9AA 2OWUA 2EH4A 3NDCA 2PB6A 2E07A 2EEQA 2EMUA 2BB3A 2EKAA 2E0NA 2EHCA 2EK7A 2EGLA 2PCIA 2HUXA 2PCAA 2EJZA 2NPNA 1VHVA 2OWGA 2QBUA 4E16A 2EL0A 1VE2A 2EL1A 1WDEA 2YBOA 2E8RA 2P6KA 2EJKA 2EH2A 2EL2A 1PJQA 2HUTA 2DXXA 3FQ6A 2E0KA 2OWVA 2DV5A 2P6DA 2E7RA 2YBQA 2ED3A 2E08A 1VA0A 2PB5A 2HUQA 2ELDA 1CBFA 2EHLA 3NUTA 2HR8A 2E8QA 2EK2A 2EMRA 2EK4A 2P6IA 2E8SA 2EGSA 2CBFA 2DSGA 2PCMA 2DV3A
chains in the Genus database with same CATH superfamily
4MUYA 1WYZA 2EN5A 3SZUA 3KELA 2P5FA 3F7TA 2P6LA 3SZOA 3UWMA 2DSHA 4EB3A 2E8HA 2OWKA 3T0FA 3UTCA 2E4NA 2EK3A 3HH1A 2EL3A 2ZVBA 3KE8A 2KYYA 2OWFA 2E17A 2Z6RA 2DXVA 2P2XA 2PCHA 3LMMA 1WNGA 2ENIA 2DXWA 2DSIA 2EGBA 3UV3A 2E15A 2P5CA 3UTDA 2E4RA 2DV7A 2ELEA 2DEKA 3I4TA 3KWPA 3DNFA 3UV7A 1PJSA 1VCEA 5HW4A 2ED5A 2EJJA 2HUVA 3FFYA 1PJTA 3URKA 2PCGA 3KEFA 2PB4A 2EH5A 2DV4A 4MV0A 4H4DA 2ZVCA 2E16A 3ND1A 1S4DA 3NEIA 2PCKA 2P9DA 3T0GA 1V9AA 2OWUA 2EH4A 3NDCA 2PB6A 4H4EA 2E07A 4MUXA 4H4CA 2EEQA 2EMUA 2BB3A 2EKAA 2E0NA 2EHCA 2EK7A 2EGLA 2PCIA 2HUXA 2PCAA 2EJZA 2NPNA 1VHVA 2OWGA 2QBUA 4E16A 2EL0A 1VE2A 2EL1A 3UV6A 1WDEA 2YBOA 2E8RA 2P6KA 2EJKA 3ZGLA 2EH2A 2EL2A 1PJQA 2HUTA 2DXXA 3FQ6A 2E0KA 2OWVA 2DV5A 2P6DA 2E7RA 3KE9A 2YBQA 2ED3A 2E08A 1VA0A 2PB5A 2HUQA 3ZGNA 2ELDA 1CBFA 2EHLA 3NUTA 2HR8A 2E8QA 2EK2A 2EMRA 2EK4A 2P6IA 2E8SA 2EGSA 2CBFA 2DSGA 4N7BA 2PCMA 3KEMA 3SZLA 4MV5A 2DV3A 3TIXB
chains in the Genus database with same CATH topology
4MUYA 1WYZA 2EN5A 3SZUA 3KELA 2P5FA 3F7TA 2P6LA 3SZOA 3UWMA 2DSHA 4EB3A 2E8HA 2OWKA 3T0FA 3UTCA 2E4NA 2EK3A 3HH1A 2EL3A 2ZVBA 3KE8A 2KYYA 2OWFA 2E17A 2Z6RA 2DXVA 2P2XA 2PCHA 3LMMA 1WNGA 2ENIA 2DXWA 2DSIA 2EGBA 3UV3A 2E15A 2P5CA 3UTDA 2E4RA 2DV7A 2ELEA 2DEKA 3I4TA 3KWPA 3DNFA 3UV7A 1PJSA 1VCEA 5HW4A 2ED5A 2EJJA 2HUVA 3FFYA 1PJTA 3URKA 2PCGA 3KEFA 2PB4A 2EH5A 2DV4A 4MV0A 4H4DA 2ZVCA 2E16A 3ND1A 1S4DA 3NEIA 2PCKA 2P9DA 3T0GA 1V9AA 2OWUA 2EH4A 3NDCA 2PB6A 4H4EA 2E07A 4MUXA 4H4CA 2EEQA 2EMUA 2BB3A 2EKAA 2E0NA 2EHCA 2EK7A 2EGLA 2PCIA 2HUXA 2PCAA 2EJZA 2NPNA 1VHVA 2OWGA 2QBUA 4E16A 2EL0A 1VE2A 2EL1A 3UV6A 1WDEA 2YBOA 2E8RA 2P6KA 2EJKA 3ZGLA 2EH2A 2EL2A 1PJQA 2HUTA 2DXXA 3FQ6A 2E0KA 2OWVA 2DV5A 2P6DA 2E7RA 3KE9A 2YBQA 2ED3A 2E08A 1VA0A 2PB5A 2HUQA 3ZGNA 2ELDA 1CBFA 2EHLA 3NUTA 2HR8A 2E8QA 2EK2A 2EMRA 2EK4A 2P6IA 2E8SA 2EGSA 2CBFA 2DSGA 4N7BA 2PCMA 3KEMA 3SZLA 4MV5A 2DV3A 3TIXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WYZ A;  2EN5 A;  2P5F A;  2P6L A;  2DSH A;  2E8H A;  2OWK A;  2E4N A;  2EK3 A;  3HH1 A;  2EL3 A;  2ZVB A;  2OWF A;  2E17 A;  2Z6R A;  2DXV A;  2P2X A;  2PCH A;  1WNG A;  2ENI A;  2DXW A;  2DSI A;  2EGB A;  2E15 A;  2P5C A;  2E4R A;  2DV7 A;  2ELE A;  2DEK A;  3I4T A;  3KWP A;  1PJS A;  1VCE A;  5HW4 A;  2ED5 A;  2EJJ A;  2HUV A;  3FFY A;  1PJT A;  2PCG A;  2PB4 A;  2EH5 A;  2DV4 A;  2ZVC A;  2E16 A;  3ND1 A;  1S4D A;  3NEI A;  2PCK A;  2P9D A;  1V9A A;  2OWU A;  2EH4 A;  3NDC A;  2PB6 A;  2E07 A;  2EEQ A;  2EMU A;  2BB3 A;  2EKA A;  2E0N A;  2EHC A;  2EK7 A;  2EGL A;  2PCI A;  2HUX A;  2PCA A;  2EJZ A;  2NPN A;  1VHV A;  2OWG A;  2QBU A;  4E16 A;  2EL0 A;  1VE2 A;  2EL1 A;  1WDE A;  2YBO A;  2E8R A;  2P6K A;  2EJK A;  2EH2 A;  2EL2 A;  1PJQ A;  2HUT A;  2DXX A;  3FQ6 A;  2E0K A;  2OWV A;  2DV5 A;  2P6D A;  2E7R A;  2YBQ A;  2ED3 A;  2E08 A;  1VA0 A;  2PB5 A;  2HUQ A;  2ELD A;  1CBF A;  2EHL A;  3NUT A;  2HR8 A;  2E8Q A;  2EK2 A;  2EMR A;  2EK4 A;  2P6I A;  2E8S A;  2EGS A;  2CBF A;  2DSG A;  2PCM A;  2DV3 A; 
#chains in the Genus database with same CATH topology
 4MUY A;  1WYZ A;  2EN5 A;  3SZU A;  3KEL A;  2P5F A;  3F7T A;  2P6L A;  3SZO A;  3UWM A;  2DSH A;  4EB3 A;  2E8H A;  2OWK A;  3T0F A;  3UTC A;  2E4N A;  2EK3 A;  3HH1 A;  2EL3 A;  2ZVB A;  3KE8 A;  2KYY A;  2OWF A;  2E17 A;  2Z6R A;  2DXV A;  2P2X A;  2PCH A;  3LMM A;  1WNG A;  2ENI A;  2DXW A;  2DSI A;  2EGB A;  3UV3 A;  2E15 A;  2P5C A;  3UTD A;  2E4R A;  2DV7 A;  2ELE A;  2DEK A;  3I4T A;  3KWP A;  3DNF A;  3UV7 A;  1PJS A;  1VCE A;  5HW4 A;  2ED5 A;  2EJJ A;  2HUV A;  3FFY A;  1PJT A;  3URK A;  2PCG A;  3KEF A;  2PB4 A;  2EH5 A;  2DV4 A;  4MV0 A;  4H4D A;  2ZVC A;  2E16 A;  3ND1 A;  1S4D A;  3NEI A;  2PCK A;  2P9D A;  3T0G A;  1V9A A;  2OWU A;  2EH4 A;  3NDC A;  2PB6 A;  4H4E A;  2E07 A;  4MUX A;  4H4C A;  2EEQ A;  2EMU A;  2BB3 A;  2EKA A;  2E0N A;  2EHC A;  2EK7 A;  2EGL A;  2PCI A;  2HUX A;  2PCA A;  2EJZ A;  2NPN A;  1VHV A;  2OWG A;  2QBU A;  4E16 A;  2EL0 A;  1VE2 A;  2EL1 A;  3UV6 A;  1WDE A;  2YBO A;  2E8R A;  2P6K A;  2EJK A;  3ZGL A;  2EH2 A;  2EL2 A;  1PJQ A;  2HUT A;  2DXX A;  3FQ6 A;  2E0K A;  2OWV A;  2DV5 A;  2P6D A;  2E7R A;  3KE9 A;  2YBQ A;  2ED3 A;  2E08 A;  1VA0 A;  2PB5 A;  2HUQ A;  3ZGN A;  2ELD A;  1CBF A;  2EHL A;  3NUT A;  2HR8 A;  2E8Q A;  2EK2 A;  2EMR A;  2EK4 A;  2P6I A;  2E8S A;  2EGS A;  2CBF A;  2DSG A;  4N7B A;  2PCM A;  3KEM A;  3SZL A;  4MV5 A;  2DV3 A;  3TIX B; 
#chains in the Genus database with same CATH homology
 4MUY A;  1WYZ A;  2EN5 A;  3SZU A;  3KEL A;  2P5F A;  3F7T A;  2P6L A;  3SZO A;  3UWM A;  2DSH A;  4EB3 A;  2E8H A;  2OWK A;  3T0F A;  3UTC A;  2E4N A;  2EK3 A;  3HH1 A;  2EL3 A;  2ZVB A;  3KE8 A;  2KYY A;  2OWF A;  2E17 A;  2Z6R A;  2DXV A;  2P2X A;  2PCH A;  3LMM A;  1WNG A;  2ENI A;  2DXW A;  2DSI A;  2EGB A;  3UV3 A;  2E15 A;  2P5C A;  3UTD A;  2E4R A;  2DV7 A;  2ELE A;  2DEK A;  3I4T A;  3KWP A;  3DNF A;  3UV7 A;  1PJS A;  1VCE A;  5HW4 A;  2ED5 A;  2EJJ A;  2HUV A;  3FFY A;  1PJT A;  3URK A;  2PCG A;  3KEF A;  2PB4 A;  2EH5 A;  2DV4 A;  4MV0 A;  4H4D A;  2ZVC A;  2E16 A;  3ND1 A;  1S4D A;  3NEI A;  2PCK A;  2P9D A;  3T0G A;  1V9A A;  2OWU A;  2EH4 A;  3NDC A;  2PB6 A;  4H4E A;  2E07 A;  4MUX A;  4H4C A;  2EEQ A;  2EMU A;  2BB3 A;  2EKA A;  2E0N A;  2EHC A;  2EK7 A;  2EGL A;  2PCI A;  2HUX A;  2PCA A;  2EJZ A;  2NPN A;  1VHV A;  2OWG A;  2QBU A;  4E16 A;  2EL0 A;  1VE2 A;  2EL1 A;  3UV6 A;  1WDE A;  2YBO A;  2E8R A;  2P6K A;  2EJK A;  3ZGL A;  2EH2 A;  2EL2 A;  1PJQ A;  2HUT A;  2DXX A;  3FQ6 A;  2E0K A;  2OWV A;  2DV5 A;  2P6D A;  2E7R A;  3KE9 A;  2YBQ A;  2ED3 A;  2E08 A;  1VA0 A;  2PB5 A;  2HUQ A;  3ZGN A;  2ELD A;  1CBF A;  2EHL A;  3NUT A;  2HR8 A;  2E8Q A;  2EK2 A;  2EMR A;  2EK4 A;  2P6I A;  2E8S A;  2EGS A;  2CBF A;  2DSG A;  4N7B A;  2PCM A;  3KEM A;  3SZL A;  4MV5 A;  2DV3 A;  3TIX B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...