2E8QA

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (k19m)
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVMGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (K19M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 79
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8qA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8qA01
2PCMA 2Z6RA 2PCIA 2DEKA 2E4NA 2ZVBA 2EGLA 2DXXA 5HW4A 2E17A 3HH1A 2P5FA 2DV3A 2EK3A 1VA0A 2HUTA 1S4DA 2P9DA 2OWUA 2EN5A 2P6KA 2DV4A 1PJSA 3ND1A 1V9AA 2EJZA 2DXVA 1VE2A 2EL1A 2EJKA 2EK2A 2E07A 4E16A 2EK4A 2E7RA 2E8HA 2EK7A 2PB4A 2DV7A 2EGSA 2EHCA 1PJQA 2PB5A 2EH2A 2E15A 2QBUA 2EH4A 2EL0A 2EHLA 2DXWA 2ED5A 3FQ6A 3FFYA 2OWFA 2PCAA 1WDEA 2P2XA 2ELEA 2E8QA 2P6IA 2ENIA 2HUVA 2NPNA 2E16A 2DSHA 2HUXA 1VCEA 2EMRA 3I4TA 2P5CA 2HR8A 1CBFA 2E0NA 2E08A 2PB6A 2OWKA 2ELDA 2E8SA 2EEQA 2PCKA 3KWPA 2EL2A 2OWVA 2EJJA 1VHVA 2P6DA 1WNGA 3NEIA 2BB3A 3NDCA 2E8RA 2EMUA 2ED3A 2EKAA 2CBFA 2OWGA 2PCHA 2YBOA 2PCGA 2ZVCA 2HUQA 2E0KA 1PJTA 2EGBA 2EH5A 2DV5A 2E4RA 1WYZA 2DSIA 2DSGA 2YBQA 3NUTA 2P6LA 2EL3A
chains in the Genus database with same CATH superfamily
2PCMA 2Z6RA 2PCIA 2DEKA 2E4NA 2ZVBA 2EGLA 3T0FA 2DXXA 5HW4A 2E17A 3HH1A 3F7TA 2P5FA 2DV3A 4EB3A 2EK3A 1VA0A 2HUTA 1S4DA 2P9DA 2OWUA 3T0GA 2EN5A 2P6KA 2DV4A 1PJSA 3ND1A 1V9AA 2EJZA 2DXVA 1VE2A 4MV5A 2EL1A 2EJKA 2EK2A 2E07A 4E16A 2EK4A 2E7RA 2E8HA 2EK7A 2PB4A 2DV7A 4H4DA 2EGSA 3ZGLA 2EHCA 1PJQA 2PB5A 3UV7A 2EH2A 2E15A 2QBUA 2EH4A 3SZOA 2EL0A 2EHLA 2DXWA 2ED5A 3UWMA 3UV6A 3FQ6A 3FFYA 3TIXB 2OWFA 2PCAA 1WDEA 4N7BA 3URKA 2P2XA 2ELEA 2E8QA 4MV0A 3DNFA 2P6IA 2ENIA 3KE8A 3UTDA 2HUVA 2NPNA 2E16A 3KEFA 2DSHA 2HUXA 2KYYA 1VCEA 2EMRA 3I4TA 2P5CA 2HR8A 1CBFA 4H4EA 3UV3A 2E0NA 2E08A 2PB6A 3KELA 2OWKA 2ELDA 2E8SA 3KEMA 3UTCA 2EEQA 2PCKA 3KWPA 2EL2A 2OWVA 2EJJA 1VHVA 2P6DA 4H4CA 3ZGNA 1WNGA 3LMMA 2BB3A 3NEIA 3NDCA 2E8RA 2EMUA 4MUYA 2ED3A 3SZLA 2EKAA 2CBFA 2OWGA 2PCHA 2YBOA 2PCGA 3KE9A 2ZVCA 2HUQA 3SZUA 2E0KA 1PJTA 2EGBA 2EH5A 2DV5A 2E4RA 1WYZA 2DSIA 2DSGA 2YBQA 3NUTA 2P6LA 4MUXA 2EL3A
chains in the Genus database with same CATH topology
2PCMA 2Z6RA 2PCIA 2DEKA 2E4NA 2ZVBA 2EGLA 3T0FA 2DXXA 5HW4A 2E17A 3HH1A 3F7TA 2P5FA 2DV3A 4EB3A 2EK3A 1VA0A 2HUTA 1S4DA 2P9DA 2OWUA 3T0GA 2EN5A 2P6KA 2DV4A 1PJSA 3ND1A 1V9AA 2EJZA 2DXVA 1VE2A 4MV5A 2EL1A 2EJKA 2EK2A 2E07A 4E16A 2EK4A 2E7RA 2E8HA 2EK7A 2PB4A 2DV7A 4H4DA 2EGSA 3ZGLA 2EHCA 1PJQA 2PB5A 3UV7A 2EH2A 2E15A 2QBUA 2EH4A 3SZOA 2EL0A 2EHLA 2DXWA 2ED5A 3UWMA 3UV6A 3FQ6A 3FFYA 3TIXB 2OWFA 2PCAA 1WDEA 4N7BA 3URKA 2P2XA 2ELEA 2E8QA 4MV0A 3DNFA 2P6IA 2ENIA 3KE8A 3UTDA 2HUVA 2NPNA 2E16A 3KEFA 2DSHA 2HUXA 2KYYA 1VCEA 2EMRA 3I4TA 2P5CA 2HR8A 1CBFA 4H4EA 3UV3A 2E0NA 2E08A 2PB6A 3KELA 2OWKA 2ELDA 2E8SA 3KEMA 3UTCA 2EEQA 2PCKA 3KWPA 2EL2A 2OWVA 2EJJA 1VHVA 2P6DA 4H4CA 3ZGNA 1WNGA 3LMMA 2BB3A 3NEIA 3NDCA 2E8RA 2EMUA 4MUYA 2ED3A 3SZLA 2EKAA 2CBFA 2OWGA 2PCHA 2YBOA 2PCGA 3KE9A 2ZVCA 2HUQA 3SZUA 2E0KA 1PJTA 2EGBA 2EH5A 2DV5A 2E4RA 1WYZA 2DSIA 2DSGA 2YBQA 3NUTA 2P6LA 4MUXA 2EL3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCM A;  2Z6R A;  2PCI A;  2DEK A;  2E4N A;  2ZVB A;  2EGL A;  2DXX A;  5HW4 A;  2E17 A;  3HH1 A;  2P5F A;  2DV3 A;  2EK3 A;  1VA0 A;  2HUT A;  1S4D A;  2P9D A;  2OWU A;  2EN5 A;  2P6K A;  2DV4 A;  1PJS A;  3ND1 A;  1V9A A;  2EJZ A;  2DXV A;  1VE2 A;  2EL1 A;  2EJK A;  2EK2 A;  2E07 A;  4E16 A;  2EK4 A;  2E7R A;  2E8H A;  2EK7 A;  2PB4 A;  2DV7 A;  2EGS A;  2EHC A;  1PJQ A;  2PB5 A;  2EH2 A;  2E15 A;  2QBU A;  2EH4 A;  2EL0 A;  2EHL A;  2DXW A;  2ED5 A;  3FQ6 A;  3FFY A;  2OWF A;  2PCA A;  1WDE A;  2P2X A;  2ELE A;  2E8Q A;  2P6I A;  2ENI A;  2HUV A;  2NPN A;  2E16 A;  2DSH A;  2HUX A;  1VCE A;  2EMR A;  3I4T A;  2P5C A;  2HR8 A;  1CBF A;  2E0N A;  2E08 A;  2PB6 A;  2OWK A;  2ELD A;  2E8S A;  2EEQ A;  2PCK A;  3KWP A;  2EL2 A;  2OWV A;  2EJJ A;  1VHV A;  2P6D A;  1WNG A;  3NEI A;  2BB3 A;  3NDC A;  2E8R A;  2EMU A;  2ED3 A;  2EKA A;  2CBF A;  2OWG A;  2PCH A;  2YBO A;  2PCG A;  2ZVC A;  2HUQ A;  2E0K A;  1PJT A;  2EGB A;  2EH5 A;  2DV5 A;  2E4R A;  1WYZ A;  2DSI A;  2DSG A;  2YBQ A;  3NUT A;  2P6L A;  2EL3 A; 
#chains in the Genus database with same CATH topology
 2PCM A;  2Z6R A;  2PCI A;  2DEK A;  2E4N A;  2ZVB A;  2EGL A;  3T0F A;  2DXX A;  5HW4 A;  2E17 A;  3HH1 A;  3F7T A;  2P5F A;  2DV3 A;  4EB3 A;  2EK3 A;  1VA0 A;  2HUT A;  1S4D A;  2P9D A;  2OWU A;  3T0G A;  2EN5 A;  2P6K A;  2DV4 A;  1PJS A;  3ND1 A;  1V9A A;  2EJZ A;  2DXV A;  1VE2 A;  4MV5 A;  2EL1 A;  2EJK A;  2EK2 A;  2E07 A;  4E16 A;  2EK4 A;  2E7R A;  2E8H A;  2EK7 A;  2PB4 A;  2DV7 A;  4H4D A;  2EGS A;  3ZGL A;  2EHC A;  1PJQ A;  2PB5 A;  3UV7 A;  2EH2 A;  2E15 A;  2QBU A;  2EH4 A;  3SZO A;  2EL0 A;  2EHL A;  2DXW A;  2ED5 A;  3UWM A;  3UV6 A;  3FQ6 A;  3FFY A;  3TIX B;  2OWF A;  2PCA A;  1WDE A;  4N7B A;  3URK A;  2P2X A;  2ELE A;  2E8Q A;  4MV0 A;  3DNF A;  2P6I A;  2ENI A;  3KE8 A;  3UTD A;  2HUV A;  2NPN A;  2E16 A;  3KEF A;  2DSH A;  2HUX A;  2KYY A;  1VCE A;  2EMR A;  3I4T A;  2P5C A;  2HR8 A;  1CBF A;  4H4E A;  3UV3 A;  2E0N A;  2E08 A;  2PB6 A;  3KEL A;  2OWK A;  2ELD A;  2E8S A;  3KEM A;  3UTC A;  2EEQ A;  2PCK A;  3KWP A;  2EL2 A;  2OWV A;  2EJJ A;  1VHV A;  2P6D A;  4H4C A;  3ZGN A;  1WNG A;  3LMM A;  2BB3 A;  3NEI A;  3NDC A;  2E8R A;  2EMU A;  4MUY A;  2ED3 A;  3SZL A;  2EKA A;  2CBF A;  2OWG A;  2PCH A;  2YBO A;  2PCG A;  3KE9 A;  2ZVC A;  2HUQ A;  3SZU A;  2E0K A;  1PJT A;  2EGB A;  2EH5 A;  2DV5 A;  2E4R A;  1WYZ A;  2DSI A;  2DSG A;  2YBQ A;  3NUT A;  2P6L A;  4MUX A;  2EL3 A; 
#chains in the Genus database with same CATH homology
 2PCM A;  2Z6R A;  2PCI A;  2DEK A;  2E4N A;  2ZVB A;  2EGL A;  3T0F A;  2DXX A;  5HW4 A;  2E17 A;  3HH1 A;  3F7T A;  2P5F A;  2DV3 A;  4EB3 A;  2EK3 A;  1VA0 A;  2HUT A;  1S4D A;  2P9D A;  2OWU A;  3T0G A;  2EN5 A;  2P6K A;  2DV4 A;  1PJS A;  3ND1 A;  1V9A A;  2EJZ A;  2DXV A;  1VE2 A;  4MV5 A;  2EL1 A;  2EJK A;  2EK2 A;  2E07 A;  4E16 A;  2EK4 A;  2E7R A;  2E8H A;  2EK7 A;  2PB4 A;  2DV7 A;  4H4D A;  2EGS A;  3ZGL A;  2EHC A;  1PJQ A;  2PB5 A;  3UV7 A;  2EH2 A;  2E15 A;  2QBU A;  2EH4 A;  3SZO A;  2EL0 A;  2EHL A;  2DXW A;  2ED5 A;  3UWM A;  3UV6 A;  3FQ6 A;  3FFY A;  3TIX B;  2OWF A;  2PCA A;  1WDE A;  4N7B A;  3URK A;  2P2X A;  2ELE A;  2E8Q A;  4MV0 A;  3DNF A;  2P6I A;  2ENI A;  3KE8 A;  3UTD A;  2HUV A;  2NPN A;  2E16 A;  3KEF A;  2DSH A;  2HUX A;  2KYY A;  1VCE A;  2EMR A;  3I4T A;  2P5C A;  2HR8 A;  1CBF A;  4H4E A;  3UV3 A;  2E0N A;  2E08 A;  2PB6 A;  3KEL A;  2OWK A;  2ELD A;  2E8S A;  3KEM A;  3UTC A;  2EEQ A;  2PCK A;  3KWP A;  2EL2 A;  2OWV A;  2EJJ A;  1VHV A;  2P6D A;  4H4C A;  3ZGN A;  1WNG A;  3LMM A;  2BB3 A;  3NEI A;  3NDC A;  2E8R A;  2EMU A;  4MUY A;  2ED3 A;  3SZL A;  2EKA A;  2CBF A;  2OWG A;  2PCH A;  2YBO A;  2PCG A;  3KE9 A;  2ZVC A;  2HUQ A;  3SZU A;  2E0K A;  1PJT A;  2EGB A;  2EH5 A;  2DV5 A;  2E4R A;  1WYZ A;  2DSI A;  2DSG A;  2YBQ A;  3NUT A;  2P6L A;  4MUX A;  2EL3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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