2E8QA

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (k19m)
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVMGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (K19M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 79
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8qA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8qA01
2EEQA 2OWFA 2OWGA 2DV5A 2E8QA 2OWVA 2EJJA 2DV4A 2DSHA 2EH2A 2E8HA 2YBQA 2EL2A 2HUQA 2PCGA 2EH5A 3KWPA 1S4DA 2QBUA 2EJKA 2HUVA 2EK4A 2P6LA 2DXXA 2P6IA 3HH1A 3ND1A 2ELEA 4E16A 2YBOA 2EK2A 2PCIA 1WDEA 2EL0A 2HR8A 2EMRA 3I4TA 2ELDA 3FQ6A 2E0NA 3NDCA 2P6KA 2OWUA 2P5FA 2E7RA 2EL3A 1VA0A 2ED5A 2E8RA 1CBFA 1PJSA 2ENIA 2E8SA 2EKAA 2EL1A 2HUTA 2ZVCA 2ED3A 2Z6RA 1PJQA 1WYZA 3NUTA 2DV3A 3FFYA 3NEIA 1VCEA 2EHCA 1WNGA 2EGBA 2E4RA 2P5CA 2PCMA 2E08A 2EGSA 2E15A 2PB6A 2E16A 2EN5A 1VE2A 2DEKA 2PB4A 2CBFA 2EK7A 2DXVA 2DV7A 2EH4A 2PCKA 2DSGA 2EGLA 2PB5A 2P2XA 2BB3A 1PJTA 2EJZA 2E0KA 2P6DA 1VHVA 2HUXA 2P9DA 1V9AA 2EK3A 2EMUA 2E17A 5HW4A 2E4NA 2EHLA 2ZVBA 2PCHA 2DSIA 2PCAA 2DXWA 2OWKA 2NPNA 2E07A
chains in the Genus database with same CATH superfamily
2EEQA 2OWFA 4MUXA 2OWGA 3TIXB 2DV5A 2E8QA 2OWVA 2EJJA 2DV4A 2DSHA 3SZOA 2EH2A 4H4EA 2E8HA 2YBQA 2EL2A 2HUQA 2PCGA 2EH5A 4H4DA 3KWPA 1S4DA 2QBUA 3DNFA 2EJKA 2HUVA 2EK4A 2P6LA 2DXXA 2P6IA 3HH1A 3ND1A 2ELEA 4E16A 2YBOA 2EK2A 2PCIA 1WDEA 2EL0A 3ZGNA 2HR8A 2EMRA 3I4TA 3T0FA 2ELDA 4MUYA 3FQ6A 2E0NA 4MV5A 3NDCA 2P6KA 2OWUA 3UV6A 3UV3A 2P5FA 2E7RA 3UWMA 2EL3A 3SZLA 3KELA 1VA0A 2ED5A 2E8RA 1CBFA 4N7BA 3T0GA 1PJSA 2ENIA 2E8SA 2EKAA 2EL1A 3SZUA 2HUTA 2ZVCA 3ZGLA 2ED3A 2Z6RA 1PJQA 1WYZA 3UV7A 3NUTA 3KE9A 2DV3A 3FFYA 3NEIA 1VCEA 2EHCA 3KEMA 1WNGA 2EGBA 2E4RA 2P5CA 2PCMA 3URKA 2E08A 2EGSA 2E15A 2PB6A 2E16A 3KEFA 2EN5A 1VE2A 4MV0A 2DEKA 2PB4A 2CBFA 2EK7A 2DXVA 2DV7A 2EH4A 3KE8A 2PCKA 2DSGA 2EGLA 2PB5A 2P2XA 2BB3A 1PJTA 2EJZA 2E0KA 2KYYA 1VHVA 2HUXA 2P6DA 1V9AA 2P9DA 3F7TA 2EK3A 2EMUA 2E17A 5HW4A 2E4NA 2EHLA 3LMMA 4H4CA 2ZVBA 2PCHA 3UTDA 2DSIA 2PCAA 2DXWA 2OWKA 3UTCA 2NPNA 4EB3A 2E07A
chains in the Genus database with same CATH topology
2EEQA 2OWFA 4MUXA 2OWGA 3TIXB 2DV5A 2E8QA 2OWVA 2EJJA 2DV4A 2DSHA 3SZOA 2EH2A 4H4EA 2E8HA 2YBQA 2EL2A 2HUQA 2PCGA 2EH5A 4H4DA 3KWPA 1S4DA 2QBUA 3DNFA 2EJKA 2HUVA 2EK4A 2P6LA 2DXXA 2P6IA 3HH1A 3ND1A 2ELEA 4E16A 2YBOA 2EK2A 2PCIA 1WDEA 2EL0A 3ZGNA 2HR8A 2EMRA 3I4TA 3T0FA 2ELDA 4MUYA 3FQ6A 2E0NA 4MV5A 3NDCA 2P6KA 2OWUA 3UV6A 3UV3A 2P5FA 2E7RA 3UWMA 2EL3A 3SZLA 3KELA 1VA0A 2ED5A 2E8RA 1CBFA 4N7BA 3T0GA 1PJSA 2ENIA 2E8SA 2EKAA 2EL1A 3SZUA 2HUTA 2ZVCA 3ZGLA 2ED3A 2Z6RA 1PJQA 1WYZA 3UV7A 3NUTA 3KE9A 2DV3A 3FFYA 3NEIA 1VCEA 2EHCA 3KEMA 1WNGA 2EGBA 2E4RA 2P5CA 2PCMA 3URKA 2E08A 2EGSA 2E15A 2PB6A 2E16A 3KEFA 2EN5A 1VE2A 4MV0A 2DEKA 2PB4A 2CBFA 2EK7A 2DXVA 2DV7A 2EH4A 3KE8A 2PCKA 2DSGA 2EGLA 2PB5A 2P2XA 2BB3A 1PJTA 2EJZA 2E0KA 2KYYA 1VHVA 2HUXA 2P6DA 1V9AA 2P9DA 3F7TA 2EK3A 2EMUA 2E17A 5HW4A 2E4NA 2EHLA 3LMMA 4H4CA 2ZVBA 2PCHA 3UTDA 2DSIA 2PCAA 2DXWA 2OWKA 3UTCA 2NPNA 4EB3A 2E07A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EEQ A;  2OWF A;  2OWG A;  2DV5 A;  2E8Q A;  2OWV A;  2EJJ A;  2DV4 A;  2DSH A;  2EH2 A;  2E8H A;  2YBQ A;  2EL2 A;  2HUQ A;  2PCG A;  2EH5 A;  3KWP A;  1S4D A;  2QBU A;  2EJK A;  2HUV A;  2EK4 A;  2P6L A;  2DXX A;  2P6I A;  3HH1 A;  3ND1 A;  2ELE A;  4E16 A;  2YBO A;  2EK2 A;  2PCI A;  1WDE A;  2EL0 A;  2HR8 A;  2EMR A;  3I4T A;  2ELD A;  3FQ6 A;  2E0N A;  3NDC A;  2P6K A;  2OWU A;  2P5F A;  2E7R A;  2EL3 A;  1VA0 A;  2ED5 A;  2E8R A;  1CBF A;  1PJS A;  2ENI A;  2E8S A;  2EKA A;  2EL1 A;  2HUT A;  2ZVC A;  2ED3 A;  2Z6R A;  1PJQ A;  1WYZ A;  3NUT A;  2DV3 A;  3FFY A;  3NEI A;  1VCE A;  2EHC A;  1WNG A;  2EGB A;  2E4R A;  2P5C A;  2PCM A;  2E08 A;  2EGS A;  2E15 A;  2PB6 A;  2E16 A;  2EN5 A;  1VE2 A;  2DEK A;  2PB4 A;  2CBF A;  2EK7 A;  2DXV A;  2DV7 A;  2EH4 A;  2PCK A;  2DSG A;  2EGL A;  2PB5 A;  2P2X A;  2BB3 A;  1PJT A;  2EJZ A;  2E0K A;  2P6D A;  1VHV A;  2HUX A;  2P9D A;  1V9A A;  2EK3 A;  2EMU A;  2E17 A;  5HW4 A;  2E4N A;  2EHL A;  2ZVB A;  2PCH A;  2DSI A;  2PCA A;  2DXW A;  2OWK A;  2NPN A;  2E07 A; 
#chains in the Genus database with same CATH topology
 2EEQ A;  2OWF A;  4MUX A;  2OWG A;  3TIX B;  2DV5 A;  2E8Q A;  2OWV A;  2EJJ A;  2DV4 A;  2DSH A;  3SZO A;  2EH2 A;  4H4E A;  2E8H A;  2YBQ A;  2EL2 A;  2HUQ A;  2PCG A;  2EH5 A;  4H4D A;  3KWP A;  1S4D A;  2QBU A;  3DNF A;  2EJK A;  2HUV A;  2EK4 A;  2P6L A;  2DXX A;  2P6I A;  3HH1 A;  3ND1 A;  2ELE A;  4E16 A;  2YBO A;  2EK2 A;  2PCI A;  1WDE A;  2EL0 A;  3ZGN A;  2HR8 A;  2EMR A;  3I4T A;  3T0F A;  2ELD A;  4MUY A;  3FQ6 A;  2E0N A;  4MV5 A;  3NDC A;  2P6K A;  2OWU A;  3UV6 A;  3UV3 A;  2P5F A;  2E7R A;  3UWM A;  2EL3 A;  3SZL A;  3KEL A;  1VA0 A;  2ED5 A;  2E8R A;  1CBF A;  4N7B A;  3T0G A;  1PJS A;  2ENI A;  2E8S A;  2EKA A;  2EL1 A;  3SZU A;  2HUT A;  2ZVC A;  3ZGL A;  2ED3 A;  2Z6R A;  1PJQ A;  1WYZ A;  3UV7 A;  3NUT A;  3KE9 A;  2DV3 A;  3FFY A;  3NEI A;  1VCE A;  2EHC A;  3KEM A;  1WNG A;  2EGB A;  2E4R A;  2P5C A;  2PCM A;  3URK A;  2E08 A;  2EGS A;  2E15 A;  2PB6 A;  2E16 A;  3KEF A;  2EN5 A;  1VE2 A;  4MV0 A;  2DEK A;  2PB4 A;  2CBF A;  2EK7 A;  2DXV A;  2DV7 A;  2EH4 A;  3KE8 A;  2PCK A;  2DSG A;  2EGL A;  2PB5 A;  2P2X A;  2BB3 A;  1PJT A;  2EJZ A;  2E0K A;  2KYY A;  1VHV A;  2HUX A;  2P6D A;  1V9A A;  2P9D A;  3F7T A;  2EK3 A;  2EMU A;  2E17 A;  5HW4 A;  2E4N A;  2EHL A;  3LMM A;  4H4C A;  2ZVB A;  2PCH A;  3UTD A;  2DSI A;  2PCA A;  2DXW A;  2OWK A;  3UTC A;  2NPN A;  4EB3 A;  2E07 A; 
#chains in the Genus database with same CATH homology
 2EEQ A;  2OWF A;  4MUX A;  2OWG A;  3TIX B;  2DV5 A;  2E8Q A;  2OWV A;  2EJJ A;  2DV4 A;  2DSH A;  3SZO A;  2EH2 A;  4H4E A;  2E8H A;  2YBQ A;  2EL2 A;  2HUQ A;  2PCG A;  2EH5 A;  4H4D A;  3KWP A;  1S4D A;  2QBU A;  3DNF A;  2EJK A;  2HUV A;  2EK4 A;  2P6L A;  2DXX A;  2P6I A;  3HH1 A;  3ND1 A;  2ELE A;  4E16 A;  2YBO A;  2EK2 A;  2PCI A;  1WDE A;  2EL0 A;  3ZGN A;  2HR8 A;  2EMR A;  3I4T A;  3T0F A;  2ELD A;  4MUY A;  3FQ6 A;  2E0N A;  4MV5 A;  3NDC A;  2P6K A;  2OWU A;  3UV6 A;  3UV3 A;  2P5F A;  2E7R A;  3UWM A;  2EL3 A;  3SZL A;  3KEL A;  1VA0 A;  2ED5 A;  2E8R A;  1CBF A;  4N7B A;  3T0G A;  1PJS A;  2ENI A;  2E8S A;  2EKA A;  2EL1 A;  3SZU A;  2HUT A;  2ZVC A;  3ZGL A;  2ED3 A;  2Z6R A;  1PJQ A;  1WYZ A;  3UV7 A;  3NUT A;  3KE9 A;  2DV3 A;  3FFY A;  3NEI A;  1VCE A;  2EHC A;  3KEM A;  1WNG A;  2EGB A;  2E4R A;  2P5C A;  2PCM A;  3URK A;  2E08 A;  2EGS A;  2E15 A;  2PB6 A;  2E16 A;  3KEF A;  2EN5 A;  1VE2 A;  4MV0 A;  2DEK A;  2PB4 A;  2CBF A;  2EK7 A;  2DXV A;  2DV7 A;  2EH4 A;  3KE8 A;  2PCK A;  2DSG A;  2EGL A;  2PB5 A;  2P2X A;  2BB3 A;  1PJT A;  2EJZ A;  2E0K A;  2KYY A;  1VHV A;  2HUX A;  2P6D A;  1V9A A;  2P9D A;  3F7T A;  2EK3 A;  2EMU A;  2E17 A;  5HW4 A;  2E4N A;  2EHL A;  3LMM A;  4H4C A;  2ZVB A;  2PCH A;  3UTD A;  2DSI A;  2PCA A;  2DXW A;  2OWK A;  3UTC A;  2NPN A;  4EB3 A;  2E07 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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