2E8RA

Structural study of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAMKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 87
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8rA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8rA01
3KWPA 2HUQA 5HW4A 2E15A 2EK2A 2EL0A 2HUXA 2EL2A 2P5CA 2EJKA 2PB6A 2E4RA 2CBFA 2DSIA 3I4TA 1WDEA 3FQ6A 2OWVA 2E08A 2OWKA 1VHVA 2E0NA 2DEKA 2P2XA 2DV3A 2OWFA 2EL1A 2ENIA 2EK7A 2DSGA 4E16A 2EH2A 2EH5A 2PCIA 2ELDA 2E8HA 2ED5A 2ZVCA 2EN5A 2DXXA 2DV5A 2EH4A 2P6LA 2E7RA 2E8QA 2DV4A 2PCAA 2E0KA 1WYZA 2PCMA 2EHCA 3NUTA 2YBOA 1V9AA 2E8RA 2ELEA 3NEIA 2E17A 2HUVA 2OWGA 2EGSA 1CBFA 2E4NA 2EGLA 3NDCA 2Z6RA 2PCGA 2EMUA 2EK3A 2E16A 1PJQA 2EK4A 2BB3A 1PJSA 2YBQA 2HR8A 2EKAA 2P6IA 2EEQA 2QBUA 2EJJA 2P6KA 2P6DA 2PB4A 2P9DA 2ED3A 2EGBA 2PCKA 2DXWA 2EMRA 2E8SA 2EJZA 2ZVBA 2P5FA 3FFYA 1VE2A 2DSHA 1PJTA 2EHLA 2DXVA 2HUTA 3HH1A 2EL3A 1WNGA 1VA0A 3ND1A 2PB5A 2NPNA 2OWUA 1S4DA 1VCEA 2PCHA 2DV7A 2E07A
chains in the Genus database with same CATH superfamily
3KWPA 2HUQA 5HW4A 2E15A 4H4CA 2EK2A 2EL0A 2HUXA 2EL2A 2P5CA 3UV3A 2EJKA 2PB6A 2E4RA 3F7TA 2CBFA 3ZGNA 2DSIA 3I4TA 1WDEA 3FQ6A 2OWVA 2E08A 2OWKA 1VHVA 2E0NA 2DEKA 2P2XA 2DV3A 2OWFA 2EL1A 2ENIA 3URKA 2EK7A 2DSGA 3KEMA 4EB3A 4E16A 4MUYA 3T0FA 2EH2A 4MV5A 2EH5A 2PCIA 2ELDA 2E8HA 3KEFA 4H4DA 4H4EA 2ED5A 2ZVCA 3UTCA 2EN5A 2DXXA 2DV5A 2EH4A 2P6LA 2E7RA 2E8QA 2DV4A 2PCAA 3SZUA 2E0KA 1WYZA 2PCMA 2EHCA 3NUTA 2YBOA 1V9AA 2E8RA 2ELEA 3NEIA 2E17A 2HUVA 3TIXB 2OWGA 2EGSA 1CBFA 3T0GA 2E4NA 2EGLA 3NDCA 2Z6RA 4MV0A 2PCGA 2EMUA 2EK3A 2E16A 1PJQA 2EK4A 3UWMA 2BB3A 1PJSA 2YBQA 3SZLA 3UTDA 2HR8A 2EKAA 2P6IA 2EEQA 2QBUA 3ZGLA 3LMMA 2EJJA 2P6KA 2P6DA 3KE9A 2PB4A 3DNFA 2P9DA 2ED3A 2EGBA 2PCKA 2KYYA 2DXWA 2EMRA 2E8SA 2EJZA 2ZVBA 2P5FA 3KE8A 3FFYA 1VE2A 2DSHA 1PJTA 4N7BA 3UV7A 2EHLA 2DXVA 3SZOA 2HUTA 3HH1A 2EL3A 1WNGA 1VA0A 3ND1A 2PB5A 2NPNA 2OWUA 1S4DA 4MUXA 1VCEA 2PCHA 3UV6A 2DV7A 2E07A 3KELA
chains in the Genus database with same CATH topology
3KWPA 2HUQA 5HW4A 2E15A 4H4CA 2EK2A 2EL0A 2HUXA 2EL2A 2P5CA 3UV3A 2EJKA 2PB6A 2E4RA 3F7TA 2CBFA 3ZGNA 2DSIA 3I4TA 1WDEA 3FQ6A 2OWVA 2E08A 2OWKA 1VHVA 2E0NA 2DEKA 2P2XA 2DV3A 2OWFA 2EL1A 2ENIA 3URKA 2EK7A 2DSGA 3KEMA 4EB3A 4E16A 4MUYA 3T0FA 2EH2A 4MV5A 2EH5A 2PCIA 2ELDA 2E8HA 3KEFA 4H4DA 4H4EA 2ED5A 2ZVCA 3UTCA 2EN5A 2DXXA 2DV5A 2EH4A 2P6LA 2E7RA 2E8QA 2DV4A 2PCAA 3SZUA 2E0KA 1WYZA 2PCMA 2EHCA 3NUTA 2YBOA 1V9AA 2E8RA 2ELEA 3NEIA 2E17A 2HUVA 3TIXB 2OWGA 2EGSA 1CBFA 3T0GA 2E4NA 2EGLA 3NDCA 2Z6RA 4MV0A 2PCGA 2EMUA 2EK3A 2E16A 1PJQA 2EK4A 3UWMA 2BB3A 1PJSA 2YBQA 3SZLA 3UTDA 2HR8A 2EKAA 2P6IA 2EEQA 2QBUA 3ZGLA 3LMMA 2EJJA 2P6KA 2P6DA 3KE9A 2PB4A 3DNFA 2P9DA 2ED3A 2EGBA 2PCKA 2KYYA 2DXWA 2EMRA 2E8SA 2EJZA 2ZVBA 2P5FA 3KE8A 3FFYA 1VE2A 2DSHA 1PJTA 4N7BA 3UV7A 2EHLA 2DXVA 3SZOA 2HUTA 3HH1A 2EL3A 1WNGA 1VA0A 3ND1A 2PB5A 2NPNA 2OWUA 1S4DA 4MUXA 1VCEA 2PCHA 3UV6A 2DV7A 2E07A 3KELA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KWP A;  2HUQ A;  5HW4 A;  2E15 A;  2EK2 A;  2EL0 A;  2HUX A;  2EL2 A;  2P5C A;  2EJK A;  2PB6 A;  2E4R A;  2CBF A;  2DSI A;  3I4T A;  1WDE A;  3FQ6 A;  2OWV A;  2E08 A;  2OWK A;  1VHV A;  2E0N A;  2DEK A;  2P2X A;  2DV3 A;  2OWF A;  2EL1 A;  2ENI A;  2EK7 A;  2DSG A;  4E16 A;  2EH2 A;  2EH5 A;  2PCI A;  2ELD A;  2E8H A;  2ED5 A;  2ZVC A;  2EN5 A;  2DXX A;  2DV5 A;  2EH4 A;  2P6L A;  2E7R A;  2E8Q A;  2DV4 A;  2PCA A;  2E0K A;  1WYZ A;  2PCM A;  2EHC A;  3NUT A;  2YBO A;  1V9A A;  2E8R A;  2ELE A;  3NEI A;  2E17 A;  2HUV A;  2OWG A;  2EGS A;  1CBF A;  2E4N A;  2EGL A;  3NDC A;  2Z6R A;  2PCG A;  2EMU A;  2EK3 A;  2E16 A;  1PJQ A;  2EK4 A;  2BB3 A;  1PJS A;  2YBQ A;  2HR8 A;  2EKA A;  2P6I A;  2EEQ A;  2QBU A;  2EJJ A;  2P6K A;  2P6D A;  2PB4 A;  2P9D A;  2ED3 A;  2EGB A;  2PCK A;  2DXW A;  2EMR A;  2E8S A;  2EJZ A;  2ZVB A;  2P5F A;  3FFY A;  1VE2 A;  2DSH A;  1PJT A;  2EHL A;  2DXV A;  2HUT A;  3HH1 A;  2EL3 A;  1WNG A;  1VA0 A;  3ND1 A;  2PB5 A;  2NPN A;  2OWU A;  1S4D A;  1VCE A;  2PCH A;  2DV7 A;  2E07 A; 
#chains in the Genus database with same CATH topology
 3KWP A;  2HUQ A;  5HW4 A;  2E15 A;  4H4C A;  2EK2 A;  2EL0 A;  2HUX A;  2EL2 A;  2P5C A;  3UV3 A;  2EJK A;  2PB6 A;  2E4R A;  3F7T A;  2CBF A;  3ZGN A;  2DSI A;  3I4T A;  1WDE A;  3FQ6 A;  2OWV A;  2E08 A;  2OWK A;  1VHV A;  2E0N A;  2DEK A;  2P2X A;  2DV3 A;  2OWF A;  2EL1 A;  2ENI A;  3URK A;  2EK7 A;  2DSG A;  3KEM A;  4EB3 A;  4E16 A;  4MUY A;  3T0F A;  2EH2 A;  4MV5 A;  2EH5 A;  2PCI A;  2ELD A;  2E8H A;  3KEF A;  4H4D A;  4H4E A;  2ED5 A;  2ZVC A;  3UTC A;  2EN5 A;  2DXX A;  2DV5 A;  2EH4 A;  2P6L A;  2E7R A;  2E8Q A;  2DV4 A;  2PCA A;  3SZU A;  2E0K A;  1WYZ A;  2PCM A;  2EHC A;  3NUT A;  2YBO A;  1V9A A;  2E8R A;  2ELE A;  3NEI A;  2E17 A;  2HUV A;  3TIX B;  2OWG A;  2EGS A;  1CBF A;  3T0G A;  2E4N A;  2EGL A;  3NDC A;  2Z6R A;  4MV0 A;  2PCG A;  2EMU A;  2EK3 A;  2E16 A;  1PJQ A;  2EK4 A;  3UWM A;  2BB3 A;  1PJS A;  2YBQ A;  3SZL A;  3UTD A;  2HR8 A;  2EKA A;  2P6I A;  2EEQ A;  2QBU A;  3ZGL A;  3LMM A;  2EJJ A;  2P6K A;  2P6D A;  3KE9 A;  2PB4 A;  3DNF A;  2P9D A;  2ED3 A;  2EGB A;  2PCK A;  2KYY A;  2DXW A;  2EMR A;  2E8S A;  2EJZ A;  2ZVB A;  2P5F A;  3KE8 A;  3FFY A;  1VE2 A;  2DSH A;  1PJT A;  4N7B A;  3UV7 A;  2EHL A;  2DXV A;  3SZO A;  2HUT A;  3HH1 A;  2EL3 A;  1WNG A;  1VA0 A;  3ND1 A;  2PB5 A;  2NPN A;  2OWU A;  1S4D A;  4MUX A;  1VCE A;  2PCH A;  3UV6 A;  2DV7 A;  2E07 A;  3KEL A; 
#chains in the Genus database with same CATH homology
 3KWP A;  2HUQ A;  5HW4 A;  2E15 A;  4H4C A;  2EK2 A;  2EL0 A;  2HUX A;  2EL2 A;  2P5C A;  3UV3 A;  2EJK A;  2PB6 A;  2E4R A;  3F7T A;  2CBF A;  3ZGN A;  2DSI A;  3I4T A;  1WDE A;  3FQ6 A;  2OWV A;  2E08 A;  2OWK A;  1VHV A;  2E0N A;  2DEK A;  2P2X A;  2DV3 A;  2OWF A;  2EL1 A;  2ENI A;  3URK A;  2EK7 A;  2DSG A;  3KEM A;  4EB3 A;  4E16 A;  4MUY A;  3T0F A;  2EH2 A;  4MV5 A;  2EH5 A;  2PCI A;  2ELD A;  2E8H A;  3KEF A;  4H4D A;  4H4E A;  2ED5 A;  2ZVC A;  3UTC A;  2EN5 A;  2DXX A;  2DV5 A;  2EH4 A;  2P6L A;  2E7R A;  2E8Q A;  2DV4 A;  2PCA A;  3SZU A;  2E0K A;  1WYZ A;  2PCM A;  2EHC A;  3NUT A;  2YBO A;  1V9A A;  2E8R A;  2ELE A;  3NEI A;  2E17 A;  2HUV A;  3TIX B;  2OWG A;  2EGS A;  1CBF A;  3T0G A;  2E4N A;  2EGL A;  3NDC A;  2Z6R A;  4MV0 A;  2PCG A;  2EMU A;  2EK3 A;  2E16 A;  1PJQ A;  2EK4 A;  3UWM A;  2BB3 A;  1PJS A;  2YBQ A;  3SZL A;  3UTD A;  2HR8 A;  2EKA A;  2P6I A;  2EEQ A;  2QBU A;  3ZGL A;  3LMM A;  2EJJ A;  2P6K A;  2P6D A;  3KE9 A;  2PB4 A;  3DNF A;  2P9D A;  2ED3 A;  2EGB A;  2PCK A;  2KYY A;  2DXW A;  2EMR A;  2E8S A;  2EJZ A;  2ZVB A;  2P5F A;  3KE8 A;  3FFY A;  1VE2 A;  2DSH A;  1PJT A;  4N7B A;  3UV7 A;  2EHL A;  2DXV A;  3SZO A;  2HUT A;  3HH1 A;  2EL3 A;  1WNG A;  1VA0 A;  3ND1 A;  2PB5 A;  2NPN A;  2OWU A;  1S4D A;  4MUX A;  1VCE A;  2PCH A;  3UV6 A;  2DV7 A;  2E07 A;  3KEL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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