2E8SA

Structural study of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSAMVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii ot3
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8sA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8sA01
3NDCA 2OWGA 2EL2A 2OWVA 2E8SA 2ZVBA 2HUVA 2E7RA 1PJTA 1PJQA 2EHLA 2ED3A 3I4TA 2EK4A 2EGLA 2P6IA 2PB6A 3HH1A 2ED5A 2DSGA 2EJJA 2EL0A 2HUTA 2EMUA 1VE2A 2E16A 2DV5A 2HUQA 2DXXA 1V9AA 2P5FA 1CBFA 1WNGA 2EH4A 2NPNA 2EGSA 2ELDA 2E4RA 2HUXA 2PCMA 2EK2A 2YBQA 4E16A 1WYZA 2BB3A 3ND1A 2Z6RA 2E8RA 2DV4A 2E4NA 2EMRA 2EN5A 2P6DA 1S4DA 2ZVCA 2E17A 3FFYA 1WDEA 5HW4A 3NUTA 2E15A 2OWUA 2EJZA 3FQ6A 2EK3A 2OWFA 2PB5A 3KWPA 2P6KA 2PCGA 2EH5A 2EEQA 3NEIA 2HR8A 2YBOA 2ENIA 2DSIA 2DXWA 2OWKA 1PJSA 2E8QA 1VA0A 2PCKA 2EJKA 2PCHA 2EKAA 2EL1A 2P5CA 2EHCA 2CBFA 2P6LA 2P2XA 2PB4A 2EGBA 2E0NA 2E08A 2EL3A 2P9DA 1VCEA 2DEKA 2DSHA 2DV3A 2E07A 2E8HA 2ELEA 2PCAA 2QBUA 2E0KA 2EK7A 2PCIA 2EH2A 2DV7A 1VHVA 2DXVA
chains in the Genus database with same CATH superfamily
3NDCA 2OWGA 3UV7A 3ZGLA 2EL2A 2OWVA 4EB3A 2E8SA 2ZVBA 2HUVA 2E7RA 4MV0A 1PJTA 3T0FA 1PJQA 2EHLA 2ED3A 3I4TA 2EK4A 2EGLA 2P6IA 3SZOA 3TIXB 2PB6A 3HH1A 3UV3A 2ED5A 2DSGA 2EJJA 2EL0A 2HUTA 2EMUA 1VE2A 2E16A 2DV5A 3UTCA 2HUQA 2DXXA 1V9AA 3KE8A 2P5FA 3ZGNA 1CBFA 1WNGA 2EH4A 2NPNA 3T0GA 2EGSA 2ELDA 4MV5A 2E4RA 2HUXA 3KELA 2PCMA 2EK2A 2YBQA 4E16A 1WYZA 2BB3A 3KEMA 3ND1A 2Z6RA 2E8RA 2DV4A 4N7BA 2E4NA 2EMRA 2EN5A 2P6DA 1S4DA 3DNFA 3KEFA 2ZVCA 3UWMA 3SZUA 2E17A 3FFYA 1WDEA 5HW4A 3NUTA 2E15A 3UTDA 2OWUA 2EJZA 3FQ6A 2EK3A 2OWFA 2PB5A 3KWPA 2P6KA 2PCGA 2EH5A 2EEQA 3NEIA 2HR8A 3F7TA 2YBOA 3URKA 2ENIA 3LMMA 2DSIA 2DXWA 2OWKA 1PJSA 2E8QA 1VA0A 2PCKA 2EJKA 3SZLA 2PCHA 3KE9A 2EKAA 2EL1A 2P5CA 2EHCA 2CBFA 2P6LA 2P2XA 2PB4A 2EGBA 2E0NA 4H4EA 2E08A 2EL3A 2P9DA 1VCEA 2DEKA 4H4CA 2DSHA 4H4DA 3UV6A 2DV3A 2E07A 2E8HA 2ELEA 2KYYA 2PCAA 2QBUA 2E0KA 2EK7A 4MUYA 2PCIA 2EH2A 4MUXA 2DV7A 1VHVA 2DXVA
chains in the Genus database with same CATH topology
3NDCA 2OWGA 3UV7A 3ZGLA 2EL2A 2OWVA 4EB3A 2E8SA 2ZVBA 2HUVA 2E7RA 4MV0A 1PJTA 3T0FA 1PJQA 2EHLA 2ED3A 3I4TA 2EK4A 2EGLA 2P6IA 3SZOA 3TIXB 2PB6A 3HH1A 3UV3A 2ED5A 2DSGA 2EJJA 2EL0A 2HUTA 2EMUA 1VE2A 2E16A 2DV5A 3UTCA 2HUQA 2DXXA 1V9AA 3KE8A 2P5FA 3ZGNA 1CBFA 1WNGA 2EH4A 2NPNA 3T0GA 2EGSA 2ELDA 4MV5A 2E4RA 2HUXA 3KELA 2PCMA 2EK2A 2YBQA 4E16A 1WYZA 2BB3A 3KEMA 3ND1A 2Z6RA 2E8RA 2DV4A 4N7BA 2E4NA 2EMRA 2EN5A 2P6DA 1S4DA 3DNFA 3KEFA 2ZVCA 3UWMA 3SZUA 2E17A 3FFYA 1WDEA 5HW4A 3NUTA 2E15A 3UTDA 2OWUA 2EJZA 3FQ6A 2EK3A 2OWFA 2PB5A 3KWPA 2P6KA 2PCGA 2EH5A 2EEQA 3NEIA 2HR8A 3F7TA 2YBOA 3URKA 2ENIA 3LMMA 2DSIA 2DXWA 2OWKA 1PJSA 2E8QA 1VA0A 2PCKA 2EJKA 3SZLA 2PCHA 3KE9A 2EKAA 2EL1A 2P5CA 2EHCA 2CBFA 2P6LA 2P2XA 2PB4A 2EGBA 2E0NA 4H4EA 2E08A 2EL3A 2P9DA 1VCEA 2DEKA 4H4CA 2DSHA 4H4DA 3UV6A 2DV3A 2E07A 2E8HA 2ELEA 2KYYA 2PCAA 2QBUA 2E0KA 2EK7A 4MUYA 2PCIA 2EH2A 4MUXA 2DV7A 1VHVA 2DXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NDC A;  2OWG A;  2EL2 A;  2OWV A;  2E8S A;  2ZVB A;  2HUV A;  2E7R A;  1PJT A;  1PJQ A;  2EHL A;  2ED3 A;  3I4T A;  2EK4 A;  2EGL A;  2P6I A;  2PB6 A;  3HH1 A;  2ED5 A;  2DSG A;  2EJJ A;  2EL0 A;  2HUT A;  2EMU A;  1VE2 A;  2E16 A;  2DV5 A;  2HUQ A;  2DXX A;  1V9A A;  2P5F A;  1CBF A;  1WNG A;  2EH4 A;  2NPN A;  2EGS A;  2ELD A;  2E4R A;  2HUX A;  2PCM A;  2EK2 A;  2YBQ A;  4E16 A;  1WYZ A;  2BB3 A;  3ND1 A;  2Z6R A;  2E8R A;  2DV4 A;  2E4N A;  2EMR A;  2EN5 A;  2P6D A;  1S4D A;  2ZVC A;  2E17 A;  3FFY A;  1WDE A;  5HW4 A;  3NUT A;  2E15 A;  2OWU A;  2EJZ A;  3FQ6 A;  2EK3 A;  2OWF A;  2PB5 A;  3KWP A;  2P6K A;  2PCG A;  2EH5 A;  2EEQ A;  3NEI A;  2HR8 A;  2YBO A;  2ENI A;  2DSI A;  2DXW A;  2OWK A;  1PJS A;  2E8Q A;  1VA0 A;  2PCK A;  2EJK A;  2PCH A;  2EKA A;  2EL1 A;  2P5C A;  2EHC A;  2CBF A;  2P6L A;  2P2X A;  2PB4 A;  2EGB A;  2E0N A;  2E08 A;  2EL3 A;  2P9D A;  1VCE A;  2DEK A;  2DSH A;  2DV3 A;  2E07 A;  2E8H A;  2ELE A;  2PCA A;  2QBU A;  2E0K A;  2EK7 A;  2PCI A;  2EH2 A;  2DV7 A;  1VHV A;  2DXV A; 
#chains in the Genus database with same CATH topology
 3NDC A;  2OWG A;  3UV7 A;  3ZGL A;  2EL2 A;  2OWV A;  4EB3 A;  2E8S A;  2ZVB A;  2HUV A;  2E7R A;  4MV0 A;  1PJT A;  3T0F A;  1PJQ A;  2EHL A;  2ED3 A;  3I4T A;  2EK4 A;  2EGL A;  2P6I A;  3SZO A;  3TIX B;  2PB6 A;  3HH1 A;  3UV3 A;  2ED5 A;  2DSG A;  2EJJ A;  2EL0 A;  2HUT A;  2EMU A;  1VE2 A;  2E16 A;  2DV5 A;  3UTC A;  2HUQ A;  2DXX A;  1V9A A;  3KE8 A;  2P5F A;  3ZGN A;  1CBF A;  1WNG A;  2EH4 A;  2NPN A;  3T0G A;  2EGS A;  2ELD A;  4MV5 A;  2E4R A;  2HUX A;  3KEL A;  2PCM A;  2EK2 A;  2YBQ A;  4E16 A;  1WYZ A;  2BB3 A;  3KEM A;  3ND1 A;  2Z6R A;  2E8R A;  2DV4 A;  4N7B A;  2E4N A;  2EMR A;  2EN5 A;  2P6D A;  1S4D A;  3DNF A;  3KEF A;  2ZVC A;  3UWM A;  3SZU A;  2E17 A;  3FFY A;  1WDE A;  5HW4 A;  3NUT A;  2E15 A;  3UTD A;  2OWU A;  2EJZ A;  3FQ6 A;  2EK3 A;  2OWF A;  2PB5 A;  3KWP A;  2P6K A;  2PCG A;  2EH5 A;  2EEQ A;  3NEI A;  2HR8 A;  3F7T A;  2YBO A;  3URK A;  2ENI A;  3LMM A;  2DSI A;  2DXW A;  2OWK A;  1PJS A;  2E8Q A;  1VA0 A;  2PCK A;  2EJK A;  3SZL A;  2PCH A;  3KE9 A;  2EKA A;  2EL1 A;  2P5C A;  2EHC A;  2CBF A;  2P6L A;  2P2X A;  2PB4 A;  2EGB A;  2E0N A;  4H4E A;  2E08 A;  2EL3 A;  2P9D A;  1VCE A;  2DEK A;  4H4C A;  2DSH A;  4H4D A;  3UV6 A;  2DV3 A;  2E07 A;  2E8H A;  2ELE A;  2KYY A;  2PCA A;  2QBU A;  2E0K A;  2EK7 A;  4MUY A;  2PCI A;  2EH2 A;  4MUX A;  2DV7 A;  1VHV A;  2DXV A; 
#chains in the Genus database with same CATH homology
 3NDC A;  2OWG A;  3UV7 A;  3ZGL A;  2EL2 A;  2OWV A;  4EB3 A;  2E8S A;  2ZVB A;  2HUV A;  2E7R A;  4MV0 A;  1PJT A;  3T0F A;  1PJQ A;  2EHL A;  2ED3 A;  3I4T A;  2EK4 A;  2EGL A;  2P6I A;  3SZO A;  3TIX B;  2PB6 A;  3HH1 A;  3UV3 A;  2ED5 A;  2DSG A;  2EJJ A;  2EL0 A;  2HUT A;  2EMU A;  1VE2 A;  2E16 A;  2DV5 A;  3UTC A;  2HUQ A;  2DXX A;  1V9A A;  3KE8 A;  2P5F A;  3ZGN A;  1CBF A;  1WNG A;  2EH4 A;  2NPN A;  3T0G A;  2EGS A;  2ELD A;  4MV5 A;  2E4R A;  2HUX A;  3KEL A;  2PCM A;  2EK2 A;  2YBQ A;  4E16 A;  1WYZ A;  2BB3 A;  3KEM A;  3ND1 A;  2Z6R A;  2E8R A;  2DV4 A;  4N7B A;  2E4N A;  2EMR A;  2EN5 A;  2P6D A;  1S4D A;  3DNF A;  3KEF A;  2ZVC A;  3UWM A;  3SZU A;  2E17 A;  3FFY A;  1WDE A;  5HW4 A;  3NUT A;  2E15 A;  3UTD A;  2OWU A;  2EJZ A;  3FQ6 A;  2EK3 A;  2OWF A;  2PB5 A;  3KWP A;  2P6K A;  2PCG A;  2EH5 A;  2EEQ A;  3NEI A;  2HR8 A;  3F7T A;  2YBO A;  3URK A;  2ENI A;  3LMM A;  2DSI A;  2DXW A;  2OWK A;  1PJS A;  2E8Q A;  1VA0 A;  2PCK A;  2EJK A;  3SZL A;  2PCH A;  3KE9 A;  2EKA A;  2EL1 A;  2P5C A;  2EHC A;  2CBF A;  2P6L A;  2P2X A;  2PB4 A;  2EGB A;  2E0N A;  4H4E A;  2E08 A;  2EL3 A;  2P9D A;  1VCE A;  2DEK A;  4H4C A;  2DSH A;  4H4D A;  3UV6 A;  2DV3 A;  2E07 A;  2E8H A;  2ELE A;  2KYY A;  2PCA A;  2QBU A;  2E0K A;  2EK7 A;  4MUY A;  2PCI A;  2EH2 A;  4MUX A;  2DV7 A;  1VHV A;  2DXV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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