2E8SA

Structural study of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSAMVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii ot3
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8sA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8sA01
2E8QA 2DV3A 2EK7A 2EK3A 2EL2A 2P6LA 3NDCA 3ND1A 3NEIA 2EHCA 2PB5A 2EL0A 3KWPA 2BB3A 3HH1A 2E4NA 2EK4A 3FQ6A 2HR8A 2PCHA 1S4DA 2ZVCA 1V9AA 2EN5A 2OWGA 2ZVBA 2ED3A 2ED5A 2P6IA 2CBFA 2YBOA 2DXXA 2EJZA 2P9DA 2P6DA 2DSIA 1PJQA 2EH4A 2P5FA 2E07A 2E17A 2OWVA 2DV4A 2E4RA 2YBQA 2PCKA 2PCMA 3FFYA 1WNGA 2PCGA 2DEKA 2DSGA 2PB6A 2E8HA 2EKAA 2NPNA 1PJTA 2E8SA 2E15A 2OWFA 2HUQA 2DV5A 2HUTA 1VE2A 1VHVA 2EK2A 1CBFA 2P6KA 2EEQA 2EGBA 2EL3A 2EGLA 2E0NA 2E08A 2DSHA 2E0KA 2DXVA 3NUTA 3I4TA 2EL1A 2ELDA 2PCAA 2EH2A 2QBUA 2PB4A 2EJKA 2P5CA 2EJJA 2E8RA 2EMRA 2P2XA 1PJSA 2E16A 2Z6RA 2HUVA 2OWKA 2ENIA 2DXWA 2EGSA 2EMUA 4E16A 1VA0A 2E7RA 2EH5A 1WDEA 2HUXA 1WYZA 2ELEA 2OWUA 5HW4A 1VCEA 2PCIA 2EHLA 2DV7A
chains in the Genus database with same CATH superfamily
2E8QA 2DV3A 2EK7A 4MV0A 2EK3A 2EL2A 2P6LA 3NDCA 3ND1A 3NEIA 2EHCA 2PB5A 2EL0A 3KWPA 2BB3A 3HH1A 2E4NA 2EK4A 3FQ6A 2HR8A 2PCHA 3UV6A 1S4DA 2ZVCA 2KYYA 1V9AA 2EN5A 2OWGA 2ZVBA 2ED3A 2ED5A 4N7BA 2P6IA 4H4DA 2CBFA 2YBOA 2DXXA 2EJZA 2P9DA 2P6DA 2DSIA 1PJQA 2EH4A 2P5FA 2E07A 2E17A 2OWVA 3KE9A 2DV4A 2E4RA 2YBQA 2PCKA 4MV5A 3ZGLA 2PCMA 3UTCA 4H4EA 3FFYA 1WNGA 2PCGA 2DEKA 4MUXA 3LMMA 2DSGA 2PB6A 3SZUA 4MUYA 2E8HA 3T0GA 2EKAA 2NPNA 1PJTA 2E8SA 4EB3A 3UV7A 2E15A 2OWFA 2HUQA 2DV5A 2HUTA 3UWMA 1VE2A 3KEFA 4H4CA 1VHVA 2EK2A 1CBFA 2P6KA 3SZLA 2EEQA 2EGBA 2EL3A 3T0FA 2EGLA 3DNFA 2E0NA 2E08A 3F7TA 2DSHA 2E0KA 2DXVA 3UV3A 3NUTA 3I4TA 2EL1A 2ELDA 3KEMA 3UTDA 3KELA 2PCAA 2EH2A 2QBUA 2PB4A 2EJKA 3SZOA 2P5CA 2EJJA 2E8RA 2EMRA 2P2XA 1PJSA 2E16A 2Z6RA 2HUVA 2OWKA 3ZGNA 2ENIA 2DXWA 3KE8A 2EGSA 3URKA 2EMUA 4E16A 1VA0A 2E7RA 2EH5A 1WDEA 2HUXA 1WYZA 2ELEA 2OWUA 5HW4A 3TIXB 1VCEA 2PCIA 2EHLA 2DV7A
chains in the Genus database with same CATH topology
2E8QA 2DV3A 2EK7A 4MV0A 2EK3A 2EL2A 2P6LA 3NDCA 3ND1A 3NEIA 2EHCA 2PB5A 2EL0A 3KWPA 2BB3A 3HH1A 2E4NA 2EK4A 3FQ6A 2HR8A 2PCHA 3UV6A 1S4DA 2ZVCA 2KYYA 1V9AA 2EN5A 2OWGA 2ZVBA 2ED3A 2ED5A 4N7BA 2P6IA 4H4DA 2CBFA 2YBOA 2DXXA 2EJZA 2P9DA 2P6DA 2DSIA 1PJQA 2EH4A 2P5FA 2E07A 2E17A 2OWVA 3KE9A 2DV4A 2E4RA 2YBQA 2PCKA 4MV5A 3ZGLA 2PCMA 3UTCA 4H4EA 3FFYA 1WNGA 2PCGA 2DEKA 4MUXA 3LMMA 2DSGA 2PB6A 3SZUA 4MUYA 2E8HA 3T0GA 2EKAA 2NPNA 1PJTA 2E8SA 4EB3A 3UV7A 2E15A 2OWFA 2HUQA 2DV5A 2HUTA 3UWMA 1VE2A 3KEFA 4H4CA 1VHVA 2EK2A 1CBFA 2P6KA 3SZLA 2EEQA 2EGBA 2EL3A 3T0FA 2EGLA 3DNFA 2E0NA 2E08A 3F7TA 2DSHA 2E0KA 2DXVA 3UV3A 3NUTA 3I4TA 2EL1A 2ELDA 3KEMA 3UTDA 3KELA 2PCAA 2EH2A 2QBUA 2PB4A 2EJKA 3SZOA 2P5CA 2EJJA 2E8RA 2EMRA 2P2XA 1PJSA 2E16A 2Z6RA 2HUVA 2OWKA 3ZGNA 2ENIA 2DXWA 3KE8A 2EGSA 3URKA 2EMUA 4E16A 1VA0A 2E7RA 2EH5A 1WDEA 2HUXA 1WYZA 2ELEA 2OWUA 5HW4A 3TIXB 1VCEA 2PCIA 2EHLA 2DV7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E8Q A;  2DV3 A;  2EK7 A;  2EK3 A;  2EL2 A;  2P6L A;  3NDC A;  3ND1 A;  3NEI A;  2EHC A;  2PB5 A;  2EL0 A;  3KWP A;  2BB3 A;  3HH1 A;  2E4N A;  2EK4 A;  3FQ6 A;  2HR8 A;  2PCH A;  1S4D A;  2ZVC A;  1V9A A;  2EN5 A;  2OWG A;  2ZVB A;  2ED3 A;  2ED5 A;  2P6I A;  2CBF A;  2YBO A;  2DXX A;  2EJZ A;  2P9D A;  2P6D A;  2DSI A;  1PJQ A;  2EH4 A;  2P5F A;  2E07 A;  2E17 A;  2OWV A;  2DV4 A;  2E4R A;  2YBQ A;  2PCK A;  2PCM A;  3FFY A;  1WNG A;  2PCG A;  2DEK A;  2DSG A;  2PB6 A;  2E8H A;  2EKA A;  2NPN A;  1PJT A;  2E8S A;  2E15 A;  2OWF A;  2HUQ A;  2DV5 A;  2HUT A;  1VE2 A;  1VHV A;  2EK2 A;  1CBF A;  2P6K A;  2EEQ A;  2EGB A;  2EL3 A;  2EGL A;  2E0N A;  2E08 A;  2DSH A;  2E0K A;  2DXV A;  3NUT A;  3I4T A;  2EL1 A;  2ELD A;  2PCA A;  2EH2 A;  2QBU A;  2PB4 A;  2EJK A;  2P5C A;  2EJJ A;  2E8R A;  2EMR A;  2P2X A;  1PJS A;  2E16 A;  2Z6R A;  2HUV A;  2OWK A;  2ENI A;  2DXW A;  2EGS A;  2EMU A;  4E16 A;  1VA0 A;  2E7R A;  2EH5 A;  1WDE A;  2HUX A;  1WYZ A;  2ELE A;  2OWU A;  5HW4 A;  1VCE A;  2PCI A;  2EHL A;  2DV7 A; 
#chains in the Genus database with same CATH topology
 2E8Q A;  2DV3 A;  2EK7 A;  4MV0 A;  2EK3 A;  2EL2 A;  2P6L A;  3NDC A;  3ND1 A;  3NEI A;  2EHC A;  2PB5 A;  2EL0 A;  3KWP A;  2BB3 A;  3HH1 A;  2E4N A;  2EK4 A;  3FQ6 A;  2HR8 A;  2PCH A;  3UV6 A;  1S4D A;  2ZVC A;  2KYY A;  1V9A A;  2EN5 A;  2OWG A;  2ZVB A;  2ED3 A;  2ED5 A;  4N7B A;  2P6I A;  4H4D A;  2CBF A;  2YBO A;  2DXX A;  2EJZ A;  2P9D A;  2P6D A;  2DSI A;  1PJQ A;  2EH4 A;  2P5F A;  2E07 A;  2E17 A;  2OWV A;  3KE9 A;  2DV4 A;  2E4R A;  2YBQ A;  2PCK A;  4MV5 A;  3ZGL A;  2PCM A;  3UTC A;  4H4E A;  3FFY A;  1WNG A;  2PCG A;  2DEK A;  4MUX A;  3LMM A;  2DSG A;  2PB6 A;  3SZU A;  4MUY A;  2E8H A;  3T0G A;  2EKA A;  2NPN A;  1PJT A;  2E8S A;  4EB3 A;  3UV7 A;  2E15 A;  2OWF A;  2HUQ A;  2DV5 A;  2HUT A;  3UWM A;  1VE2 A;  3KEF A;  4H4C A;  1VHV A;  2EK2 A;  1CBF A;  2P6K A;  3SZL A;  2EEQ A;  2EGB A;  2EL3 A;  3T0F A;  2EGL A;  3DNF A;  2E0N A;  2E08 A;  3F7T A;  2DSH A;  2E0K A;  2DXV A;  3UV3 A;  3NUT A;  3I4T A;  2EL1 A;  2ELD A;  3KEM A;  3UTD A;  3KEL A;  2PCA A;  2EH2 A;  2QBU A;  2PB4 A;  2EJK A;  3SZO A;  2P5C A;  2EJJ A;  2E8R A;  2EMR A;  2P2X A;  1PJS A;  2E16 A;  2Z6R A;  2HUV A;  2OWK A;  3ZGN A;  2ENI A;  2DXW A;  3KE8 A;  2EGS A;  3URK A;  2EMU A;  4E16 A;  1VA0 A;  2E7R A;  2EH5 A;  1WDE A;  2HUX A;  1WYZ A;  2ELE A;  2OWU A;  5HW4 A;  3TIX B;  1VCE A;  2PCI A;  2EHL A;  2DV7 A; 
#chains in the Genus database with same CATH homology
 2E8Q A;  2DV3 A;  2EK7 A;  4MV0 A;  2EK3 A;  2EL2 A;  2P6L A;  3NDC A;  3ND1 A;  3NEI A;  2EHC A;  2PB5 A;  2EL0 A;  3KWP A;  2BB3 A;  3HH1 A;  2E4N A;  2EK4 A;  3FQ6 A;  2HR8 A;  2PCH A;  3UV6 A;  1S4D A;  2ZVC A;  2KYY A;  1V9A A;  2EN5 A;  2OWG A;  2ZVB A;  2ED3 A;  2ED5 A;  4N7B A;  2P6I A;  4H4D A;  2CBF A;  2YBO A;  2DXX A;  2EJZ A;  2P9D A;  2P6D A;  2DSI A;  1PJQ A;  2EH4 A;  2P5F A;  2E07 A;  2E17 A;  2OWV A;  3KE9 A;  2DV4 A;  2E4R A;  2YBQ A;  2PCK A;  4MV5 A;  3ZGL A;  2PCM A;  3UTC A;  4H4E A;  3FFY A;  1WNG A;  2PCG A;  2DEK A;  4MUX A;  3LMM A;  2DSG A;  2PB6 A;  3SZU A;  4MUY A;  2E8H A;  3T0G A;  2EKA A;  2NPN A;  1PJT A;  2E8S A;  4EB3 A;  3UV7 A;  2E15 A;  2OWF A;  2HUQ A;  2DV5 A;  2HUT A;  3UWM A;  1VE2 A;  3KEF A;  4H4C A;  1VHV A;  2EK2 A;  1CBF A;  2P6K A;  3SZL A;  2EEQ A;  2EGB A;  2EL3 A;  3T0F A;  2EGL A;  3DNF A;  2E0N A;  2E08 A;  3F7T A;  2DSH A;  2E0K A;  2DXV A;  3UV3 A;  3NUT A;  3I4T A;  2EL1 A;  2ELD A;  3KEM A;  3UTD A;  3KEL A;  2PCA A;  2EH2 A;  2QBU A;  2PB4 A;  2EJK A;  3SZO A;  2P5C A;  2EJJ A;  2E8R A;  2EMR A;  2P2X A;  1PJS A;  2E16 A;  2Z6R A;  2HUV A;  2OWK A;  3ZGN A;  2ENI A;  2DXW A;  3KE8 A;  2EGS A;  3URK A;  2EMU A;  4E16 A;  1VA0 A;  2E7R A;  2EH5 A;  1WDE A;  2HUX A;  1WYZ A;  2ELE A;  2OWU A;  5HW4 A;  3TIX B;  1VCE A;  2PCI A;  2EHL A;  2DV7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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