The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
31
|
sequence length |
96
|
structure length |
96
|
Chain Sequence |
MRLTEEEVQALLEKADGWKLADERWIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISIDYKLITVKLSSWRAKGLTKLDFDLAKQYDEVYNQMK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of pterin-4-alpha-carbinolamine dehydratase (pterin carbinolamine dehydratase) from Geobacillus kaustophilus HTA426
rcsb |
| molecule keywords |
Pterin-4-alpha-carbinolamine dehydratase
|
| source organism |
Geobacillus kaustophilus
|
| molecule tags |
Lyase
|
| total genus |
31
|
| structure length |
96
|
| sequence length |
96
|
| ec nomenclature |
ec
4.2.1.96: 4a-hydroxytetrahydrobiopterin dehydratase. |
| pdb deposition date | 2007-02-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01329 | Pterin_4a | Pterin 4 alpha carbinolamine dehydratase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Gyrase A; domain 2 | Transcriptional coactivator/pterin dehydratase |
#chains in the Genus database with same CATH superfamily 1DCH A; 2V6U A; 1USO A; 2V6T A; 2V6S A; 3HXA A; 3JST A; 1RU0 A; 4C45 A; 4WIL A; 1DCO A; 1DCP A; 1USM A; 1F93 A; 2EBB A; 4LOW A; #chains in the Genus database with same CATH topology 1I50 C; 5IOS A; 4BY7 C; 4RMF A; 4A3D K; 2PHC B; 4ZH4 A; 1O2A A; 1ZQ1 C; 2CFA A; 5IP9 K; 3GSI A; 4GTC A; 5IYB C; 2E2H K; 2JA5 A; 1INN A; 4AYB L; 2ZFZ A; 4GTB A; 3CQZ K; 1HQM A; 4BLA A; 5C44 C; 5CJ9 A; 1K83 C; 1EQR A; 3A8K A; 4A3M C; 1WSR A; 2JA7 C; 3LAJ A; 2JA6 K; 4KDD A; 4GTL A; 3HOU K; 3GTQ A; 1J98 A; 2PA8 L; 4AH6 A; 1ISE A; 5EGE A; 4C3H K; 1VRQ C; 5M5X K; 2R93 A; 3GEH A; 1IBA A; 3K7A C; 3GEE A; 3S15 K; 2WAQ L; 1ZBS A; 4C3I K; 4ILD A; 2B63 C; 2E2I C; 3HOV C; 4A3I K; 1F7V A; 3GTG A; 3N0B A; 4QIW L; 2XCQ A; 3VA7 A; 2E2J K; 4OIR A; 4A93 K; 1TWF K; 1SMY A; 4J3N A; 5E68 A; 2NVX A; 1Y1W K; 1HI9 A; 4Y7N C; 3I4M K; 4Q5S A; 3AH5 A; 1WCM K; 4A3J C; 1UV7 A; 1TWA K; 3AQP A; 2NVY K; 4FM9 A; 4X6A K; 3A8J A; 4A3D C; 1O29 A; 3N0C A; 4GFQ A; 1IE0 A; 1Y1V K; 3GTP A; 1JQW A; 3GTJ A; 1O26 A; 1I50 K; 4XCH A; 4KN4 A; 1O25 A; 3GDZ A; 1JVI A; 2Y0S D; 5IYB K; 3S17 C; 4LK1 A; 4KMD A; 1I3Q C; 5C44 K; 1DCO A; 5M5Y K; 1USM A; 1K83 K; 2V6U A; 4A3M K; 1TWH A; 1O24 A; 2JA7 K; 1YX2 A; 1TWF A; 2P8T A; 1DCP A; 5TJ3 A; 3CAG A; 1SFO A; 3HOW C; 2BE5 A; 3OEP A; 3AD9 C; 1F7U A; 4LOW A; 2NVY A; 2FQO A; 3WOD A; 1BJT A; 4KB4 A; 1WOR A; 1WQG A; 3K7A K; 4G7O A; 2YU9 C; 3S16 C; 3LAP A; 4A3C C; 4KAT A; 3FKI A; 4C45 A; 3T02 A; 2B63 K; 2Y3P A; 2E2I K; 5IYC C; 3HOV K; 1YCL A; 4QJV A; 2CW0 A; 4KM9 A; 1WOO A; 1K83 A; 3HKZ D; 1WCM C; 2A6H A; 2EBB A; 1TWA C; 1IS1 A; 4Y7N K; 3GTK C; 3H3V L; 2D6F C; 3OPF A; 2R92 C; 2GSU A; 3H3V D; 4PAB A; 4Q4Z A; 4XSX A; 4A3B C; 2B63 A; 4WJ4 A; 3S17 K; 4BBS C; 1VLO A; 1I3Q K; 3GTM A; 1O27 A; 4A3K C; 4OIN A; 4Y52 C; 1VH2 A; 1WIH A; 4LJZ A; 3FOE A; 1R9T C; 1EI6 A; 3GTO C; 3GTL C; 3HOW K; 5IOR A; 2XCR B; 2FQT A; 4P5B A; 2RGR A; 3A8I A; 1XZP B; 3EQL A; 2R7Z C; 1EH1 A; 2YU9 K; 1YNJ A; 2E2H A; 3S16 K; 4GT9 A; 4A3C K; 3BP8 C; 3CQZ A; 4FZB A; 2NVQ K; 1XXC A; 3T00 A; 3LPX A; 5IYC K; 1J6V A; 4GTD A; 5C3E C; 4C2M K; 4G7H A; 4MEY A; 1XPP A; 4M1X A; 4KMA A; 4BXX C; 2V6T A; 1J6X A; 5C4J C; 3HOX K; 2JA6 A; 2JA5 C; 1TWC C; 2WB1 D; 4LK0 A; 3S1R K; 3GTK K; 3S1Q C; 2Y0S L; 1IW7 A; 4BY1 C; 4NOI A; 4KB2 A; 2R92 K; 1J6W A; 3AQO A; 2GSO A; 2P5M A; 3S0X A; 3GTQ C; 5TMC A; 5IOT A; 5CHP A; 1XXB A; 5D4D A; 1PJ7 A; 4BBR K; 4A3B K; 2A69 A; 3L4J A; 3S2D C; 1I6V A; 3S2H C; 4BBS K; 3HOY C; 1O2B A; 4LLG A; 1PJ6 A; 1Y1W A; 4A3K K; 1IL2 A; 5C4X C; 4Y52 K; 3IPJ A; 3GTG C; 1WCM A; 4A3E C; 4KN7 A; 3S1N K; 1TWA A; 4XLP A; 1R9T K; 5FLM C; 3GTO K; 3GTL K; 3M3Y C; 4A3L C; 1Y1V A; 3ORE A; 4OIP A; 1ZYR A; 3G4A A; 5M3M K; 1I50 A; 5IYD C; 2NVX C; 1XXA A; 4OIQ A; 5JVO A; 2GAH C; 2NVQ C; 4C3J C; 2R7Z K; 3HKZ L; 1RU0 A; 1EFW A; 4C2M C; 1YNN A; 3GTP C; 2NVT C; 3S1M C; 3HOX C; 5C3E K; 3RZO C; 2JA7 A; 2RH6 A; 4BXX K; 5C4J K; 1TWG C; 4PAA A; 2JA5 K; 1TWC K; 2PMZ D; 5TMF A; 3S1R C; 1DD5 A; 2ZUF A; 3RZD C; 3BP3 A; 4BLB A; 1WOS A; 3S1Q K; 4BY1 K; 4LQY A; 1TWH C; 3TTG A; 2O5J A; 2VUM C; 2A68 A; 4A3F C; 3V4G A; 1G51 A; 4KAS A; 4MQ9 A; 3T01 A; 3NUH A; 4BBR C; 3GTQ K; 2R7Z A; 2E2I A; 4LR2 A; 3I4N C; 3H0G C; 2GSN A; 1WQF A; 1USO A; 2R93 K; 4YFX A; 3S2D K; 2JH3 A; 3FKI C; 3BUE A; 3S2H K; 3HOY K; 2W7V A; 1L0W A; 3S1N C; 3QX3 A; 2ZUE A; 4OIO A; 1XZP A; 5C4X K; 1TWC A; 3DXJ A; 2V6S A; 3GTG K; 2CFA B; 4A3E K; 1B4B A; 4A3G C; 4WIL A; 4XSZ A; 3PO2 C; 4DDQ A; 1BGW A; 5FLM K; 4KMH A; 2JA8 C; 3PO3 K; 3JST A; 3M3Y K; 4A3L K; 3HOZ C; 3M4O C; 4G0U A; 4AYB D; 4G0W A; 5IYD K; 2NVX K; 1EK8 A; 4C3J K; 2WB1 L; 4P5A A; 3S14 K; 1I3Q A; 3GTP K; 3TFI A; 2NVT K; 3S1M K; 3GTJ K; 4MEX A; 1XZQ A; 4KAW X; 4KC6 A; 3RZO K; 2PA8 D; 4JK1 A; 4G7Z A; 5HL8 A; 5FJ8 K; 1VJE A; 4GTE A; 1XZQ B; 5M3F K; 3SZZ A; 1TWG K; 3RZD K; 3GIR A; 1WQH A; 2WAQ D; 2PPB A; 1V5V A; 3FHZ A; 3GTM C; 1I6H C; 1ZXO A; 1TWH K; 1X31 C; 2VUM K; 1VGX A; 5M5W K; 2YU9 A; 4A3F K; 5IP7 C; 4GTF A; 4QIW D; 4P9S A; 1SFO K; 1KQ4 A; 2R93 C; 1IQ0 A; 1F9N A; 3I4N K; 3H0G K; 4YG2 A; 5IP9 C; 4WJ3 M; 1B4A A; 3AD7 C; 2E2H C; 4BY7 K; 3Q3Q A; 3FOF A; 3FKI K; 4YFK A; 3CQZ C; 1O28 A; 1TWG A; 3GTK A; 2XCO A; 3PO3 C; 5L46 A; 1JOE A; 2O5I A; 4A3G K; 2R92 A; 4KM8 A; 3PO2 K; 2JA6 C; 1WOP A; 1ZVU A; 5EGH A; 4GTA A; 4KAR A; 2JA8 K; 3HOU C; 1O2F B; 3HOZ K; 2VUM A; 3HXA A; 3M4O K; 3TFH A; 1PJ5 A; 1F93 A; 4C3H C; 3S14 C; 2A6E A; 2PMZ L; 3N3Y A; 3GTJ C; 3S15 C; 3H0G A; 2KWA A; 3ADA C; 4C3I C; 1AB4 A; 3L4K A; 4BKW A; 1GE9 A; 4A3I C; 1DCH A; 3AD8 C; 2GAG C; 4G0V A; 3GEI A; 3G4C A; 1R9T A; 3GTO A; 3GTL A; 3MML B; 3SZY A; 5IOQ A; 2E2J C; 3GTM K; 4A93 C; 1TWF C; 4YFN A; 1I6H K; 1C0A A; 4O2D A; 3ERE D; 1Y1W C; 3I4M C; 1SFO C; 4QJV B; 1WSV A; 4XLN A; 5IP7 K; 2NVY C; 5JFE A; 4GZY A; 4X6A C; 1BDF A; 1BS2 A; 1Y1V C; 4KMU A; 3TFJ A; 4A3J K; #chains in the Genus database with same CATH homology 1DCH A; 2V6U A; 1USO A; 2V6T A; 2V6S A; 3HXA A; 3JST A; 1RU0 A; 4C45 A; 4WIL A; 1DCO A; 1DCP A; 1USM A; 1F93 A; 2EBB A; 4LOW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
