2ED5A

Mutant s147m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTMYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant S147M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ed5A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ed5A01
3FQ6A 2OWVA 2DXVA 2P5CA 1PJSA 2EL0A 2QBUA 2P6DA 2EH2A 2E15A 2Z6RA 2OWGA 2EJJA 2E0KA 2DV4A 2E07A 2YBOA 2BB3A 2E8RA 2PCAA 1S4DA 2E16A 2EJZA 2EMUA 2ZVCA 2E0NA 2CBFA 1WYZA 2EHCA 1PJTA 2P5FA 2EKAA 2PCKA 2DEKA 2OWKA 2P6KA 2EEQA 2DSGA 1WNGA 4E16A 1WDEA 1VCEA 2PCMA 2EH4A 5HW4A 1CBFA 2EHLA 1PJQA 2PCIA 2EGBA 3I4TA 2ELDA 2HUXA 2E7RA 2ENIA 2ELEA 2E4RA 2DXXA 2ED5A 2EJKA 2PB4A 2PCHA 2EH5A 2ED3A 2HR8A 2PB6A 2EGSA 3HH1A 3NDCA 2HUVA 2EK4A 2DSIA 2ZVBA 2EL3A 2DV5A 2P6IA 2OWFA 2HUTA 2EK3A 2PB5A 2DXWA 1VE2A 1VA0A 2DSHA 2EK2A 3NEIA 2E8HA 2E4NA 2E8SA 2E8QA 2E08A 2NPNA 2E17A 3FFYA 3KWPA 2EGLA 2HUQA 2P9DA 2P2XA 2PCGA 1V9AA 2EL1A 2P6LA 1VHVA 2EL2A 2OWUA 2DV7A 2YBQA 3ND1A 2DV3A 2EK7A 2EN5A 3NUTA 2EMRA
chains in the Genus database with same CATH superfamily
3FQ6A 2OWVA 2DXVA 4MV0A 2P5CA 1PJSA 4H4CA 2EL0A 2QBUA 2P6DA 2EH2A 2E15A 2Z6RA 2OWGA 2KYYA 2EJJA 2E0KA 2DV4A 2E07A 2YBOA 2BB3A 2E8RA 2PCAA 1S4DA 2E16A 2EJZA 2EMUA 2ZVCA 2E0NA 2CBFA 1WYZA 3UTCA 2EHCA 3LMMA 1PJTA 2P5FA 2EKAA 2PCKA 2DEKA 2OWKA 2P6KA 2EEQA 4N7BA 3URKA 2DSGA 1WNGA 4E16A 3SZLA 1WDEA 1VCEA 2PCMA 2EH4A 5HW4A 3UV3A 1CBFA 2EHLA 3SZUA 1PJQA 3SZOA 2PCIA 2EGBA 3I4TA 3UTDA 2ELDA 2HUXA 3KE8A 2E7RA 2ENIA 3UV7A 2ELEA 2E4RA 2DXXA 2ED5A 2EJKA 2PB4A 3KELA 2PCHA 2EH5A 3ZGNA 2ED3A 2HR8A 2PB6A 2EGSA 3HH1A 3NDCA 4H4EA 2HUVA 2EK4A 2DSIA 2ZVBA 2EL3A 2DV5A 3F7TA 4MUXA 2P6IA 2OWFA 4MUYA 4H4DA 2HUTA 2EK3A 2PB5A 2DXWA 1VE2A 3UWMA 3ZGLA 1VA0A 2DSHA 2EK2A 3NEIA 2E8HA 2E4NA 3UV6A 2E8SA 3T0GA 3KEFA 3T0FA 2E8QA 2E08A 2NPNA 3KE9A 3TIXB 2E17A 3FFYA 3KWPA 3DNFA 2EGLA 2HUQA 2P9DA 2P2XA 2PCGA 1V9AA 2EL1A 2P6LA 1VHVA 3KEMA 4MV5A 4EB3A 2EL2A 2OWUA 2DV7A 2YBQA 3ND1A 2DV3A 2EK7A 2EN5A 3NUTA 2EMRA
chains in the Genus database with same CATH topology
3FQ6A 2OWVA 2DXVA 4MV0A 2P5CA 1PJSA 4H4CA 2EL0A 2QBUA 2P6DA 2EH2A 2E15A 2Z6RA 2OWGA 2KYYA 2EJJA 2E0KA 2DV4A 2E07A 2YBOA 2BB3A 2E8RA 2PCAA 1S4DA 2E16A 2EJZA 2EMUA 2ZVCA 2E0NA 2CBFA 1WYZA 3UTCA 2EHCA 3LMMA 1PJTA 2P5FA 2EKAA 2PCKA 2DEKA 2OWKA 2P6KA 2EEQA 4N7BA 3URKA 2DSGA 1WNGA 4E16A 3SZLA 1WDEA 1VCEA 2PCMA 2EH4A 5HW4A 3UV3A 1CBFA 2EHLA 3SZUA 1PJQA 3SZOA 2PCIA 2EGBA 3I4TA 3UTDA 2ELDA 2HUXA 3KE8A 2E7RA 2ENIA 3UV7A 2ELEA 2E4RA 2DXXA 2ED5A 2EJKA 2PB4A 3KELA 2PCHA 2EH5A 3ZGNA 2ED3A 2HR8A 2PB6A 2EGSA 3HH1A 3NDCA 4H4EA 2HUVA 2EK4A 2DSIA 2ZVBA 2EL3A 2DV5A 3F7TA 4MUXA 2P6IA 2OWFA 4MUYA 4H4DA 2HUTA 2EK3A 2PB5A 2DXWA 1VE2A 3UWMA 3ZGLA 1VA0A 2DSHA 2EK2A 3NEIA 2E8HA 2E4NA 3UV6A 2E8SA 3T0GA 3KEFA 3T0FA 2E8QA 2E08A 2NPNA 3KE9A 3TIXB 2E17A 3FFYA 3KWPA 3DNFA 2EGLA 2HUQA 2P9DA 2P2XA 2PCGA 1V9AA 2EL1A 2P6LA 1VHVA 3KEMA 4MV5A 4EB3A 2EL2A 2OWUA 2DV7A 2YBQA 3ND1A 2DV3A 2EK7A 2EN5A 3NUTA 2EMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FQ6 A;  2OWV A;  2DXV A;  2P5C A;  1PJS A;  2EL0 A;  2QBU A;  2P6D A;  2EH2 A;  2E15 A;  2Z6R A;  2OWG A;  2EJJ A;  2E0K A;  2DV4 A;  2E07 A;  2YBO A;  2BB3 A;  2E8R A;  2PCA A;  1S4D A;  2E16 A;  2EJZ A;  2EMU A;  2ZVC A;  2E0N A;  2CBF A;  1WYZ A;  2EHC A;  1PJT A;  2P5F A;  2EKA A;  2PCK A;  2DEK A;  2OWK A;  2P6K A;  2EEQ A;  2DSG A;  1WNG A;  4E16 A;  1WDE A;  1VCE A;  2PCM A;  2EH4 A;  5HW4 A;  1CBF A;  2EHL A;  1PJQ A;  2PCI A;  2EGB A;  3I4T A;  2ELD A;  2HUX A;  2E7R A;  2ENI A;  2ELE A;  2E4R A;  2DXX A;  2ED5 A;  2EJK A;  2PB4 A;  2PCH A;  2EH5 A;  2ED3 A;  2HR8 A;  2PB6 A;  2EGS A;  3HH1 A;  3NDC A;  2HUV A;  2EK4 A;  2DSI A;  2ZVB A;  2EL3 A;  2DV5 A;  2P6I A;  2OWF A;  2HUT A;  2EK3 A;  2PB5 A;  2DXW A;  1VE2 A;  1VA0 A;  2DSH A;  2EK2 A;  3NEI A;  2E8H A;  2E4N A;  2E8S A;  2E8Q A;  2E08 A;  2NPN A;  2E17 A;  3FFY A;  3KWP A;  2EGL A;  2HUQ A;  2P9D A;  2P2X A;  2PCG A;  1V9A A;  2EL1 A;  2P6L A;  1VHV A;  2EL2 A;  2OWU A;  2DV7 A;  2YBQ A;  3ND1 A;  2DV3 A;  2EK7 A;  2EN5 A;  3NUT A;  2EMR A; 
#chains in the Genus database with same CATH topology
 3FQ6 A;  2OWV A;  2DXV A;  4MV0 A;  2P5C A;  1PJS A;  4H4C A;  2EL0 A;  2QBU A;  2P6D A;  2EH2 A;  2E15 A;  2Z6R A;  2OWG A;  2KYY A;  2EJJ A;  2E0K A;  2DV4 A;  2E07 A;  2YBO A;  2BB3 A;  2E8R A;  2PCA A;  1S4D A;  2E16 A;  2EJZ A;  2EMU A;  2ZVC A;  2E0N A;  2CBF A;  1WYZ A;  3UTC A;  2EHC A;  3LMM A;  1PJT A;  2P5F A;  2EKA A;  2PCK A;  2DEK A;  2OWK A;  2P6K A;  2EEQ A;  4N7B A;  3URK A;  2DSG A;  1WNG A;  4E16 A;  3SZL A;  1WDE A;  1VCE A;  2PCM A;  2EH4 A;  5HW4 A;  3UV3 A;  1CBF A;  2EHL A;  3SZU A;  1PJQ A;  3SZO A;  2PCI A;  2EGB A;  3I4T A;  3UTD A;  2ELD A;  2HUX A;  3KE8 A;  2E7R A;  2ENI A;  3UV7 A;  2ELE A;  2E4R A;  2DXX A;  2ED5 A;  2EJK A;  2PB4 A;  3KEL A;  2PCH A;  2EH5 A;  3ZGN A;  2ED3 A;  2HR8 A;  2PB6 A;  2EGS A;  3HH1 A;  3NDC A;  4H4E A;  2HUV A;  2EK4 A;  2DSI A;  2ZVB A;  2EL3 A;  2DV5 A;  3F7T A;  4MUX A;  2P6I A;  2OWF A;  4MUY A;  4H4D A;  2HUT A;  2EK3 A;  2PB5 A;  2DXW A;  1VE2 A;  3UWM A;  3ZGL A;  1VA0 A;  2DSH A;  2EK2 A;  3NEI A;  2E8H A;  2E4N A;  3UV6 A;  2E8S A;  3T0G A;  3KEF A;  3T0F A;  2E8Q A;  2E08 A;  2NPN A;  3KE9 A;  3TIX B;  2E17 A;  3FFY A;  3KWP A;  3DNF A;  2EGL A;  2HUQ A;  2P9D A;  2P2X A;  2PCG A;  1V9A A;  2EL1 A;  2P6L A;  1VHV A;  3KEM A;  4MV5 A;  4EB3 A;  2EL2 A;  2OWU A;  2DV7 A;  2YBQ A;  3ND1 A;  2DV3 A;  2EK7 A;  2EN5 A;  3NUT A;  2EMR A; 
#chains in the Genus database with same CATH homology
 3FQ6 A;  2OWV A;  2DXV A;  4MV0 A;  2P5C A;  1PJS A;  4H4C A;  2EL0 A;  2QBU A;  2P6D A;  2EH2 A;  2E15 A;  2Z6R A;  2OWG A;  2KYY A;  2EJJ A;  2E0K A;  2DV4 A;  2E07 A;  2YBO A;  2BB3 A;  2E8R A;  2PCA A;  1S4D A;  2E16 A;  2EJZ A;  2EMU A;  2ZVC A;  2E0N A;  2CBF A;  1WYZ A;  3UTC A;  2EHC A;  3LMM A;  1PJT A;  2P5F A;  2EKA A;  2PCK A;  2DEK A;  2OWK A;  2P6K A;  2EEQ A;  4N7B A;  3URK A;  2DSG A;  1WNG A;  4E16 A;  3SZL A;  1WDE A;  1VCE A;  2PCM A;  2EH4 A;  5HW4 A;  3UV3 A;  1CBF A;  2EHL A;  3SZU A;  1PJQ A;  3SZO A;  2PCI A;  2EGB A;  3I4T A;  3UTD A;  2ELD A;  2HUX A;  3KE8 A;  2E7R A;  2ENI A;  3UV7 A;  2ELE A;  2E4R A;  2DXX A;  2ED5 A;  2EJK A;  2PB4 A;  3KEL A;  2PCH A;  2EH5 A;  3ZGN A;  2ED3 A;  2HR8 A;  2PB6 A;  2EGS A;  3HH1 A;  3NDC A;  4H4E A;  2HUV A;  2EK4 A;  2DSI A;  2ZVB A;  2EL3 A;  2DV5 A;  3F7T A;  4MUX A;  2P6I A;  2OWF A;  4MUY A;  4H4D A;  2HUT A;  2EK3 A;  2PB5 A;  2DXW A;  1VE2 A;  3UWM A;  3ZGL A;  1VA0 A;  2DSH A;  2EK2 A;  3NEI A;  2E8H A;  2E4N A;  3UV6 A;  2E8S A;  3T0G A;  3KEF A;  3T0F A;  2E8Q A;  2E08 A;  2NPN A;  3KE9 A;  3TIX B;  2E17 A;  3FFY A;  3KWP A;  3DNF A;  2EGL A;  2HUQ A;  2P9D A;  2P2X A;  2PCG A;  1V9A A;  2EL1 A;  2P6L A;  1VHV A;  3KEM A;  4MV5 A;  4EB3 A;  2EL2 A;  2OWU A;  2DV7 A;  2YBQ A;  3ND1 A;  2DV3 A;  2EK7 A;  2EN5 A;  3NUT A;  2EMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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