2ED5A

Mutant s147m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTMYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Mutant S147M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ed5A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ed5A01
2PB5A 2E17A 2OWFA 2EMUA 3KWPA 2Z6RA 2ELEA 2EN5A 2OWUA 5HW4A 2EHCA 2CBFA 2NPNA 4E16A 3NUTA 2ZVCA 2P6IA 2EK7A 2E16A 2E8SA 2E07A 1VCEA 2EJZA 1S4DA 2BB3A 1WNGA 2E8QA 2YBQA 2ED5A 2EEQA 2E7RA 2DSGA 2E08A 1V9AA 3FQ6A 1WDEA 2PCMA 2ZVBA 2E0NA 2EL2A 2DXVA 2P5CA 2E0KA 2PCHA 3ND1A 1PJSA 2EJKA 2EH2A 2EJJA 2DV5A 2DV7A 2DSIA 2YBOA 3NDCA 2EK4A 2EMRA 2ED3A 1WYZA 2DXWA 2E8RA 2E8HA 2E4NA 2HR8A 2EH4A 2OWKA 2EH5A 1VE2A 3I4TA 2HUXA 2EGBA 2EHLA 2ELDA 2EL1A 2PCIA 1PJQA 2EGSA 2P2XA 1VA0A 2PB6A 2OWVA 2PCKA 3NEIA 3FFYA 2DXXA 1PJTA 2P9DA 2PCAA 2PB4A 3HH1A 2QBUA 2HUTA 2P6LA 2HUVA 2EKAA 1VHVA 2OWGA 2HUQA 2P6DA 2DV4A 2DV3A 2EL0A 2E15A 2EK2A 2EK3A 2DSHA 2P6KA 2PCGA 2EGLA 2ENIA 2P5FA 2DEKA 2EL3A 2E4RA 1CBFA
chains in the Genus database with same CATH superfamily
2PB5A 2E17A 2OWFA 2EMUA 3KWPA 3LMMA 2Z6RA 2ELEA 2EN5A 2OWUA 5HW4A 4H4DA 2EHCA 2CBFA 2NPNA 4E16A 3NUTA 2ZVCA 2P6IA 2EK7A 2E16A 2E8SA 2E07A 1VCEA 2EJZA 1S4DA 2BB3A 1WNGA 2E8QA 2YBQA 2ED5A 2EEQA 2E7RA 2DSGA 2E08A 3F7TA 1V9AA 3FQ6A 1WDEA 2KYYA 2PCMA 4MUYA 2ZVBA 2E0NA 2EL2A 2DXVA 2P5CA 4H4CA 2E0KA 2PCHA 3DNFA 3ND1A 3UTDA 1PJSA 2EJKA 2EH2A 2EJJA 3ZGLA 4EB3A 2DV5A 3SZUA 2DV7A 2DSIA 2YBOA 4N7BA 3ZGNA 3NDCA 2EK4A 2EMRA 3TIXB 2ED3A 4H4EA 1WYZA 3SZLA 3KEFA 3UWMA 2DXWA 2E8RA 4MV0A 2E8HA 2E4NA 2HR8A 2EH4A 2OWKA 2EH5A 1VE2A 3KE8A 3I4TA 2HUXA 4MUXA 2EGBA 2EHLA 2ELDA 2EL1A 2PCIA 3UTCA 1PJQA 2EGSA 2P2XA 1VA0A 3UV7A 2PB6A 3SZOA 3KE9A 2OWVA 2PCKA 3NEIA 3FFYA 2DXXA 1PJTA 2P9DA 2PCAA 2PB4A 3URKA 3HH1A 2QBUA 2HUTA 2P6LA 3T0GA 2HUVA 2EKAA 1VHVA 2OWGA 3UV3A 3UV6A 2HUQA 2P6DA 2DV4A 2DV3A 2EL0A 2E15A 2EK2A 2EK3A 2DSHA 2P6KA 3T0FA 2PCGA 2EGLA 2ENIA 2P5FA 3KEMA 3KELA 2DEKA 2EL3A 2E4RA 4MV5A 1CBFA
chains in the Genus database with same CATH topology
2PB5A 2E17A 2OWFA 2EMUA 3KWPA 3LMMA 2Z6RA 2ELEA 2EN5A 2OWUA 5HW4A 4H4DA 2EHCA 2CBFA 2NPNA 4E16A 3NUTA 2ZVCA 2P6IA 2EK7A 2E16A 2E8SA 2E07A 1VCEA 2EJZA 1S4DA 2BB3A 1WNGA 2E8QA 2YBQA 2ED5A 2EEQA 2E7RA 2DSGA 2E08A 3F7TA 1V9AA 3FQ6A 1WDEA 2KYYA 2PCMA 4MUYA 2ZVBA 2E0NA 2EL2A 2DXVA 2P5CA 4H4CA 2E0KA 2PCHA 3DNFA 3ND1A 3UTDA 1PJSA 2EJKA 2EH2A 2EJJA 3ZGLA 4EB3A 2DV5A 3SZUA 2DV7A 2DSIA 2YBOA 4N7BA 3ZGNA 3NDCA 2EK4A 2EMRA 3TIXB 2ED3A 4H4EA 1WYZA 3SZLA 3KEFA 3UWMA 2DXWA 2E8RA 4MV0A 2E8HA 2E4NA 2HR8A 2EH4A 2OWKA 2EH5A 1VE2A 3KE8A 3I4TA 2HUXA 4MUXA 2EGBA 2EHLA 2ELDA 2EL1A 2PCIA 3UTCA 1PJQA 2EGSA 2P2XA 1VA0A 3UV7A 2PB6A 3SZOA 3KE9A 2OWVA 2PCKA 3NEIA 3FFYA 2DXXA 1PJTA 2P9DA 2PCAA 2PB4A 3URKA 3HH1A 2QBUA 2HUTA 2P6LA 3T0GA 2HUVA 2EKAA 1VHVA 2OWGA 3UV3A 3UV6A 2HUQA 2P6DA 2DV4A 2DV3A 2EL0A 2E15A 2EK2A 2EK3A 2DSHA 2P6KA 3T0FA 2PCGA 2EGLA 2ENIA 2P5FA 3KEMA 3KELA 2DEKA 2EL3A 2E4RA 4MV5A 1CBFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PB5 A;  2E17 A;  2OWF A;  2EMU A;  3KWP A;  2Z6R A;  2ELE A;  2EN5 A;  2OWU A;  5HW4 A;  2EHC A;  2CBF A;  2NPN A;  4E16 A;  3NUT A;  2ZVC A;  2P6I A;  2EK7 A;  2E16 A;  2E8S A;  2E07 A;  1VCE A;  2EJZ A;  1S4D A;  2BB3 A;  1WNG A;  2E8Q A;  2YBQ A;  2ED5 A;  2EEQ A;  2E7R A;  2DSG A;  2E08 A;  1V9A A;  3FQ6 A;  1WDE A;  2PCM A;  2ZVB A;  2E0N A;  2EL2 A;  2DXV A;  2P5C A;  2E0K A;  2PCH A;  3ND1 A;  1PJS A;  2EJK A;  2EH2 A;  2EJJ A;  2DV5 A;  2DV7 A;  2DSI A;  2YBO A;  3NDC A;  2EK4 A;  2EMR A;  2ED3 A;  1WYZ A;  2DXW A;  2E8R A;  2E8H A;  2E4N A;  2HR8 A;  2EH4 A;  2OWK A;  2EH5 A;  1VE2 A;  3I4T A;  2HUX A;  2EGB A;  2EHL A;  2ELD A;  2EL1 A;  2PCI A;  1PJQ A;  2EGS A;  2P2X A;  1VA0 A;  2PB6 A;  2OWV A;  2PCK A;  3NEI A;  3FFY A;  2DXX A;  1PJT A;  2P9D A;  2PCA A;  2PB4 A;  3HH1 A;  2QBU A;  2HUT A;  2P6L A;  2HUV A;  2EKA A;  1VHV A;  2OWG A;  2HUQ A;  2P6D A;  2DV4 A;  2DV3 A;  2EL0 A;  2E15 A;  2EK2 A;  2EK3 A;  2DSH A;  2P6K A;  2PCG A;  2EGL A;  2ENI A;  2P5F A;  2DEK A;  2EL3 A;  2E4R A;  1CBF A; 
#chains in the Genus database with same CATH topology
 2PB5 A;  2E17 A;  2OWF A;  2EMU A;  3KWP A;  3LMM A;  2Z6R A;  2ELE A;  2EN5 A;  2OWU A;  5HW4 A;  4H4D A;  2EHC A;  2CBF A;  2NPN A;  4E16 A;  3NUT A;  2ZVC A;  2P6I A;  2EK7 A;  2E16 A;  2E8S A;  2E07 A;  1VCE A;  2EJZ A;  1S4D A;  2BB3 A;  1WNG A;  2E8Q A;  2YBQ A;  2ED5 A;  2EEQ A;  2E7R A;  2DSG A;  2E08 A;  3F7T A;  1V9A A;  3FQ6 A;  1WDE A;  2KYY A;  2PCM A;  4MUY A;  2ZVB A;  2E0N A;  2EL2 A;  2DXV A;  2P5C A;  4H4C A;  2E0K A;  2PCH A;  3DNF A;  3ND1 A;  3UTD A;  1PJS A;  2EJK A;  2EH2 A;  2EJJ A;  3ZGL A;  4EB3 A;  2DV5 A;  3SZU A;  2DV7 A;  2DSI A;  2YBO A;  4N7B A;  3ZGN A;  3NDC A;  2EK4 A;  2EMR A;  3TIX B;  2ED3 A;  4H4E A;  1WYZ A;  3SZL A;  3KEF A;  3UWM A;  2DXW A;  2E8R A;  4MV0 A;  2E8H A;  2E4N A;  2HR8 A;  2EH4 A;  2OWK A;  2EH5 A;  1VE2 A;  3KE8 A;  3I4T A;  2HUX A;  4MUX A;  2EGB A;  2EHL A;  2ELD A;  2EL1 A;  2PCI A;  3UTC A;  1PJQ A;  2EGS A;  2P2X A;  1VA0 A;  3UV7 A;  2PB6 A;  3SZO A;  3KE9 A;  2OWV A;  2PCK A;  3NEI A;  3FFY A;  2DXX A;  1PJT A;  2P9D A;  2PCA A;  2PB4 A;  3URK A;  3HH1 A;  2QBU A;  2HUT A;  2P6L A;  3T0G A;  2HUV A;  2EKA A;  1VHV A;  2OWG A;  3UV3 A;  3UV6 A;  2HUQ A;  2P6D A;  2DV4 A;  2DV3 A;  2EL0 A;  2E15 A;  2EK2 A;  2EK3 A;  2DSH A;  2P6K A;  3T0F A;  2PCG A;  2EGL A;  2ENI A;  2P5F A;  3KEM A;  3KEL A;  2DEK A;  2EL3 A;  2E4R A;  4MV5 A;  1CBF A; 
#chains in the Genus database with same CATH homology
 2PB5 A;  2E17 A;  2OWF A;  2EMU A;  3KWP A;  3LMM A;  2Z6R A;  2ELE A;  2EN5 A;  2OWU A;  5HW4 A;  4H4D A;  2EHC A;  2CBF A;  2NPN A;  4E16 A;  3NUT A;  2ZVC A;  2P6I A;  2EK7 A;  2E16 A;  2E8S A;  2E07 A;  1VCE A;  2EJZ A;  1S4D A;  2BB3 A;  1WNG A;  2E8Q A;  2YBQ A;  2ED5 A;  2EEQ A;  2E7R A;  2DSG A;  2E08 A;  3F7T A;  1V9A A;  3FQ6 A;  1WDE A;  2KYY A;  2PCM A;  4MUY A;  2ZVB A;  2E0N A;  2EL2 A;  2DXV A;  2P5C A;  4H4C A;  2E0K A;  2PCH A;  3DNF A;  3ND1 A;  3UTD A;  1PJS A;  2EJK A;  2EH2 A;  2EJJ A;  3ZGL A;  4EB3 A;  2DV5 A;  3SZU A;  2DV7 A;  2DSI A;  2YBO A;  4N7B A;  3ZGN A;  3NDC A;  2EK4 A;  2EMR A;  3TIX B;  2ED3 A;  4H4E A;  1WYZ A;  3SZL A;  3KEF A;  3UWM A;  2DXW A;  2E8R A;  4MV0 A;  2E8H A;  2E4N A;  2HR8 A;  2EH4 A;  2OWK A;  2EH5 A;  1VE2 A;  3KE8 A;  3I4T A;  2HUX A;  4MUX A;  2EGB A;  2EHL A;  2ELD A;  2EL1 A;  2PCI A;  3UTC A;  1PJQ A;  2EGS A;  2P2X A;  1VA0 A;  3UV7 A;  2PB6 A;  3SZO A;  3KE9 A;  2OWV A;  2PCK A;  3NEI A;  3FFY A;  2DXX A;  1PJT A;  2P9D A;  2PCA A;  2PB4 A;  3URK A;  3HH1 A;  2QBU A;  2HUT A;  2P6L A;  3T0G A;  2HUV A;  2EKA A;  1VHV A;  2OWG A;  3UV3 A;  3UV6 A;  2HUQ A;  2P6D A;  2DV4 A;  2DV3 A;  2EL0 A;  2E15 A;  2EK2 A;  2EK3 A;  2DSH A;  2P6K A;  3T0F A;  2PCG A;  2EGL A;  2ENI A;  2P5F A;  3KEM A;  3KEL A;  2DEK A;  2EL3 A;  2E4R A;  4MV5 A;  1CBF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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