2ED5A

Mutant s147m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTMYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant S147M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ed5A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ed5A01
3ND1A 2DXWA 2E8RA 2EMUA 2EMRA 2E15A 2ZVCA 2E0NA 2PCMA 2ED5A 2E8SA 1PJTA 2E17A 2EGSA 2EL2A 2P5FA 2YBOA 2PCGA 2DSGA 1CBFA 4E16A 3HH1A 2EHCA 2E7RA 1WDEA 2EGLA 2BB3A 2HUQA 2PCAA 2P2XA 1WNGA 2OWKA 1VHVA 2PCKA 2ELEA 2EGBA 2CBFA 1VE2A 2EH2A 2QBUA 2P5CA 3FQ6A 1PJSA 2HUTA 2P9DA 3FFYA 2E4RA 5HW4A 2EKAA 2DSIA 2DEKA 2EJJA 1WYZA 2EL3A 2P6IA 2P6KA 3KWPA 2EJZA 3I4TA 2NPNA 2P6DA 2DSHA 2DV4A 2E08A 2E07A 2HUXA 2HR8A 2PB4A 2PCIA 2OWUA 3NEIA 2EJKA 2DXVA 2EH5A 2EL1A 2OWGA 2ENIA 1V9AA 2EK3A 2PCHA 2YBQA 2PB6A 2ZVBA 1PJQA 2EL0A 2E8HA 2EK4A 2DV5A 2OWVA 2EK7A 2EH4A 2DV3A 2E8QA 1VA0A 3NUTA 2OWFA 2DV7A 2PB5A 2E16A 2E4NA 2EEQA 2HUVA 3NDCA 2EK2A 2DXXA 2EHLA 1VCEA 2ED3A 2Z6RA 2EN5A 2P6LA 1S4DA 2ELDA 2E0KA
chains in the Genus database with same CATH superfamily
3ND1A 2DXWA 2E8RA 2EMUA 3SZOA 3T0GA 2EMRA 2E15A 2ZVCA 3F7TA 2E0NA 2PCMA 2ED5A 2E8SA 1PJTA 2E17A 2EGSA 2EL2A 2P5FA 3TIXB 2YBOA 2PCGA 3UV6A 2DSGA 1CBFA 3LMMA 4E16A 3HH1A 3URKA 2EHCA 2E7RA 1WDEA 2EGLA 2BB3A 2HUQA 4MUXA 3KE8A 2PCAA 2P2XA 1WNGA 2OWKA 1VHVA 4MV5A 2PCKA 2ELEA 2EGBA 4H4CA 2CBFA 4H4EA 1VE2A 2KYYA 2EH2A 2QBUA 2P5CA 3FQ6A 3KEFA 1PJSA 2HUTA 2P9DA 4MV0A 3KELA 3ZGNA 3FFYA 2E4RA 3KE9A 3UV7A 5HW4A 3KEMA 2EKAA 2DSIA 2DEKA 2EJJA 1WYZA 4EB3A 2EL3A 2P6IA 2P6KA 3DNFA 3KWPA 2EJZA 3UV3A 3I4TA 3UTDA 2NPNA 2P6DA 2DSHA 2DV4A 2E08A 2E07A 2HUXA 2HR8A 2PB4A 2PCIA 2OWUA 4H4DA 3NEIA 2EJKA 2DXVA 2EH5A 2EL1A 2OWGA 2ENIA 1V9AA 2EK3A 2PCHA 2YBQA 2PB6A 2ZVBA 1PJQA 2EL0A 2E8HA 2EK4A 2DV5A 3ZGLA 2OWVA 2EK7A 2EH4A 3SZUA 2DV3A 2E8QA 1VA0A 3NUTA 2OWFA 2DV7A 2PB5A 2E16A 4N7BA 2E4NA 2EEQA 3UTCA 2HUVA 3NDCA 4MUYA 2EK2A 2DXXA 2EHLA 1VCEA 2ED3A 3SZLA 3T0FA 2Z6RA 3UWMA 2EN5A 2P6LA 1S4DA 2ELDA 2E0KA
chains in the Genus database with same CATH topology
3ND1A 2DXWA 2E8RA 2EMUA 3SZOA 3T0GA 2EMRA 2E15A 2ZVCA 3F7TA 2E0NA 2PCMA 2ED5A 2E8SA 1PJTA 2E17A 2EGSA 2EL2A 2P5FA 3TIXB 2YBOA 2PCGA 3UV6A 2DSGA 1CBFA 3LMMA 4E16A 3HH1A 3URKA 2EHCA 2E7RA 1WDEA 2EGLA 2BB3A 2HUQA 4MUXA 3KE8A 2PCAA 2P2XA 1WNGA 2OWKA 1VHVA 4MV5A 2PCKA 2ELEA 2EGBA 4H4CA 2CBFA 4H4EA 1VE2A 2KYYA 2EH2A 2QBUA 2P5CA 3FQ6A 3KEFA 1PJSA 2HUTA 2P9DA 4MV0A 3KELA 3ZGNA 3FFYA 2E4RA 3KE9A 3UV7A 5HW4A 3KEMA 2EKAA 2DSIA 2DEKA 2EJJA 1WYZA 4EB3A 2EL3A 2P6IA 2P6KA 3DNFA 3KWPA 2EJZA 3UV3A 3I4TA 3UTDA 2NPNA 2P6DA 2DSHA 2DV4A 2E08A 2E07A 2HUXA 2HR8A 2PB4A 2PCIA 2OWUA 4H4DA 3NEIA 2EJKA 2DXVA 2EH5A 2EL1A 2OWGA 2ENIA 1V9AA 2EK3A 2PCHA 2YBQA 2PB6A 2ZVBA 1PJQA 2EL0A 2E8HA 2EK4A 2DV5A 3ZGLA 2OWVA 2EK7A 2EH4A 3SZUA 2DV3A 2E8QA 1VA0A 3NUTA 2OWFA 2DV7A 2PB5A 2E16A 4N7BA 2E4NA 2EEQA 3UTCA 2HUVA 3NDCA 4MUYA 2EK2A 2DXXA 2EHLA 1VCEA 2ED3A 3SZLA 3T0FA 2Z6RA 3UWMA 2EN5A 2P6LA 1S4DA 2ELDA 2E0KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ND1 A;  2DXW A;  2E8R A;  2EMU A;  2EMR A;  2E15 A;  2ZVC A;  2E0N A;  2PCM A;  2ED5 A;  2E8S A;  1PJT A;  2E17 A;  2EGS A;  2EL2 A;  2P5F A;  2YBO A;  2PCG A;  2DSG A;  1CBF A;  4E16 A;  3HH1 A;  2EHC A;  2E7R A;  1WDE A;  2EGL A;  2BB3 A;  2HUQ A;  2PCA A;  2P2X A;  1WNG A;  2OWK A;  1VHV A;  2PCK A;  2ELE A;  2EGB A;  2CBF A;  1VE2 A;  2EH2 A;  2QBU A;  2P5C A;  3FQ6 A;  1PJS A;  2HUT A;  2P9D A;  3FFY A;  2E4R A;  5HW4 A;  2EKA A;  2DSI A;  2DEK A;  2EJJ A;  1WYZ A;  2EL3 A;  2P6I A;  2P6K A;  3KWP A;  2EJZ A;  3I4T A;  2NPN A;  2P6D A;  2DSH A;  2DV4 A;  2E08 A;  2E07 A;  2HUX A;  2HR8 A;  2PB4 A;  2PCI A;  2OWU A;  3NEI A;  2EJK A;  2DXV A;  2EH5 A;  2EL1 A;  2OWG A;  2ENI A;  1V9A A;  2EK3 A;  2PCH A;  2YBQ A;  2PB6 A;  2ZVB A;  1PJQ A;  2EL0 A;  2E8H A;  2EK4 A;  2DV5 A;  2OWV A;  2EK7 A;  2EH4 A;  2DV3 A;  2E8Q A;  1VA0 A;  3NUT A;  2OWF A;  2DV7 A;  2PB5 A;  2E16 A;  2E4N A;  2EEQ A;  2HUV A;  3NDC A;  2EK2 A;  2DXX A;  2EHL A;  1VCE A;  2ED3 A;  2Z6R A;  2EN5 A;  2P6L A;  1S4D A;  2ELD A;  2E0K A; 
#chains in the Genus database with same CATH topology
 3ND1 A;  2DXW A;  2E8R A;  2EMU A;  3SZO A;  3T0G A;  2EMR A;  2E15 A;  2ZVC A;  3F7T A;  2E0N A;  2PCM A;  2ED5 A;  2E8S A;  1PJT A;  2E17 A;  2EGS A;  2EL2 A;  2P5F A;  3TIX B;  2YBO A;  2PCG A;  3UV6 A;  2DSG A;  1CBF A;  3LMM A;  4E16 A;  3HH1 A;  3URK A;  2EHC A;  2E7R A;  1WDE A;  2EGL A;  2BB3 A;  2HUQ A;  4MUX A;  3KE8 A;  2PCA A;  2P2X A;  1WNG A;  2OWK A;  1VHV A;  4MV5 A;  2PCK A;  2ELE A;  2EGB A;  4H4C A;  2CBF A;  4H4E A;  1VE2 A;  2KYY A;  2EH2 A;  2QBU A;  2P5C A;  3FQ6 A;  3KEF A;  1PJS A;  2HUT A;  2P9D A;  4MV0 A;  3KEL A;  3ZGN A;  3FFY A;  2E4R A;  3KE9 A;  3UV7 A;  5HW4 A;  3KEM A;  2EKA A;  2DSI A;  2DEK A;  2EJJ A;  1WYZ A;  4EB3 A;  2EL3 A;  2P6I A;  2P6K A;  3DNF A;  3KWP A;  2EJZ A;  3UV3 A;  3I4T A;  3UTD A;  2NPN A;  2P6D A;  2DSH A;  2DV4 A;  2E08 A;  2E07 A;  2HUX A;  2HR8 A;  2PB4 A;  2PCI A;  2OWU A;  4H4D A;  3NEI A;  2EJK A;  2DXV A;  2EH5 A;  2EL1 A;  2OWG A;  2ENI A;  1V9A A;  2EK3 A;  2PCH A;  2YBQ A;  2PB6 A;  2ZVB A;  1PJQ A;  2EL0 A;  2E8H A;  2EK4 A;  2DV5 A;  3ZGL A;  2OWV A;  2EK7 A;  2EH4 A;  3SZU A;  2DV3 A;  2E8Q A;  1VA0 A;  3NUT A;  2OWF A;  2DV7 A;  2PB5 A;  2E16 A;  4N7B A;  2E4N A;  2EEQ A;  3UTC A;  2HUV A;  3NDC A;  4MUY A;  2EK2 A;  2DXX A;  2EHL A;  1VCE A;  2ED3 A;  3SZL A;  3T0F A;  2Z6R A;  3UWM A;  2EN5 A;  2P6L A;  1S4D A;  2ELD A;  2E0K A; 
#chains in the Genus database with same CATH homology
 3ND1 A;  2DXW A;  2E8R A;  2EMU A;  3SZO A;  3T0G A;  2EMR A;  2E15 A;  2ZVC A;  3F7T A;  2E0N A;  2PCM A;  2ED5 A;  2E8S A;  1PJT A;  2E17 A;  2EGS A;  2EL2 A;  2P5F A;  3TIX B;  2YBO A;  2PCG A;  3UV6 A;  2DSG A;  1CBF A;  3LMM A;  4E16 A;  3HH1 A;  3URK A;  2EHC A;  2E7R A;  1WDE A;  2EGL A;  2BB3 A;  2HUQ A;  4MUX A;  3KE8 A;  2PCA A;  2P2X A;  1WNG A;  2OWK A;  1VHV A;  4MV5 A;  2PCK A;  2ELE A;  2EGB A;  4H4C A;  2CBF A;  4H4E A;  1VE2 A;  2KYY A;  2EH2 A;  2QBU A;  2P5C A;  3FQ6 A;  3KEF A;  1PJS A;  2HUT A;  2P9D A;  4MV0 A;  3KEL A;  3ZGN A;  3FFY A;  2E4R A;  3KE9 A;  3UV7 A;  5HW4 A;  3KEM A;  2EKA A;  2DSI A;  2DEK A;  2EJJ A;  1WYZ A;  4EB3 A;  2EL3 A;  2P6I A;  2P6K A;  3DNF A;  3KWP A;  2EJZ A;  3UV3 A;  3I4T A;  3UTD A;  2NPN A;  2P6D A;  2DSH A;  2DV4 A;  2E08 A;  2E07 A;  2HUX A;  2HR8 A;  2PB4 A;  2PCI A;  2OWU A;  4H4D A;  3NEI A;  2EJK A;  2DXV A;  2EH5 A;  2EL1 A;  2OWG A;  2ENI A;  1V9A A;  2EK3 A;  2PCH A;  2YBQ A;  2PB6 A;  2ZVB A;  1PJQ A;  2EL0 A;  2E8H A;  2EK4 A;  2DV5 A;  3ZGL A;  2OWV A;  2EK7 A;  2EH4 A;  3SZU A;  2DV3 A;  2E8Q A;  1VA0 A;  3NUT A;  2OWF A;  2DV7 A;  2PB5 A;  2E16 A;  4N7B A;  2E4N A;  2EEQ A;  3UTC A;  2HUV A;  3NDC A;  4MUY A;  2EK2 A;  2DXX A;  2EHL A;  1VCE A;  2ED3 A;  3SZL A;  3T0F A;  2Z6R A;  3UWM A;  2EN5 A;  2P6L A;  1S4D A;  2ELD A;  2E0K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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