2EE5A

Solution structure of the n-teruminus extended rhogap domain from human rho gtpase activating protein 5 variant
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
219
structure length
219
Chain Sequence
GSSGSSGKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEIVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Rho GTPase activating protein 5 variant
publication title Solution structure of the N-teruminus extended RhoGAP domain from human Rho GTPase activating protein 5 variant
rcsb
source organism Homo sapiens
total genus 46
structure length 219
sequence length 219
ec nomenclature ec 3.6.5.2: Small monomeric GTPase.
pdb deposition date 2007-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00620 RhoGAP RhoGAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.555.10 Mainly Alpha Orthogonal Bundle Phosphatidylinositol 3-kinase; Chain A Rho GTPase activation protein 2ee5A01
2OSAA 2OVJA 1F7CA 2EE5A 3WPSA 3CXLA 3WPQA 5HPYA 3FK2A 3EAPA 1TX4A 1AM4A 5JCPA 2NGRB 5IRCA 3IUGA 1XA6A 2MBGA 3MSXB 1GRNB 1RGPA 5JD0A 3BYIA 2EE4A 2XS6A 1OW3A 3QISA 5C2JA 2QV2A 5C5SA 1PBWA 3KUQA 3W6RA
chains in the Genus database with same CATH superfamily
2OSAA 2OVJA 1F7CA 2EE5A 3WPSA 3CXLA 3WPQA 5HPYA 3FK2A 3EAPA 1TX4A 1AM4A 5JCPA 2NGRB 5IRCA 3IUGA 1XA6A 2MBGA 3MSXB 1GRNB 1RGPA 5JD0A 3BYIA 2EE4A 2XS6A 1OW3A 3QISA 5C2JA 2QV2A 5C5SA 1PBWA 3KUQA 3W6RA
chains in the Genus database with same CATH topology
2OSAA 2OVJA 1F7CA 2EE5A 3WPSA 3CXLA 3WPQA 5HPYA 3FK2A 3EAPA 1TX4A 1AM4A 5JCPA 2NGRB 5IRCA 3IUGA 1XA6A 2MBGA 3MSXB 1GRNB 1RGPA 5JD0A 3BYIA 2EE4A 2XS6A 1OW3A 3QISA 5C2JA 2QV2A 5C5SA 1PBWA 3KUQA 3W6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OSA A;  2OVJ A;  1F7C A;  2EE5 A;  3WPS A;  3CXL A;  3WPQ A;  5HPY A;  3FK2 A;  3EAP A;  1TX4 A;  1AM4 A;  5JCP A;  2NGR B;  5IRC A;  3IUG A;  1XA6 A;  2MBG A;  3MSX B;  1GRN B;  1RGP A;  5JD0 A;  3BYI A;  2EE4 A;  2XS6 A;  1OW3 A;  3QIS A;  5C2J A;  2QV2 A;  5C5S A;  1PBW A;  3KUQ A;  3W6R A; 
#chains in the Genus database with same CATH topology
 2OSA A;  2OVJ A;  1F7C A;  2EE5 A;  3WPS A;  3CXL A;  3WPQ A;  5HPY A;  3FK2 A;  3EAP A;  1TX4 A;  1AM4 A;  5JCP A;  2NGR B;  5IRC A;  3IUG A;  1XA6 A;  2MBG A;  3MSX B;  1GRN B;  1RGP A;  5JD0 A;  3BYI A;  2EE4 A;  2XS6 A;  1OW3 A;  3QIS A;  5C2J A;  2QV2 A;  5C5S A;  1PBW A;  3KUQ A;  3W6R A; 
#chains in the Genus database with same CATH homology
 2OSA A;  2OVJ A;  1F7C A;  2EE5 A;  3WPS A;  3CXL A;  3WPQ A;  5HPY A;  3FK2 A;  3EAP A;  1TX4 A;  1AM4 A;  5JCP A;  2NGR B;  5IRC A;  3IUG A;  1XA6 A;  2MBG A;  3MSX B;  1GRN B;  1RGP A;  5JD0 A;  3BYI A;  2EE4 A;  2XS6 A;  1OW3 A;  3QIS A;  5C2J A;  2QV2 A;  5C5S A;  1PBW A;  3KUQ A;  3W6R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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