2EF4A

Crystal structure of the arginase from thermus thermophilus
Total Genus 102
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
290
structure length
282
Chain Sequence
ERVAVVGVPMDLGANRRGVDMGPSALRYARLLEQLEDLGYTVEDLGDVPVSLARLAYLEEIRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAARGRRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLGHPRLTEVFRAVDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILAESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRIF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase
publication title Crystal structure of the arginase from thermus thermophilus
rcsb
source organism Thermus thermophilus
total genus 102
structure length 282
sequence length 290
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2007-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 2ef4A00
4RHMA 3E9BA 1P8SA 4FCIA 3MJLA 2CEVA 4GWCA 3F80A 3NIQA 4CEVA 1T4TA 1T4PA 2PHAA 1TBLA 1WVBA 3CEVA 4Q3TA 3RLAA 1R1OA 4MYKA 1T4SA 1P8NA 1GQ6A 3SKKA 4GSZA 4ITYA 4Q3RA 3TF3A 2ZAVA 3LP4A 1CEVA 3MMRA 4MYNA 1PQ3A 3DJ8A 3GN0A 4Q41A 4GSVA 4Q42A 2EIVA 4Q3UA 1WOHA 3LHLA 2PHOA 4RHJA 4MYFA 3MFVA 2PLLA 4IE3A 4RHKA 4G3HA 1WOGA 3E8QA 5HJ9A 4Q3QA 1HQXA 4HWWA 4HXQA 5HJAA 3MFWA 1HQFA 4GWDA 4MYLA 1P8RA 3E6KA 1TBHA 1T4RA 2EF5A 3NIOA 3THEA 3SJTA 3GMZA 1XFKA 1HQGA 4RLAA 1T5FA 1P8MA 5CEVA 1HQ5A 3E6VA 1D3VA 1WOIA 5RLAA 4I06A 1ZPEA 3THJA 3SL0A 3M1RA 4FCKA 2RLAA 2EF4A 3KV2A 4IU1A 3TH7A 3E8ZA 1HQHA 1T5GA 4IXUA 1P8OA 3PZLA 1TBJA 4IU4A 2AEBA 2A0MA 1RLAA 4GSMA 4IU0A 4Q3VA 1ZPGA 1GQ7A 4HZEA 4IE1A 4IE2A 3LP7A 4MXRA 4IU5A 4RHQA 4Q3PA 3NIPA 1P8QA 1TA1A 1P8PA 1WVAA 4RHIA 4DZ4A 4RHLA 4Q3RC 4Q40A 4Q3SA 3SL1A 3THHA 4IXVA
chains in the Genus database with same CATH superfamily
4RHMA 3E9BA 1P8SA 4FCIA 5G12A 3MJLA 2CEVA 5IX0A 4GWCA 3F80A 3NIQA 3SFFA 1T4TA 4CEVA 3Q9CA 1T4PA 5G1BA 2PHAA 4BZ8A 5BWZA 1TBLA 1WVBA 3CEVA 4Q3TA 3RLAA 1W22A 1R1OA 4CQFA 3C0YA 2VQVA 4MYKA 4ZUPA 5G1CA 5FCWA 1T4SA 1P8NA 1GQ6A 2VCGA 2VQQA 4QA7A 3F07A 3SKKA 4GSZA 5G0IA 3MZ6A 5G17A 4ITYA 4Q3RA 1T67A 1C3SA 4QA6A 5G0JA 3TF3A 2ZAVA 5EFKB 3LP4A 1CEVA 3MMRA 4MYNA 1PQ3A 4BZ7A 3DJ8A 5EENA 3GN0A 5EFNA 4GSVA 4Q42A 4Q41A 4ZUNA 2EIVA 4Q3UA 5D1DA 3C0ZA 1WOHA 3LHLA 5DC8A 2PHOA 4RHJA 4MYFA 3MFVA 1VKGA 2PLLA 4IE3A 4RHKA 5D1CA 4G3HA 1WOGA 3E8QA 4QA2A 5D1BA 4CBYA 5HJ9A 4Q3QA 1HQXA 4HWWA 5EEMA 5EFBD 3ZNRA 4HXQA 5EFGA 5JI5A 5HJAA 3ZNSA 3MFWA 3EZTA 4QA3A 1HQFA 5THTA 4GWDA 4MYLA 1P8RA 2V5XA 4CBTA 2VQJA 3E6KA 2VQMA 3F06A 4A69A 1ZZ0A 1TBHA 4RN1A 5EEFA 1T4RA 4BZ9A 5G0YA 2EF5A 4RN0A 4ZUOA 2VQOA 3F0RA 3NIOA 3THEA 3Q9FA 1C3RA 3SJTA 3GMZA 4LXZA 1XFKA 4QA0A 2V5WA 3MAXA 1HQGA 4RLAA 5DC5A 1T5FA 3MENA 1P8MA 3EWFA 5EFHA 1HQ5A 3E6VA 5EEKA 5CEVA 1D3VA 3Q9BA 5DC6A 5A2SA 1WOIA 5RLAA 3SFHA 4I06A 1ZPEA 5FUEA 3THJA 3SL0A 3M1RA 4FCKA 2RLAA 5DC7A 5G0GA 2EF4A 3KV2A 3MZ3A 4IU1A 3TH7A 3E8ZA 1HQHA 4QA4A 1T5GA 4IXUA 1P8OA 3PZLA 4BKXB 3C10A 1TBJA 4IU4A 5ICNB 5THVA 3RQDA 5THUA 2AEBA 1ZZ1A 2A0MA 1RLAA 5G11A 4GSMA 3EW8A 4IU0A 4Q3VA 4ZURA 1ZPGA 1GQ7A 4HZEA 4IE1A 4RN2A 1ZZ3A 5EF7A 4IE2A 1C3PA 2GH6A 4ZUMA 5IWGA 5THSA 3LP7A 4MXRA 4IU5A 4QA5A 4LY1A 4RHQA 4Q3PA 5G0XA 4BZ5A 3NIPA 1T69A 2VQWG 1P8QA 1T64A 5G10A 1TA1A 4QA1A 5EF8A 1P8PA 1WVAA 3MZ7A 4RHIA 5EFJD 4BZ6A 5G13A 3EZPA 4DZ4A 4RHLA 5G1AA 4Q3RC 4Q40A 5G3WA 4Q3SA 3SL1A 5LI3A 3MZ4A 3Q9EA 5EEIA 4ZUQA 5G0HA 3THHA 4IXVA
chains in the Genus database with same CATH topology
4RHMA 3E9BA 1P8SA 4FCIA 3MJLA 2CEVA 4GWCA 3F80A 3NIQA 4CEVA 1T4TA 1T4PA 2PHAA 1TBLA 1WVBA 3CEVA 4Q3TA 3RLAA 1R1OA 4MYKA 1T4SA 1P8NA 1GQ6A 3SKKA 4GSZA 4ITYA 4Q3RA 3TF3A 2ZAVA 3LP4A 1CEVA 3MMRA 4MYNA 1PQ3A 3DJ8A 3GN0A 4Q41A 4GSVA 4Q42A 2EIVA 4Q3UA 1WOHA 3LHLA 2PHOA 4RHJA 4MYFA 3MFVA 2PLLA 4IE3A 4RHKA 4G3HA 1WOGA 3E8QA 5HJ9A 4Q3QA 1HQXA 4HWWA 4HXQA 5HJAA 3MFWA 1HQFA 4GWDA 4MYLA 1P8RA 3E6KA 1TBHA 1T4RA 2EF5A 3NIOA 3THEA 3SJTA 3GMZA 1XFKA 1HQGA 4RLAA 1T5FA 1P8MA 5CEVA 1HQ5A 3E6VA 1D3VA 1WOIA 5RLAA 4I06A 1ZPEA 3THJA 3SL0A 3M1RA 4FCKA 2RLAA 2EF4A 3KV2A 4IU1A 3TH7A 3E8ZA 1HQHA 1T5GA 4IXUA 1P8OA 3PZLA 1TBJA 4IU4A 2AEBA 2A0MA 1RLAA 4GSMA 4IU0A 4Q3VA 1ZPGA 1GQ7A 4HZEA 4IE1A 4IE2A 3LP7A 4MXRA 4IU5A 4RHQA 4Q3PA 3NIPA 1P8QA 1TA1A 1P8PA 1WVAA 4RHIA 4DZ4A 4RHLA 4Q3RC 4Q40A 4Q3SA 3SL1A 3THHA 4IXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RHM A;  3E9B A;  1P8S A;  4FCI A;  3MJL A;  2CEV A;  4GWC A;  3F80 A;  3NIQ A;  4CEV A;  1T4T A;  1T4P A;  2PHA A;  1TBL A;  1WVB A;  3CEV A;  4Q3T A;  3RLA A;  1R1O A;  4MYK A;  1T4S A;  1P8N A;  1GQ6 A;  3SKK A;  4GSZ A;  4ITY A;  4Q3R A;  3TF3 A;  2ZAV A;  3LP4 A;  1CEV A;  3MMR A;  4MYN A;  1PQ3 A;  3DJ8 A;  3GN0 A;  4Q41 A;  4GSV A;  4Q42 A;  2EIV A;  4Q3U A;  1WOH A;  3LHL A;  2PHO A;  4RHJ A;  4MYF A;  3MFV A;  2PLL A;  4IE3 A;  4RHK A;  4G3H A;  1WOG A;  3E8Q A;  5HJ9 A;  4Q3Q A;  1HQX A;  4HWW A;  4HXQ A;  5HJA A;  3MFW A;  1HQF A;  4GWD A;  4MYL A;  1P8R A;  3E6K A;  1TBH A;  1T4R A;  2EF5 A;  3NIO A;  3THE A;  3SJT A;  3GMZ A;  1XFK A;  1HQG A;  4RLA A;  1T5F A;  1P8M A;  5CEV A;  1HQ5 A;  3E6V A;  1D3V A;  1WOI A;  5RLA A;  4I06 A;  1ZPE A;  3THJ A;  3SL0 A;  3M1R A;  4FCK A;  2RLA A;  2EF4 A;  3KV2 A;  4IU1 A;  3TH7 A;  3E8Z A;  1HQH A;  1T5G A;  4IXU A;  1P8O A;  3PZL A;  1TBJ A;  4IU4 A;  2AEB A;  2A0M A;  1RLA A;  4GSM A;  4IU0 A;  4Q3V A;  1ZPG A;  1GQ7 A;  4HZE A;  4IE1 A;  4IE2 A;  3LP7 A;  4MXR A;  4IU5 A;  4RHQ A;  4Q3P A;  3NIP A;  1P8Q A;  1TA1 A;  1P8P A;  1WVA A;  4RHI A;  4DZ4 A;  4RHL A;  4Q3R C;  4Q40 A;  4Q3S A;  3SL1 A;  3THH A;  4IXV A; 
#chains in the Genus database with same CATH topology
 4RHM A;  3E9B A;  1P8S A;  4FCI A;  5G12 A;  3MJL A;  2CEV A;  5IX0 A;  4GWC A;  3F80 A;  3NIQ A;  3SFF A;  1T4T A;  4CEV A;  3Q9C A;  1T4P A;  5G1B A;  2PHA A;  4BZ8 A;  5BWZ A;  1TBL A;  1WVB A;  3CEV A;  4Q3T A;  3RLA A;  1W22 A;  1R1O A;  4CQF A;  3C0Y A;  2VQV A;  4MYK A;  4ZUP A;  5G1C A;  5FCW A;  1T4S A;  1P8N A;  1GQ6 A;  2VCG A;  2VQQ A;  4QA7 A;  3F07 A;  3SKK A;  4GSZ A;  5G0I A;  3MZ6 A;  5G17 A;  4ITY A;  4Q3R A;  1T67 A;  1C3S A;  4QA6 A;  5G0J A;  3TF3 A;  2ZAV A;  5EFK B;  3LP4 A;  1CEV A;  3MMR A;  4MYN A;  1PQ3 A;  4BZ7 A;  3DJ8 A;  5EEN A;  3GN0 A;  5EFN A;  4GSV A;  4Q42 A;  4Q41 A;  4ZUN A;  2EIV A;  4Q3U A;  5D1D A;  3C0Z A;  1WOH A;  3LHL A;  5DC8 A;  2PHO A;  4RHJ A;  4MYF A;  3MFV A;  1VKG A;  2PLL A;  4IE3 A;  4RHK A;  5D1C A;  4G3H A;  1WOG A;  3E8Q A;  4QA2 A;  5D1B A;  4CBY A;  5HJ9 A;  4Q3Q A;  1HQX A;  4HWW A;  5EEM A;  5EFB D;  3ZNR A;  4HXQ A;  5EFG A;  5JI5 A;  5HJA A;  3ZNS A;  3MFW A;  3EZT A;  4QA3 A;  1HQF A;  5THT A;  4GWD A;  4MYL A;  1P8R A;  2V5X A;  4CBT A;  2VQJ A;  3E6K A;  2VQM A;  3F06 A;  4A69 A;  1ZZ0 A;  1TBH A;  4RN1 A;  5EEF A;  1T4R A;  4BZ9 A;  5G0Y A;  2EF5 A;  4RN0 A;  4ZUO A;  2VQO A;  3F0R A;  3NIO A;  3THE A;  3Q9F A;  1C3R A;  3SJT A;  3GMZ A;  4LXZ A;  1XFK A;  4QA0 A;  2V5W A;  3MAX A;  1HQG A;  4RLA A;  5DC5 A;  1T5F A;  3MEN A;  1P8M A;  3EWF A;  5EFH A;  1HQ5 A;  3E6V A;  5EEK A;  5CEV A;  1D3V A;  3Q9B A;  5DC6 A;  5A2S A;  1WOI A;  5RLA A;  3SFH A;  4I06 A;  1ZPE A;  5FUE A;  3THJ A;  3SL0 A;  3M1R A;  4FCK A;  2RLA A;  5DC7 A;  5G0G A;  2EF4 A;  3KV2 A;  3MZ3 A;  4IU1 A;  3TH7 A;  3E8Z A;  1HQH A;  4QA4 A;  1T5G A;  4IXU A;  1P8O A;  3PZL A;  4BKX B;  3C10 A;  1TBJ A;  4IU4 A;  5ICN B;  5THV A;  3RQD A;  5THU A;  2AEB A;  1ZZ1 A;  2A0M A;  1RLA A;  5G11 A;  4GSM A;  3EW8 A;  4IU0 A;  4Q3V A;  4ZUR A;  1ZPG A;  1GQ7 A;  4HZE A;  4IE1 A;  4RN2 A;  1ZZ3 A;  5EF7 A;  4IE2 A;  1C3P A;  2GH6 A;  4ZUM A;  5IWG A;  5THS A;  3LP7 A;  4MXR A;  4IU5 A;  4QA5 A;  4LY1 A;  4RHQ A;  4Q3P A;  5G0X A;  4BZ5 A;  3NIP A;  1T69 A;  2VQW G;  1P8Q A;  1T64 A;  5G10 A;  1TA1 A;  4QA1 A;  5EF8 A;  1P8P A;  1WVA A;  3MZ7 A;  4RHI A;  5EFJ D;  4BZ6 A;  5G13 A;  3EZP A;  4DZ4 A;  4RHL A;  5G1A A;  4Q3R C;  4Q40 A;  5G3W A;  4Q3S A;  3SL1 A;  5LI3 A;  3MZ4 A;  3Q9E A;  5EEI A;  4ZUQ A;  5G0H A;  3THH A;  4IXV A; 
#chains in the Genus database with same CATH homology
 4RHM A;  3E9B A;  1P8S A;  4FCI A;  3MJL A;  2CEV A;  4GWC A;  3F80 A;  3NIQ A;  4CEV A;  1T4T A;  1T4P A;  2PHA A;  1TBL A;  1WVB A;  3CEV A;  4Q3T A;  3RLA A;  1R1O A;  4MYK A;  1T4S A;  1P8N A;  1GQ6 A;  3SKK A;  4GSZ A;  4ITY A;  4Q3R A;  3TF3 A;  2ZAV A;  3LP4 A;  1CEV A;  3MMR A;  4MYN A;  1PQ3 A;  3DJ8 A;  3GN0 A;  4Q41 A;  4GSV A;  4Q42 A;  2EIV A;  4Q3U A;  1WOH A;  3LHL A;  2PHO A;  4RHJ A;  4MYF A;  3MFV A;  2PLL A;  4IE3 A;  4RHK A;  4G3H A;  1WOG A;  3E8Q A;  5HJ9 A;  4Q3Q A;  1HQX A;  4HWW A;  4HXQ A;  5HJA A;  3MFW A;  1HQF A;  4GWD A;  4MYL A;  1P8R A;  3E6K A;  1TBH A;  1T4R A;  2EF5 A;  3NIO A;  3THE A;  3SJT A;  3GMZ A;  1XFK A;  1HQG A;  4RLA A;  1T5F A;  1P8M A;  5CEV A;  1HQ5 A;  3E6V A;  1D3V A;  1WOI A;  5RLA A;  4I06 A;  1ZPE A;  3THJ A;  3SL0 A;  3M1R A;  4FCK A;  2RLA A;  2EF4 A;  3KV2 A;  4IU1 A;  3TH7 A;  3E8Z A;  1HQH A;  1T5G A;  4IXU A;  1P8O A;  3PZL A;  1TBJ A;  4IU4 A;  2AEB A;  2A0M A;  1RLA A;  4GSM A;  4IU0 A;  4Q3V A;  1ZPG A;  1GQ7 A;  4HZE A;  4IE1 A;  4IE2 A;  3LP7 A;  4MXR A;  4IU5 A;  4RHQ A;  4Q3P A;  3NIP A;  1P8Q A;  1TA1 A;  1P8P A;  1WVA A;  4RHI A;  4DZ4 A;  4RHL A;  4Q3R C;  4Q40 A;  4Q3S A;  3SL1 A;  3THH A;  4IXV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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