2EFBA

Crystal structure of the complex of goat lactoperoxidase with phosphate at 2.94 a resolution
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
595
structure length
595
Chain Sequence
SWEVGCGAPVPLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSSEHSKVQCEEYCVQGDECFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSAVDKLDLSPWASREN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Crystal structure of the complex of goat lactoperoxidase with phosphate at 2.94 A resolution
rcsb
total genus 186
structure length 595
sequence length 595
chains with identical sequence B
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2007-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 2efbA00
3QF1A 3OGWA 5GLSA 3BXIA 2OYEP 3KRKA 3UBAA 3NT1A 3OLTA 3NYHA 3PGHA 3LN1A 3NIUA 4PNXA 4C1MC 4KVLA 4FM5A 3N8YB 4NJBA 4OTJA 4HHSA 3N8XA 3Q7DA 1PXXA 2OYUP 1EBVA 1HT8A 5JW1A 2R5LA 4N7AA 4GN6A 2NQXA 3GCJA 1EQHA 1DNWC 4LJJA 4RRYA 3MDLA 1MHLC 4KSZA 4QJQA 4Z0LA 2Z5ZA 4RUTA 4PH9A 3MQEA 3N8VA 1U67A 3GCKA 4IG5A 3OLUA 5F19A 1HT5A 3F9PC 4RS0A 3R55A 1CQEA 4E1GA 1Q4GA 4COXA 2QRBA 5FIWC 2OJVA 3R5QA 4MSFA 1CVUA 1CX2A 5KIRA 3TZIA 2EFBA 1MYPC 3RKEA 3HS5A 3HS7A 6COXA 2PUMA 5COXA 3N8WB 5JVZA 3V6QA 1D5LC 3S4FA 5IKQA 3I6NA 1PTHA 1DNUC 1EQGA 5FDQA 5IKTA 5F1AA 4M11A 3N8YA 2AYLA 2O86A 3NTBA 3R5OA 2GJMA 1PRHA 1DDXA 4HHRA 2IPSA 2IKCA 3TGYA 5JVYA 3KK6A 3LN0A 1CXPC 3QH0A 3QL6A 2QPKA 3QMOA 3KRQA 3GC1A 1IGXA 5GH0A 3GCLA 3Q9KA 4O1ZA 3ZS1C 4M10A 3N8FA 3FAQA 3ZS0C 3NAKA 4QYQA 2QQTA 3R4XA 2EHAA 3ERIA 1IGZA 3ERHA 4OEKA 4GM7A 4Y55A 4OTYA 1D2VC 1D7WC 3HS6A 3NTGA 1FE2A 1DIYA 4RRWA 5HPWA 5IKVA 3N8ZA 4RRZA 3SXVA 1PGEA 4KVJA 4NT3A 4KVKA 2E9EA 5B72A 4DL1C 2PT3A 3N8WA 5FF1A 3FNLA 3PY4A 5IKRA 4RRXA 3RR3A
chains in the Genus database with same CATH superfamily
3QF1A 3OGWA 5GLSA 3BXIA 2OYEP 3KRKA 3UBAA 3NT1A 3OLTA 3NYHA 3PGHA 3LN1A 3NIUA 4PNXA 4C1MC 4KVLA 4FM5A 3N8YB 4NJBA 4OTJA 4HHSA 3N8XA 3Q7DA 1PXXA 2OYUP 1EBVA 1HT8A 5JW1A 2R5LA 4N7AA 4GN6A 2NQXA 3GCJA 1EQHA 1DNWC 4LJJA 4RRYA 3MDLA 1MHLC 4KSZA 4QJQA 4Z0LA 2Z5ZA 4RUTA 4PH9A 3MQEA 3N8VA 1U67A 3GCKA 4IG5A 3OLUA 5F19A 1HT5A 3F9PC 4RS0A 3R55A 1CQEA 4E1GA 1Q4GA 4COXA 2QRBA 5FIWC 2OJVA 3R5QA 4MSFA 1CVUA 1CX2A 5KIRA 3TZIA 2EFBA 1MYPC 3RKEA 3HS5A 3HS7A 6COXA 2PUMA 5COXA 3N8WB 5JVZA 3V6QA 1D5LC 3S4FA 5IKQA 3I6NA 1PTHA 1DNUC 1EQGA 5FDQA 5IKTA 5F1AA 4M11A 3N8YA 2AYLA 2O86A 3NTBA 3R5OA 2GJMA 1PRHA 1DDXA 4HHRA 2IPSA 2IKCA 3TGYA 5JVYA 3KK6A 3LN0A 1CXPC 3QH0A 3QL6A 2QPKA 3QMOA 3KRQA 3GC1A 1IGXA 5GH0A 3GCLA 3Q9KA 4O1ZA 3ZS1C 4M10A 3N8FA 3FAQA 3ZS0C 3NAKA 4QYQA 2QQTA 3R4XA 2EHAA 3ERIA 1IGZA 3ERHA 4OEKA 4GM7A 4Y55A 4OTYA 1D2VC 1D7WC 3HS6A 3NTGA 1FE2A 1DIYA 4RRWA 5HPWA 5IKVA 3N8ZA 4RRZA 3SXVA 1PGEA 4KVJA 4NT3A 4KVKA 2E9EA 5B72A 4DL1C 2PT3A 3N8WA 5FF1A 3FNLA 3PY4A 5IKRA 4RRXA 3RR3A
chains in the Genus database with same CATH topology
3QF1A 3OGWA 5GLSA 3BXIA 2OYEP 3KRKA 3UBAA 3NT1A 3OLTA 3NYHA 3PGHA 3LN1A 3NIUA 4PNXA 4C1MC 4KVLA 4FM5A 3N8YB 4NJBA 4OTJA 4HHSA 3N8XA 3Q7DA 1PXXA 2OYUP 1EBVA 1HT8A 5JW1A 2R5LA 4N7AA 4GN6A 2NQXA 3GCJA 1EQHA 1DNWC 4LJJA 4RRYA 3MDLA 1MHLC 4KSZA 4QJQA 4Z0LA 2Z5ZA 4RUTA 4PH9A 3MQEA 3N8VA 1U67A 3GCKA 4IG5A 3OLUA 5F19A 1HT5A 3F9PC 4RS0A 3R55A 1CQEA 4E1GA 1Q4GA 4COXA 2QRBA 5FIWC 2OJVA 3R5QA 4MSFA 1CVUA 1CX2A 5KIRA 3TZIA 2EFBA 1MYPC 3RKEA 3HS5A 3HS7A 6COXA 2PUMA 5COXA 3N8WB 5JVZA 3V6QA 1D5LC 3S4FA 5IKQA 3I6NA 1PTHA 1DNUC 1EQGA 5FDQA 5IKTA 5F1AA 4M11A 3N8YA 2AYLA 2O86A 3NTBA 3R5OA 2GJMA 1PRHA 1DDXA 4HHRA 2IPSA 2IKCA 3TGYA 5JVYA 3KK6A 3LN0A 1CXPC 3QH0A 3QL6A 2QPKA 3QMOA 3KRQA 3GC1A 1IGXA 5GH0A 3GCLA 3Q9KA 4O1ZA 3ZS1C 4M10A 3N8FA 3FAQA 3ZS0C 3NAKA 4QYQA 2QQTA 3R4XA 2EHAA 3ERIA 1IGZA 3ERHA 4OEKA 4GM7A 4Y55A 4OTYA 1D2VC 1D7WC 3HS6A 3NTGA 1FE2A 1DIYA 4RRWA 5HPWA 5IKVA 3N8ZA 4RRZA 3SXVA 1PGEA 4KVJA 4NT3A 4KVKA 2E9EA 5B72A 4DL1C 2PT3A 3N8WA 5FF1A 3FNLA 3PY4A 5IKRA 4RRXA 3RR3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QF1 A;  3OGW A;  5GLS A;  3BXI A;  2OYE P;  3KRK A;  3UBA A;  3NT1 A;  3OLT A;  3NYH A;  3PGH A;  3LN1 A;  3NIU A;  4PNX A;  4C1M C;  4KVL A;  4FM5 A;  3N8Y B;  4NJB A;  4OTJ A;  4HHS A;  3N8X A;  3Q7D A;  1PXX A;  2OYU P;  1EBV A;  1HT8 A;  5JW1 A;  2R5L A;  4N7A A;  4GN6 A;  2NQX A;  3GCJ A;  1EQH A;  1DNW C;  4LJJ A;  4RRY A;  3MDL A;  1MHL C;  4KSZ A;  4QJQ A;  4Z0L A;  2Z5Z A;  4RUT A;  4PH9 A;  3MQE A;  3N8V A;  1U67 A;  3GCK A;  4IG5 A;  3OLU A;  5F19 A;  1HT5 A;  3F9P C;  4RS0 A;  3R55 A;  1CQE A;  4E1G A;  1Q4G A;  4COX A;  2QRB A;  5FIW C;  2OJV A;  3R5Q A;  4MSF A;  1CVU A;  1CX2 A;  5KIR A;  3TZI A;  2EFB A;  1MYP C;  3RKE A;  3HS5 A;  3HS7 A;  6COX A;  2PUM A;  5COX A;  3N8W B;  5JVZ A;  3V6Q A;  1D5L C;  3S4F A;  5IKQ A;  3I6N A;  1PTH A;  1DNU C;  1EQG A;  5FDQ A;  5IKT A;  5F1A A;  4M11 A;  3N8Y A;  2AYL A;  2O86 A;  3NTB A;  3R5O A;  2GJM A;  1PRH A;  1DDX A;  4HHR A;  2IPS A;  2IKC A;  3TGY A;  5JVY A;  3KK6 A;  3LN0 A;  1CXP C;  3QH0 A;  3QL6 A;  2QPK A;  3QMO A;  3KRQ A;  3GC1 A;  1IGX A;  5GH0 A;  3GCL A;  3Q9K A;  4O1Z A;  3ZS1 C;  4M10 A;  3N8F A;  3FAQ A;  3ZS0 C;  3NAK A;  4QYQ A;  2QQT A;  3R4X A;  2EHA A;  3ERI A;  1IGZ A;  3ERH A;  4OEK A;  4GM7 A;  4Y55 A;  4OTY A;  1D2V C;  1D7W C;  3HS6 A;  3NTG A;  1FE2 A;  1DIY A;  4RRW A;  5HPW A;  5IKV A;  3N8Z A;  4RRZ A;  3SXV A;  1PGE A;  4KVJ A;  4NT3 A;  4KVK A;  2E9E A;  5B72 A;  4DL1 C;  2PT3 A;  3N8W A;  5FF1 A;  3FNL A;  3PY4 A;  5IKR A;  4RRX A;  3RR3 A; 
#chains in the Genus database with same CATH topology
 3QF1 A;  3OGW A;  5GLS A;  3BXI A;  2OYE P;  3KRK A;  3UBA A;  3NT1 A;  3OLT A;  3NYH A;  3PGH A;  3LN1 A;  3NIU A;  4PNX A;  4C1M C;  4KVL A;  4FM5 A;  3N8Y B;  4NJB A;  4OTJ A;  4HHS A;  3N8X A;  3Q7D A;  1PXX A;  2OYU P;  1EBV A;  1HT8 A;  5JW1 A;  2R5L A;  4N7A A;  4GN6 A;  2NQX A;  3GCJ A;  1EQH A;  1DNW C;  4LJJ A;  4RRY A;  3MDL A;  1MHL C;  4KSZ A;  4QJQ A;  4Z0L A;  2Z5Z A;  4RUT A;  4PH9 A;  3MQE A;  3N8V A;  1U67 A;  3GCK A;  4IG5 A;  3OLU A;  5F19 A;  1HT5 A;  3F9P C;  4RS0 A;  3R55 A;  1CQE A;  4E1G A;  1Q4G A;  4COX A;  2QRB A;  5FIW C;  2OJV A;  3R5Q A;  4MSF A;  1CVU A;  1CX2 A;  5KIR A;  3TZI A;  2EFB A;  1MYP C;  3RKE A;  3HS5 A;  3HS7 A;  6COX A;  2PUM A;  5COX A;  3N8W B;  5JVZ A;  3V6Q A;  1D5L C;  3S4F A;  5IKQ A;  3I6N A;  1PTH A;  1DNU C;  1EQG A;  5FDQ A;  5IKT A;  5F1A A;  4M11 A;  3N8Y A;  2AYL A;  2O86 A;  3NTB A;  3R5O A;  2GJM A;  1PRH A;  1DDX A;  4HHR A;  2IPS A;  2IKC A;  3TGY A;  5JVY A;  3KK6 A;  3LN0 A;  1CXP C;  3QH0 A;  3QL6 A;  2QPK A;  3QMO A;  3KRQ A;  3GC1 A;  1IGX A;  5GH0 A;  3GCL A;  3Q9K A;  4O1Z A;  3ZS1 C;  4M10 A;  3N8F A;  3FAQ A;  3ZS0 C;  3NAK A;  4QYQ A;  2QQT A;  3R4X A;  2EHA A;  3ERI A;  1IGZ A;  3ERH A;  4OEK A;  4GM7 A;  4Y55 A;  4OTY A;  1D2V C;  1D7W C;  3HS6 A;  3NTG A;  1FE2 A;  1DIY A;  4RRW A;  5HPW A;  5IKV A;  3N8Z A;  4RRZ A;  3SXV A;  1PGE A;  4KVJ A;  4NT3 A;  4KVK A;  2E9E A;  5B72 A;  4DL1 C;  2PT3 A;  3N8W A;  5FF1 A;  3FNL A;  3PY4 A;  5IKR A;  4RRX A;  3RR3 A; 
#chains in the Genus database with same CATH homology
 3QF1 A;  3OGW A;  5GLS A;  3BXI A;  2OYE P;  3KRK A;  3UBA A;  3NT1 A;  3OLT A;  3NYH A;  3PGH A;  3LN1 A;  3NIU A;  4PNX A;  4C1M C;  4KVL A;  4FM5 A;  3N8Y B;  4NJB A;  4OTJ A;  4HHS A;  3N8X A;  3Q7D A;  1PXX A;  2OYU P;  1EBV A;  1HT8 A;  5JW1 A;  2R5L A;  4N7A A;  4GN6 A;  2NQX A;  3GCJ A;  1EQH A;  1DNW C;  4LJJ A;  4RRY A;  3MDL A;  1MHL C;  4KSZ A;  4QJQ A;  4Z0L A;  2Z5Z A;  4RUT A;  4PH9 A;  3MQE A;  3N8V A;  1U67 A;  3GCK A;  4IG5 A;  3OLU A;  5F19 A;  1HT5 A;  3F9P C;  4RS0 A;  3R55 A;  1CQE A;  4E1G A;  1Q4G A;  4COX A;  2QRB A;  5FIW C;  2OJV A;  3R5Q A;  4MSF A;  1CVU A;  1CX2 A;  5KIR A;  3TZI A;  2EFB A;  1MYP C;  3RKE A;  3HS5 A;  3HS7 A;  6COX A;  2PUM A;  5COX A;  3N8W B;  5JVZ A;  3V6Q A;  1D5L C;  3S4F A;  5IKQ A;  3I6N A;  1PTH A;  1DNU C;  1EQG A;  5FDQ A;  5IKT A;  5F1A A;  4M11 A;  3N8Y A;  2AYL A;  2O86 A;  3NTB A;  3R5O A;  2GJM A;  1PRH A;  1DDX A;  4HHR A;  2IPS A;  2IKC A;  3TGY A;  5JVY A;  3KK6 A;  3LN0 A;  1CXP C;  3QH0 A;  3QL6 A;  2QPK A;  3QMO A;  3KRQ A;  3GC1 A;  1IGX A;  5GH0 A;  3GCL A;  3Q9K A;  4O1Z A;  3ZS1 C;  4M10 A;  3N8F A;  3FAQ A;  3ZS0 C;  3NAK A;  4QYQ A;  2QQT A;  3R4X A;  2EHA A;  3ERI A;  1IGZ A;  3ERH A;  4OEK A;  4GM7 A;  4Y55 A;  4OTY A;  1D2V C;  1D7W C;  3HS6 A;  3NTG A;  1FE2 A;  1DIY A;  4RRW A;  5HPW A;  5IKV A;  3N8Z A;  4RRZ A;  3SXV A;  1PGE A;  4KVJ A;  4NT3 A;  4KVK A;  2E9E A;  5B72 A;  4DL1 C;  2PT3 A;  3N8W A;  5FF1 A;  3FNL A;  3PY4 A;  5IKR A;  4RRX A;  3RR3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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