2EGSA

Crystal structure of leu261 to met mutant of diphthine synthase
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREIMRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 80
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2egsA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2egsA01
2E17A 2HUVA 2EK7A 2E07A 2PB5A 2EK2A 2P9DA 2HR8A 2P6DA 2OWKA 2HUQA 2DV7A 1WYZA 2EEQA 2NPNA 1WDEA 2E16A 3KWPA 2ELEA 2E8HA 2EH4A 1VHVA 2EL2A 2E8RA 2EL3A 2EMRA 1VE2A 2E08A 1PJQA 2OWVA 2EJJA 4E16A 1V9AA 2E4RA 2EH5A 2PCMA 3HH1A 2P6IA 2P5FA 2DV5A 2ZVBA 3I4TA 3FQ6A 2ELDA 2QBUA 2OWFA 2EJZA 1PJTA 2DSIA 2P6LA 2Z6RA 2EHCA 2DSGA 2PCIA 1WNGA 1PJSA 2CBFA 2P6KA 2HUXA 2OWGA 2EGBA 2E0KA 2HUTA 2YBQA 2PCHA 2EK3A 2DXVA 1VCEA 1VA0A 2EH2A 2ZVCA 3ND1A 2E4NA 2EGSA 2E7RA 2EL1A 2P5CA 2EJKA 3NDCA 3NEIA 2P2XA 2ED5A 2E8SA 2PB6A 2ENIA 2EKAA 2EN5A 2E15A 2DXWA 2E0NA 2E8QA 5HW4A 2DSHA 2ED3A 2PB4A 2PCGA 2DEKA 1S4DA 2EMUA 2PCKA 2EGLA 2DV4A 2EHLA 2EL0A 2YBOA 2EK4A 1CBFA 2BB3A 2DV3A 3FFYA 3NUTA 2DXXA 2OWUA 2PCAA
chains in the Genus database with same CATH superfamily
2E17A 3KELA 2HUVA 2EK7A 2E07A 2PB5A 2EK2A 2P9DA 2HR8A 2P6DA 2OWKA 2HUQA 2DV7A 1WYZA 2EEQA 2NPNA 1WDEA 2E16A 3KWPA 2ELEA 3KE8A 2E8HA 2EH4A 1VHVA 3LMMA 2EL2A 2E8RA 4MV5A 2EL3A 2EMRA 1VE2A 3T0FA 2E08A 1PJQA 2OWVA 2EJJA 3ZGLA 4E16A 4MV0A 3KEMA 1V9AA 2E4RA 4EB3A 2EH5A 2PCMA 3HH1A 2P6IA 3F7TA 4H4EA 3URKA 3SZLA 2P5FA 2DV5A 2ZVBA 3I4TA 3FQ6A 2ELDA 2QBUA 2OWFA 2EJZA 1PJTA 2DSIA 2P6LA 2Z6RA 2EHCA 3UV3A 2DSGA 3KEFA 2PCIA 1WNGA 3UV7A 1PJSA 2CBFA 2P6KA 2HUXA 2OWGA 2EGBA 2E0KA 3SZUA 2HUTA 2YBQA 4H4DA 2PCHA 2EK3A 3DNFA 3UTCA 2DXVA 1VCEA 3UTDA 4MUXA 1VA0A 2EH2A 2ZVCA 4MUYA 3ND1A 2E4NA 3ZGNA 2EGSA 2E7RA 2EL1A 3T0GA 2P5CA 2EJKA 3NDCA 2KYYA 3NEIA 2P2XA 2ED5A 2E8SA 2PB6A 3KE9A 2ENIA 2EKAA 2EN5A 2E15A 2DXWA 2E0NA 2E8QA 5HW4A 4H4CA 3SZOA 2DSHA 2ED3A 2PB4A 3UV6A 2PCGA 2DEKA 1S4DA 2EMUA 2PCKA 2EGLA 4N7BA 2DV4A 2EHLA 2EL0A 2YBOA 2EK4A 1CBFA 3UWMA 3TIXB 2BB3A 2DV3A 3FFYA 3NUTA 2DXXA 2OWUA 2PCAA
chains in the Genus database with same CATH topology
2E17A 3KELA 2HUVA 2EK7A 2E07A 2PB5A 2EK2A 2P9DA 2HR8A 2P6DA 2OWKA 2HUQA 2DV7A 1WYZA 2EEQA 2NPNA 1WDEA 2E16A 3KWPA 2ELEA 3KE8A 2E8HA 2EH4A 1VHVA 3LMMA 2EL2A 2E8RA 4MV5A 2EL3A 2EMRA 1VE2A 3T0FA 2E08A 1PJQA 2OWVA 2EJJA 3ZGLA 4E16A 4MV0A 3KEMA 1V9AA 2E4RA 4EB3A 2EH5A 2PCMA 3HH1A 2P6IA 3F7TA 4H4EA 3URKA 3SZLA 2P5FA 2DV5A 2ZVBA 3I4TA 3FQ6A 2ELDA 2QBUA 2OWFA 2EJZA 1PJTA 2DSIA 2P6LA 2Z6RA 2EHCA 3UV3A 2DSGA 3KEFA 2PCIA 1WNGA 3UV7A 1PJSA 2CBFA 2P6KA 2HUXA 2OWGA 2EGBA 2E0KA 3SZUA 2HUTA 2YBQA 4H4DA 2PCHA 2EK3A 3DNFA 3UTCA 2DXVA 1VCEA 3UTDA 4MUXA 1VA0A 2EH2A 2ZVCA 4MUYA 3ND1A 2E4NA 3ZGNA 2EGSA 2E7RA 2EL1A 3T0GA 2P5CA 2EJKA 3NDCA 2KYYA 3NEIA 2P2XA 2ED5A 2E8SA 2PB6A 3KE9A 2ENIA 2EKAA 2EN5A 2E15A 2DXWA 2E0NA 2E8QA 5HW4A 4H4CA 3SZOA 2DSHA 2ED3A 2PB4A 3UV6A 2PCGA 2DEKA 1S4DA 2EMUA 2PCKA 2EGLA 4N7BA 2DV4A 2EHLA 2EL0A 2YBOA 2EK4A 1CBFA 3UWMA 3TIXB 2BB3A 2DV3A 3FFYA 3NUTA 2DXXA 2OWUA 2PCAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E17 A;  2HUV A;  2EK7 A;  2E07 A;  2PB5 A;  2EK2 A;  2P9D A;  2HR8 A;  2P6D A;  2OWK A;  2HUQ A;  2DV7 A;  1WYZ A;  2EEQ A;  2NPN A;  1WDE A;  2E16 A;  3KWP A;  2ELE A;  2E8H A;  2EH4 A;  1VHV A;  2EL2 A;  2E8R A;  2EL3 A;  2EMR A;  1VE2 A;  2E08 A;  1PJQ A;  2OWV A;  2EJJ A;  4E16 A;  1V9A A;  2E4R A;  2EH5 A;  2PCM A;  3HH1 A;  2P6I A;  2P5F A;  2DV5 A;  2ZVB A;  3I4T A;  3FQ6 A;  2ELD A;  2QBU A;  2OWF A;  2EJZ A;  1PJT A;  2DSI A;  2P6L A;  2Z6R A;  2EHC A;  2DSG A;  2PCI A;  1WNG A;  1PJS A;  2CBF A;  2P6K A;  2HUX A;  2OWG A;  2EGB A;  2E0K A;  2HUT A;  2YBQ A;  2PCH A;  2EK3 A;  2DXV A;  1VCE A;  1VA0 A;  2EH2 A;  2ZVC A;  3ND1 A;  2E4N A;  2EGS A;  2E7R A;  2EL1 A;  2P5C A;  2EJK A;  3NDC A;  3NEI A;  2P2X A;  2ED5 A;  2E8S A;  2PB6 A;  2ENI A;  2EKA A;  2EN5 A;  2E15 A;  2DXW A;  2E0N A;  2E8Q A;  5HW4 A;  2DSH A;  2ED3 A;  2PB4 A;  2PCG A;  2DEK A;  1S4D A;  2EMU A;  2PCK A;  2EGL A;  2DV4 A;  2EHL A;  2EL0 A;  2YBO A;  2EK4 A;  1CBF A;  2BB3 A;  2DV3 A;  3FFY A;  3NUT A;  2DXX A;  2OWU A;  2PCA A; 
#chains in the Genus database with same CATH topology
 2E17 A;  3KEL A;  2HUV A;  2EK7 A;  2E07 A;  2PB5 A;  2EK2 A;  2P9D A;  2HR8 A;  2P6D A;  2OWK A;  2HUQ A;  2DV7 A;  1WYZ A;  2EEQ A;  2NPN A;  1WDE A;  2E16 A;  3KWP A;  2ELE A;  3KE8 A;  2E8H A;  2EH4 A;  1VHV A;  3LMM A;  2EL2 A;  2E8R A;  4MV5 A;  2EL3 A;  2EMR A;  1VE2 A;  3T0F A;  2E08 A;  1PJQ A;  2OWV A;  2EJJ A;  3ZGL A;  4E16 A;  4MV0 A;  3KEM A;  1V9A A;  2E4R A;  4EB3 A;  2EH5 A;  2PCM A;  3HH1 A;  2P6I A;  3F7T A;  4H4E A;  3URK A;  3SZL A;  2P5F A;  2DV5 A;  2ZVB A;  3I4T A;  3FQ6 A;  2ELD A;  2QBU A;  2OWF A;  2EJZ A;  1PJT A;  2DSI A;  2P6L A;  2Z6R A;  2EHC A;  3UV3 A;  2DSG A;  3KEF A;  2PCI A;  1WNG A;  3UV7 A;  1PJS A;  2CBF A;  2P6K A;  2HUX A;  2OWG A;  2EGB A;  2E0K A;  3SZU A;  2HUT A;  2YBQ A;  4H4D A;  2PCH A;  2EK3 A;  3DNF A;  3UTC A;  2DXV A;  1VCE A;  3UTD A;  4MUX A;  1VA0 A;  2EH2 A;  2ZVC A;  4MUY A;  3ND1 A;  2E4N A;  3ZGN A;  2EGS A;  2E7R A;  2EL1 A;  3T0G A;  2P5C A;  2EJK A;  3NDC A;  2KYY A;  3NEI A;  2P2X A;  2ED5 A;  2E8S A;  2PB6 A;  3KE9 A;  2ENI A;  2EKA A;  2EN5 A;  2E15 A;  2DXW A;  2E0N A;  2E8Q A;  5HW4 A;  4H4C A;  3SZO A;  2DSH A;  2ED3 A;  2PB4 A;  3UV6 A;  2PCG A;  2DEK A;  1S4D A;  2EMU A;  2PCK A;  2EGL A;  4N7B A;  2DV4 A;  2EHL A;  2EL0 A;  2YBO A;  2EK4 A;  1CBF A;  3UWM A;  3TIX B;  2BB3 A;  2DV3 A;  3FFY A;  3NUT A;  2DXX A;  2OWU A;  2PCA A; 
#chains in the Genus database with same CATH homology
 2E17 A;  3KEL A;  2HUV A;  2EK7 A;  2E07 A;  2PB5 A;  2EK2 A;  2P9D A;  2HR8 A;  2P6D A;  2OWK A;  2HUQ A;  2DV7 A;  1WYZ A;  2EEQ A;  2NPN A;  1WDE A;  2E16 A;  3KWP A;  2ELE A;  3KE8 A;  2E8H A;  2EH4 A;  1VHV A;  3LMM A;  2EL2 A;  2E8R A;  4MV5 A;  2EL3 A;  2EMR A;  1VE2 A;  3T0F A;  2E08 A;  1PJQ A;  2OWV A;  2EJJ A;  3ZGL A;  4E16 A;  4MV0 A;  3KEM A;  1V9A A;  2E4R A;  4EB3 A;  2EH5 A;  2PCM A;  3HH1 A;  2P6I A;  3F7T A;  4H4E A;  3URK A;  3SZL A;  2P5F A;  2DV5 A;  2ZVB A;  3I4T A;  3FQ6 A;  2ELD A;  2QBU A;  2OWF A;  2EJZ A;  1PJT A;  2DSI A;  2P6L A;  2Z6R A;  2EHC A;  3UV3 A;  2DSG A;  3KEF A;  2PCI A;  1WNG A;  3UV7 A;  1PJS A;  2CBF A;  2P6K A;  2HUX A;  2OWG A;  2EGB A;  2E0K A;  3SZU A;  2HUT A;  2YBQ A;  4H4D A;  2PCH A;  2EK3 A;  3DNF A;  3UTC A;  2DXV A;  1VCE A;  3UTD A;  4MUX A;  1VA0 A;  2EH2 A;  2ZVC A;  4MUY A;  3ND1 A;  2E4N A;  3ZGN A;  2EGS A;  2E7R A;  2EL1 A;  3T0G A;  2P5C A;  2EJK A;  3NDC A;  2KYY A;  3NEI A;  2P2X A;  2ED5 A;  2E8S A;  2PB6 A;  3KE9 A;  2ENI A;  2EKA A;  2EN5 A;  2E15 A;  2DXW A;  2E0N A;  2E8Q A;  5HW4 A;  4H4C A;  3SZO A;  2DSH A;  2ED3 A;  2PB4 A;  3UV6 A;  2PCG A;  2DEK A;  1S4D A;  2EMU A;  2PCK A;  2EGL A;  4N7B A;  2DV4 A;  2EHL A;  2EL0 A;  2YBO A;  2EK4 A;  1CBF A;  3UWM A;  3TIX B;  2BB3 A;  2DV3 A;  3FFY A;  3NUT A;  2DXX A;  2OWU A;  2PCA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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