2EIJL

Bovine heart cytochrome c oxidase in the fully reduced state
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
46
structure length
46
Chain Sequence
HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
total genus 12
structure length 46
sequence length 46
chains with identical sequence Y
ec nomenclature
pdb deposition date 2007-03-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.49.10 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome c oxidase subunit VIIc 2eijL00
1OCCL 1OCRL 1OCZL 5IY5L 3X2QL 3ABML 2EIJL 5B3SL 1OCOL 2EIML 2DYSL 1V54L 3AG3L 2ZXWL 2Y69L 2DYRL 2EILL 3AG4L 3ASNL 5B1AL 3ASOL 2EIKL 2OCCL 3AG1L 3WG7L 1V55L 3ABKL 5B1BL 2EINL 3AG2L 3ABLL
chains in the Genus database with same CATH superfamily
1OCCL 1OCRL 1OCZL 5IY5L 3X2QL 3ABML 2EIJL 5B3SL 1OCOL 2EIML 2DYSL 1V54L 3AG3L 2ZXWL 2Y69L 2DYRL 2EILL 3AG4L 3ASNL 5B1AL 3ASOL 2EIKL 2OCCL 3AG1L 3WG7L 1V55L 3ABKL 5B1BL 2EINL 3AG2L 3ABLL
chains in the Genus database with same CATH topology
1OCCL 1OCRL 1OCZL 5IY5L 3X2QL 3ABML 2EIJL 5B3SL 1OCOL 2EIML 2DYSL 1V54L 3AG3L 2ZXWL 2Y69L 2DYRL 2EILL 3AG4L 3ASNL 5B1AL 3ASOL 2EIKL 2OCCL 3AG1L 3WG7L 1V55L 3ABKL 5B1BL 2EINL 3AG2L 3ABLL
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1OCC L;  1OCR L;  1OCZ L;  5IY5 L;  3X2Q L;  3ABM L;  2EIJ L;  5B3S L;  1OCO L;  2EIM L;  2DYS L;  1V54 L;  3AG3 L;  2ZXW L;  2Y69 L;  2DYR L;  2EIL L;  3AG4 L;  3ASN L;  5B1A L;  3ASO L;  2EIK L;  2OCC L;  3AG1 L;  3WG7 L;  1V55 L;  3ABK L;  5B1B L;  2EIN L;  3AG2 L;  3ABL L; 
#chains in the Genus database with same CATH topology
 1OCC L;  1OCR L;  1OCZ L;  5IY5 L;  3X2Q L;  3ABM L;  2EIJ L;  5B3S L;  1OCO L;  2EIM L;  2DYS L;  1V54 L;  3AG3 L;  2ZXW L;  2Y69 L;  2DYR L;  2EIL L;  3AG4 L;  3ASN L;  5B1A L;  3ASO L;  2EIK L;  2OCC L;  3AG1 L;  3WG7 L;  1V55 L;  3ABK L;  5B1B L;  2EIN L;  3AG2 L;  3ABL L; 
#chains in the Genus database with same CATH homology
 1OCC L;  1OCR L;  1OCZ L;  5IY5 L;  3X2Q L;  3ABM L;  2EIJ L;  5B3S L;  1OCO L;  2EIM L;  2DYS L;  1V54 L;  3AG3 L;  2ZXW L;  2Y69 L;  2DYR L;  2EIL L;  3AG4 L;  3ASN L;  5B1A L;  3ASO L;  2EIK L;  2OCC L;  3AG1 L;  3WG7 L;  1V55 L;  3ABK L;  5B1B L;  2EIN L;  3AG2 L;  3ABL L;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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