2EJJA

Mutant k129m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYMFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant K129M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 85
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ejjA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ejjA01
2DV3A 2P9DA 3I4TA 2EEQA 2EGSA 3NUTA 2P6IA 2E15A 1WNGA 2NPNA 2DXXA 2ELEA 2BB3A 2EMRA 2HR8A 2DV7A 1VCEA 2EJZA 3FQ6A 1PJSA 2E8QA 2EH5A 2OWKA 1CBFA 2EGBA 1WYZA 2EKAA 2P6LA 2PB6A 2E4RA 2EK2A 2ED5A 2PCGA 2EHLA 2YBQA 4E16A 2EL2A 2PCMA 2HUTA 2PCKA 2EJKA 2EGLA 3NEIA 2E8HA 2E8SA 2EL3A 2E7RA 2E8RA 3FFYA 2E0NA 1S4DA 2HUQA 2DV5A 1VHVA 2PCIA 2EJJA 2P2XA 2OWGA 1PJTA 2EK7A 2ED3A 2EN5A 1PJQA 2EL0A 2E4NA 2ZVCA 2DV4A 2P6KA 2P6DA 2HUVA 3KWPA 2E0KA 2EH2A 2CBFA 2ZVBA 2YBOA 2EK3A 1VE2A 2P5FA 2DSHA 2Z6RA 2DSGA 2E07A 1V9AA 2OWUA 2EL1A 2E16A 2DXWA 3HH1A 2PB4A 1WDEA 1VA0A 2OWFA 2PCHA 2ELDA 2PCAA 2OWVA 2ENIA 2HUXA 2EMUA 2P5CA 2PB5A 5HW4A 2E08A 2DSIA 2EK4A 2QBUA 3NDCA 2DEKA 2E17A 2EH4A 2DXVA 3ND1A 2EHCA
chains in the Genus database with same CATH superfamily
2DV3A 2P9DA 3I4TA 2EEQA 2EGSA 3NUTA 2P6IA 2E15A 1WNGA 3ZGNA 2NPNA 2DXXA 4N7BA 2ELEA 2BB3A 2EMRA 2HR8A 2DV7A 4H4DA 1VCEA 2EJZA 3FQ6A 1PJSA 2E8QA 2EH5A 2OWKA 1CBFA 2EGBA 1WYZA 2EKAA 2P6LA 3TIXB 3UTDA 2PB6A 3UWMA 3KE8A 2E4RA 2EK2A 2ED5A 3UV6A 2PCGA 4EB3A 2EHLA 2YBQA 4E16A 2EL2A 2PCMA 4H4CA 3KELA 4MUYA 2HUTA 2PCKA 2EJKA 2EGLA 3NEIA 3SZOA 2E8HA 2E8SA 3DNFA 2EL3A 2E7RA 2E8RA 3FFYA 2E0NA 1S4DA 3T0GA 2HUQA 3F7TA 2DV5A 1VHVA 2PCIA 2EJJA 2P2XA 4MUXA 2OWGA 1PJTA 2EK7A 2ED3A 2EN5A 1PJQA 2EL0A 2E4NA 2ZVCA 2DV4A 2P6KA 2P6DA 2HUVA 3KWPA 2E0KA 3SZUA 3URKA 2EH2A 2CBFA 2ZVBA 2YBOA 4H4EA 2EK3A 1VE2A 3KEFA 2P5FA 2DSHA 2Z6RA 2DSGA 2KYYA 2E07A 1V9AA 2OWUA 2EL1A 2E16A 2DXWA 3HH1A 2PB4A 1WDEA 3UV3A 1VA0A 2OWFA 2PCHA 2ELDA 2PCAA 3SZLA 3T0FA 2OWVA 2ENIA 3UTCA 2HUXA 2EMUA 4MV5A 2P5CA 2PB5A 5HW4A 2E08A 2DSIA 2EK4A 3KEMA 2QBUA 3NDCA 2DEKA 2E17A 3KE9A 2EH4A 2DXVA 4MV0A 3ZGLA 3ND1A 2EHCA 3UV7A 3LMMA
chains in the Genus database with same CATH topology
2DV3A 2P9DA 3I4TA 2EEQA 2EGSA 3NUTA 2P6IA 2E15A 1WNGA 3ZGNA 2NPNA 2DXXA 4N7BA 2ELEA 2BB3A 2EMRA 2HR8A 2DV7A 4H4DA 1VCEA 2EJZA 3FQ6A 1PJSA 2E8QA 2EH5A 2OWKA 1CBFA 2EGBA 1WYZA 2EKAA 2P6LA 3TIXB 3UTDA 2PB6A 3UWMA 3KE8A 2E4RA 2EK2A 2ED5A 3UV6A 2PCGA 4EB3A 2EHLA 2YBQA 4E16A 2EL2A 2PCMA 4H4CA 3KELA 4MUYA 2HUTA 2PCKA 2EJKA 2EGLA 3NEIA 3SZOA 2E8HA 2E8SA 3DNFA 2EL3A 2E7RA 2E8RA 3FFYA 2E0NA 1S4DA 3T0GA 2HUQA 3F7TA 2DV5A 1VHVA 2PCIA 2EJJA 2P2XA 4MUXA 2OWGA 1PJTA 2EK7A 2ED3A 2EN5A 1PJQA 2EL0A 2E4NA 2ZVCA 2DV4A 2P6KA 2P6DA 2HUVA 3KWPA 2E0KA 3SZUA 3URKA 2EH2A 2CBFA 2ZVBA 2YBOA 4H4EA 2EK3A 1VE2A 3KEFA 2P5FA 2DSHA 2Z6RA 2DSGA 2KYYA 2E07A 1V9AA 2OWUA 2EL1A 2E16A 2DXWA 3HH1A 2PB4A 1WDEA 3UV3A 1VA0A 2OWFA 2PCHA 2ELDA 2PCAA 3SZLA 3T0FA 2OWVA 2ENIA 3UTCA 2HUXA 2EMUA 4MV5A 2P5CA 2PB5A 5HW4A 2E08A 2DSIA 2EK4A 3KEMA 2QBUA 3NDCA 2DEKA 2E17A 3KE9A 2EH4A 2DXVA 4MV0A 3ZGLA 3ND1A 2EHCA 3UV7A 3LMMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DV3 A;  2P9D A;  3I4T A;  2EEQ A;  2EGS A;  3NUT A;  2P6I A;  2E15 A;  1WNG A;  2NPN A;  2DXX A;  2ELE A;  2BB3 A;  2EMR A;  2HR8 A;  2DV7 A;  1VCE A;  2EJZ A;  3FQ6 A;  1PJS A;  2E8Q A;  2EH5 A;  2OWK A;  1CBF A;  2EGB A;  1WYZ A;  2EKA A;  2P6L A;  2PB6 A;  2E4R A;  2EK2 A;  2ED5 A;  2PCG A;  2EHL A;  2YBQ A;  4E16 A;  2EL2 A;  2PCM A;  2HUT A;  2PCK A;  2EJK A;  2EGL A;  3NEI A;  2E8H A;  2E8S A;  2EL3 A;  2E7R A;  2E8R A;  3FFY A;  2E0N A;  1S4D A;  2HUQ A;  2DV5 A;  1VHV A;  2PCI A;  2EJJ A;  2P2X A;  2OWG A;  1PJT A;  2EK7 A;  2ED3 A;  2EN5 A;  1PJQ A;  2EL0 A;  2E4N A;  2ZVC A;  2DV4 A;  2P6K A;  2P6D A;  2HUV A;  3KWP A;  2E0K A;  2EH2 A;  2CBF A;  2ZVB A;  2YBO A;  2EK3 A;  1VE2 A;  2P5F A;  2DSH A;  2Z6R A;  2DSG A;  2E07 A;  1V9A A;  2OWU A;  2EL1 A;  2E16 A;  2DXW A;  3HH1 A;  2PB4 A;  1WDE A;  1VA0 A;  2OWF A;  2PCH A;  2ELD A;  2PCA A;  2OWV A;  2ENI A;  2HUX A;  2EMU A;  2P5C A;  2PB5 A;  5HW4 A;  2E08 A;  2DSI A;  2EK4 A;  2QBU A;  3NDC A;  2DEK A;  2E17 A;  2EH4 A;  2DXV A;  3ND1 A;  2EHC A; 
#chains in the Genus database with same CATH topology
 2DV3 A;  2P9D A;  3I4T A;  2EEQ A;  2EGS A;  3NUT A;  2P6I A;  2E15 A;  1WNG A;  3ZGN A;  2NPN A;  2DXX A;  4N7B A;  2ELE A;  2BB3 A;  2EMR A;  2HR8 A;  2DV7 A;  4H4D A;  1VCE A;  2EJZ A;  3FQ6 A;  1PJS A;  2E8Q A;  2EH5 A;  2OWK A;  1CBF A;  2EGB A;  1WYZ A;  2EKA A;  2P6L A;  3TIX B;  3UTD A;  2PB6 A;  3UWM A;  3KE8 A;  2E4R A;  2EK2 A;  2ED5 A;  3UV6 A;  2PCG A;  4EB3 A;  2EHL A;  2YBQ A;  4E16 A;  2EL2 A;  2PCM A;  4H4C A;  3KEL A;  4MUY A;  2HUT A;  2PCK A;  2EJK A;  2EGL A;  3NEI A;  3SZO A;  2E8H A;  2E8S A;  3DNF A;  2EL3 A;  2E7R A;  2E8R A;  3FFY A;  2E0N A;  1S4D A;  3T0G A;  2HUQ A;  3F7T A;  2DV5 A;  1VHV A;  2PCI A;  2EJJ A;  2P2X A;  4MUX A;  2OWG A;  1PJT A;  2EK7 A;  2ED3 A;  2EN5 A;  1PJQ A;  2EL0 A;  2E4N A;  2ZVC A;  2DV4 A;  2P6K A;  2P6D A;  2HUV A;  3KWP A;  2E0K A;  3SZU A;  3URK A;  2EH2 A;  2CBF A;  2ZVB A;  2YBO A;  4H4E A;  2EK3 A;  1VE2 A;  3KEF A;  2P5F A;  2DSH A;  2Z6R A;  2DSG A;  2KYY A;  2E07 A;  1V9A A;  2OWU A;  2EL1 A;  2E16 A;  2DXW A;  3HH1 A;  2PB4 A;  1WDE A;  3UV3 A;  1VA0 A;  2OWF A;  2PCH A;  2ELD A;  2PCA A;  3SZL A;  3T0F A;  2OWV A;  2ENI A;  3UTC A;  2HUX A;  2EMU A;  4MV5 A;  2P5C A;  2PB5 A;  5HW4 A;  2E08 A;  2DSI A;  2EK4 A;  3KEM A;  2QBU A;  3NDC A;  2DEK A;  2E17 A;  3KE9 A;  2EH4 A;  2DXV A;  4MV0 A;  3ZGL A;  3ND1 A;  2EHC A;  3UV7 A;  3LMM A; 
#chains in the Genus database with same CATH homology
 2DV3 A;  2P9D A;  3I4T A;  2EEQ A;  2EGS A;  3NUT A;  2P6I A;  2E15 A;  1WNG A;  3ZGN A;  2NPN A;  2DXX A;  4N7B A;  2ELE A;  2BB3 A;  2EMR A;  2HR8 A;  2DV7 A;  4H4D A;  1VCE A;  2EJZ A;  3FQ6 A;  1PJS A;  2E8Q A;  2EH5 A;  2OWK A;  1CBF A;  2EGB A;  1WYZ A;  2EKA A;  2P6L A;  3TIX B;  3UTD A;  2PB6 A;  3UWM A;  3KE8 A;  2E4R A;  2EK2 A;  2ED5 A;  3UV6 A;  2PCG A;  4EB3 A;  2EHL A;  2YBQ A;  4E16 A;  2EL2 A;  2PCM A;  4H4C A;  3KEL A;  4MUY A;  2HUT A;  2PCK A;  2EJK A;  2EGL A;  3NEI A;  3SZO A;  2E8H A;  2E8S A;  3DNF A;  2EL3 A;  2E7R A;  2E8R A;  3FFY A;  2E0N A;  1S4D A;  3T0G A;  2HUQ A;  3F7T A;  2DV5 A;  1VHV A;  2PCI A;  2EJJ A;  2P2X A;  4MUX A;  2OWG A;  1PJT A;  2EK7 A;  2ED3 A;  2EN5 A;  1PJQ A;  2EL0 A;  2E4N A;  2ZVC A;  2DV4 A;  2P6K A;  2P6D A;  2HUV A;  3KWP A;  2E0K A;  3SZU A;  3URK A;  2EH2 A;  2CBF A;  2ZVB A;  2YBO A;  4H4E A;  2EK3 A;  1VE2 A;  3KEF A;  2P5F A;  2DSH A;  2Z6R A;  2DSG A;  2KYY A;  2E07 A;  1V9A A;  2OWU A;  2EL1 A;  2E16 A;  2DXW A;  3HH1 A;  2PB4 A;  1WDE A;  3UV3 A;  1VA0 A;  2OWF A;  2PCH A;  2ELD A;  2PCA A;  3SZL A;  3T0F A;  2OWV A;  2ENI A;  3UTC A;  2HUX A;  2EMU A;  4MV5 A;  2P5C A;  2PB5 A;  5HW4 A;  2E08 A;  2DSI A;  2EK4 A;  3KEM A;  2QBU A;  3NDC A;  2DEK A;  2E17 A;  3KE9 A;  2EH4 A;  2DXV A;  4MV0 A;  3ZGL A;  3ND1 A;  2EHC A;  3UV7 A;  3LMM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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