2EJKA

Mutant l38m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSMMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Mutant L38M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ejkA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ejkA01
1WYZA 2ENIA 2E0KA 5HW4A 2EEQA 3FFYA 2CBFA 2E16A 2EL3A 1PJTA 1WDEA 2E8SA 2OWVA 2EJKA 1WNGA 2E15A 2DEKA 2ED5A 2EMUA 3I4TA 2EGSA 2E0NA 2DV5A 2PCMA 3NDCA 2P5CA 2OWUA 2DSHA 2ELDA 3ND1A 2EH2A 2PB4A 2EK3A 2E17A 3NUTA 2EK7A 2EHLA 2P5FA 2DV3A 2DXWA 2NPNA 2HR8A 2ED3A 2EGLA 2DXXA 2P6DA 2HUQA 2DV7A 2OWFA 1CBFA 3NEIA 2EK2A 2E7RA 2E8RA 2DXVA 2E8QA 2P6LA 2EL1A 2EN5A 2EL0A 3KWPA 2ELEA 1VE2A 2DSGA 2PCAA 1VCEA 2EL2A 2YBOA 2E08A 2DSIA 1S4DA 2EJJA 2QBUA 2P2XA 2HUVA 2PCHA 2PCKA 2DV4A 2E07A 2E4NA 2EH4A 2EH5A 2E4RA 2PB6A 2EK4A 2EMRA 2YBQA 1V9AA 2HUXA 1VA0A 2EHCA 2HUTA 2BB3A 2EKAA 2EGBA 2P6KA 1PJSA 2P6IA 2EJZA 3FQ6A 2OWGA 2PB5A 1VHVA 2PCIA 2ZVCA 3HH1A 2OWKA 4E16A 2ZVBA 2E8HA 2P9DA 1PJQA 2PCGA 2Z6RA
chains in the Genus database with same CATH superfamily
1WYZA 2ENIA 2E0KA 5HW4A 3UTDA 2EEQA 3FFYA 2CBFA 4MV5A 2E16A 3SZUA 2EL3A 1PJTA 1WDEA 2E8SA 2OWVA 2EJKA 1WNGA 2E15A 2DEKA 2ED5A 2EMUA 3I4TA 2EGSA 2E0NA 3SZOA 2DV5A 2PCMA 3NDCA 2P5CA 3KEMA 3UWMA 2OWUA 2DSHA 3TIXB 2ELDA 3ND1A 2EH2A 4MUXA 4EB3A 2PB4A 3UV3A 4MUYA 2EK3A 3ZGLA 2KYYA 2E17A 3NUTA 2EK7A 2EHLA 2P5FA 2DV3A 2DXWA 2NPNA 3T0GA 2HR8A 2ED3A 3KEFA 3KELA 2EGLA 2DXXA 2P6DA 2HUQA 2DV7A 2OWFA 3F7TA 1CBFA 3NEIA 2EK2A 2E7RA 2E8RA 2DXVA 2E8QA 2P6LA 4MV0A 2EL1A 2EN5A 2EL0A 3KWPA 2ELEA 1VE2A 2DSGA 2PCAA 1VCEA 2EL2A 2YBOA 3UV7A 2E08A 2DSIA 1S4DA 2EJJA 2QBUA 2P2XA 2HUVA 2PCHA 2PCKA 2DV4A 2E07A 4H4EA 2E4NA 2EH4A 4N7BA 2EH5A 4H4CA 3T0FA 2E4RA 2PB6A 2EK4A 2EMRA 3KE9A 2YBQA 1V9AA 2HUXA 3SZLA 1VA0A 2EHCA 2HUTA 2BB3A 2EKAA 2EGBA 2P6KA 3LMMA 1PJSA 3UTCA 2P6IA 2EJZA 3FQ6A 3ZGNA 2OWGA 3UV6A 2PB5A 1VHVA 4H4DA 2PCIA 2ZVCA 3HH1A 2OWKA 3DNFA 4E16A 2ZVBA 3KE8A 2E8HA 2P9DA 1PJQA 2PCGA 3URKA 2Z6RA
chains in the Genus database with same CATH topology
1WYZA 2ENIA 2E0KA 5HW4A 3UTDA 2EEQA 3FFYA 2CBFA 4MV5A 2E16A 3SZUA 2EL3A 1PJTA 1WDEA 2E8SA 2OWVA 2EJKA 1WNGA 2E15A 2DEKA 2ED5A 2EMUA 3I4TA 2EGSA 2E0NA 3SZOA 2DV5A 2PCMA 3NDCA 2P5CA 3KEMA 3UWMA 2OWUA 2DSHA 3TIXB 2ELDA 3ND1A 2EH2A 4MUXA 4EB3A 2PB4A 3UV3A 4MUYA 2EK3A 3ZGLA 2KYYA 2E17A 3NUTA 2EK7A 2EHLA 2P5FA 2DV3A 2DXWA 2NPNA 3T0GA 2HR8A 2ED3A 3KEFA 3KELA 2EGLA 2DXXA 2P6DA 2HUQA 2DV7A 2OWFA 3F7TA 1CBFA 3NEIA 2EK2A 2E7RA 2E8RA 2DXVA 2E8QA 2P6LA 4MV0A 2EL1A 2EN5A 2EL0A 3KWPA 2ELEA 1VE2A 2DSGA 2PCAA 1VCEA 2EL2A 2YBOA 3UV7A 2E08A 2DSIA 1S4DA 2EJJA 2QBUA 2P2XA 2HUVA 2PCHA 2PCKA 2DV4A 2E07A 4H4EA 2E4NA 2EH4A 4N7BA 2EH5A 4H4CA 3T0FA 2E4RA 2PB6A 2EK4A 2EMRA 3KE9A 2YBQA 1V9AA 2HUXA 3SZLA 1VA0A 2EHCA 2HUTA 2BB3A 2EKAA 2EGBA 2P6KA 3LMMA 1PJSA 3UTCA 2P6IA 2EJZA 3FQ6A 3ZGNA 2OWGA 3UV6A 2PB5A 1VHVA 4H4DA 2PCIA 2ZVCA 3HH1A 2OWKA 3DNFA 4E16A 2ZVBA 3KE8A 2E8HA 2P9DA 1PJQA 2PCGA 3URKA 2Z6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WYZ A;  2ENI A;  2E0K A;  5HW4 A;  2EEQ A;  3FFY A;  2CBF A;  2E16 A;  2EL3 A;  1PJT A;  1WDE A;  2E8S A;  2OWV A;  2EJK A;  1WNG A;  2E15 A;  2DEK A;  2ED5 A;  2EMU A;  3I4T A;  2EGS A;  2E0N A;  2DV5 A;  2PCM A;  3NDC A;  2P5C A;  2OWU A;  2DSH A;  2ELD A;  3ND1 A;  2EH2 A;  2PB4 A;  2EK3 A;  2E17 A;  3NUT A;  2EK7 A;  2EHL A;  2P5F A;  2DV3 A;  2DXW A;  2NPN A;  2HR8 A;  2ED3 A;  2EGL A;  2DXX A;  2P6D A;  2HUQ A;  2DV7 A;  2OWF A;  1CBF A;  3NEI A;  2EK2 A;  2E7R A;  2E8R A;  2DXV A;  2E8Q A;  2P6L A;  2EL1 A;  2EN5 A;  2EL0 A;  3KWP A;  2ELE A;  1VE2 A;  2DSG A;  2PCA A;  1VCE A;  2EL2 A;  2YBO A;  2E08 A;  2DSI A;  1S4D A;  2EJJ A;  2QBU A;  2P2X A;  2HUV A;  2PCH A;  2PCK A;  2DV4 A;  2E07 A;  2E4N A;  2EH4 A;  2EH5 A;  2E4R A;  2PB6 A;  2EK4 A;  2EMR A;  2YBQ A;  1V9A A;  2HUX A;  1VA0 A;  2EHC A;  2HUT A;  2BB3 A;  2EKA A;  2EGB A;  2P6K A;  1PJS A;  2P6I A;  2EJZ A;  3FQ6 A;  2OWG A;  2PB5 A;  1VHV A;  2PCI A;  2ZVC A;  3HH1 A;  2OWK A;  4E16 A;  2ZVB A;  2E8H A;  2P9D A;  1PJQ A;  2PCG A;  2Z6R A; 
#chains in the Genus database with same CATH topology
 1WYZ A;  2ENI A;  2E0K A;  5HW4 A;  3UTD A;  2EEQ A;  3FFY A;  2CBF A;  4MV5 A;  2E16 A;  3SZU A;  2EL3 A;  1PJT A;  1WDE A;  2E8S A;  2OWV A;  2EJK A;  1WNG A;  2E15 A;  2DEK A;  2ED5 A;  2EMU A;  3I4T A;  2EGS A;  2E0N A;  3SZO A;  2DV5 A;  2PCM A;  3NDC A;  2P5C A;  3KEM A;  3UWM A;  2OWU A;  2DSH A;  3TIX B;  2ELD A;  3ND1 A;  2EH2 A;  4MUX A;  4EB3 A;  2PB4 A;  3UV3 A;  4MUY A;  2EK3 A;  3ZGL A;  2KYY A;  2E17 A;  3NUT A;  2EK7 A;  2EHL A;  2P5F A;  2DV3 A;  2DXW A;  2NPN A;  3T0G A;  2HR8 A;  2ED3 A;  3KEF A;  3KEL A;  2EGL A;  2DXX A;  2P6D A;  2HUQ A;  2DV7 A;  2OWF A;  3F7T A;  1CBF A;  3NEI A;  2EK2 A;  2E7R A;  2E8R A;  2DXV A;  2E8Q A;  2P6L A;  4MV0 A;  2EL1 A;  2EN5 A;  2EL0 A;  3KWP A;  2ELE A;  1VE2 A;  2DSG A;  2PCA A;  1VCE A;  2EL2 A;  2YBO A;  3UV7 A;  2E08 A;  2DSI A;  1S4D A;  2EJJ A;  2QBU A;  2P2X A;  2HUV A;  2PCH A;  2PCK A;  2DV4 A;  2E07 A;  4H4E A;  2E4N A;  2EH4 A;  4N7B A;  2EH5 A;  4H4C A;  3T0F A;  2E4R A;  2PB6 A;  2EK4 A;  2EMR A;  3KE9 A;  2YBQ A;  1V9A A;  2HUX A;  3SZL A;  1VA0 A;  2EHC A;  2HUT A;  2BB3 A;  2EKA A;  2EGB A;  2P6K A;  3LMM A;  1PJS A;  3UTC A;  2P6I A;  2EJZ A;  3FQ6 A;  3ZGN A;  2OWG A;  3UV6 A;  2PB5 A;  1VHV A;  4H4D A;  2PCI A;  2ZVC A;  3HH1 A;  2OWK A;  3DNF A;  4E16 A;  2ZVB A;  3KE8 A;  2E8H A;  2P9D A;  1PJQ A;  2PCG A;  3URK A;  2Z6R A; 
#chains in the Genus database with same CATH homology
 1WYZ A;  2ENI A;  2E0K A;  5HW4 A;  3UTD A;  2EEQ A;  3FFY A;  2CBF A;  4MV5 A;  2E16 A;  3SZU A;  2EL3 A;  1PJT A;  1WDE A;  2E8S A;  2OWV A;  2EJK A;  1WNG A;  2E15 A;  2DEK A;  2ED5 A;  2EMU A;  3I4T A;  2EGS A;  2E0N A;  3SZO A;  2DV5 A;  2PCM A;  3NDC A;  2P5C A;  3KEM A;  3UWM A;  2OWU A;  2DSH A;  3TIX B;  2ELD A;  3ND1 A;  2EH2 A;  4MUX A;  4EB3 A;  2PB4 A;  3UV3 A;  4MUY A;  2EK3 A;  3ZGL A;  2KYY A;  2E17 A;  3NUT A;  2EK7 A;  2EHL A;  2P5F A;  2DV3 A;  2DXW A;  2NPN A;  3T0G A;  2HR8 A;  2ED3 A;  3KEF A;  3KEL A;  2EGL A;  2DXX A;  2P6D A;  2HUQ A;  2DV7 A;  2OWF A;  3F7T A;  1CBF A;  3NEI A;  2EK2 A;  2E7R A;  2E8R A;  2DXV A;  2E8Q A;  2P6L A;  4MV0 A;  2EL1 A;  2EN5 A;  2EL0 A;  3KWP A;  2ELE A;  1VE2 A;  2DSG A;  2PCA A;  1VCE A;  2EL2 A;  2YBO A;  3UV7 A;  2E08 A;  2DSI A;  1S4D A;  2EJJ A;  2QBU A;  2P2X A;  2HUV A;  2PCH A;  2PCK A;  2DV4 A;  2E07 A;  4H4E A;  2E4N A;  2EH4 A;  4N7B A;  2EH5 A;  4H4C A;  3T0F A;  2E4R A;  2PB6 A;  2EK4 A;  2EMR A;  3KE9 A;  2YBQ A;  1V9A A;  2HUX A;  3SZL A;  1VA0 A;  2EHC A;  2HUT A;  2BB3 A;  2EKA A;  2EGB A;  2P6K A;  3LMM A;  1PJS A;  3UTC A;  2P6I A;  2EJZ A;  3FQ6 A;  3ZGN A;  2OWG A;  3UV6 A;  2PB5 A;  1VHV A;  4H4D A;  2PCI A;  2ZVC A;  3HH1 A;  2OWK A;  3DNF A;  4E16 A;  2ZVB A;  3KE8 A;  2E8H A;  2P9D A;  1PJQ A;  2PCG A;  3URK A;  2Z6R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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