2EK0A

Stage v sporolation protein s (spovs) from thermus thermophilus zinc form
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
90
structure length
90
Chain Sequence
METLRVSSKSRPNSVAGAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLELENEERTALKFSIKAHPLET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Stage V sporulation protein S (SpoVS) related protein
publication title Stage V Sporolation Protein S (SPOVS) from Thermus thermophilus Zinc form
rcsb
source organism Thermus thermophilus
total genus 26
structure length 90
sequence length 90
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04232 SpoVS Stage V sporulation protein S (SpoVS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.20 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Alba-like domain 2ek0A00
1NFHA 3U6YA 3IABA 3IABB 1VM0A 2Q3VA 3TOEA 1NFJA 2EH1A 3WBMA 2H9UA 2Z7CA 1Y9XA 2BKYX 1H0YA 1UDVA 1NH9A 1H0XA 2A2YA 2EK0A 4Z9EA
chains in the Genus database with same CATH superfamily
3QKBA 4K87A 3IABA 3U6YA 3IABB 4HVZA 2Q3VA 1PAVA 4TWAA 3VTHA 2Z7CA 1NJ5A 1Y9XA 3TTDA 1LN4A 4FCXA 1S8EA 4EO0A 4FBKA 3HZ7A 1JDQA 3ZIGA 1H0XA 2A2YA 1NJ1A 1H4SA 4FBWA 2CRQA 4FBQA 1NFHA 1H4QA 3TSQA 3TSUA 1Y2IA 1NFJA 3WBMA 4Q15A 2H9UA 2LXRA 3LVJC 1UDVA 4OLFA 2M71A 1NH9A 1II7A 3TSPA 1H4TA 3TTCA 3IALA 2Y1BA 3LVKB 2L8YA 2EH1A 4Z9EA 1NJ8A 1NJ6A 4HD0A 4K86A 2LN3A 3DSCA 2P9BA 4WI1A 3ZIHA 4HVCA 1JO0A 3DSDA 4NZRM 3TTFA 1VR4A 1HC7A 1VM0A 1XEZA 3TOEA 1DCJA 1JE3A 1TIGA 4YDQA 3VTIA 2GTCA 2BKYX 1H0YA 4NCXA 4K88A 4YKEA 3P04A 1RQ8A 3ZIIA 3ZIEA 2IFEA 3T1IA 2EK0A 1NJ2A 4NZTM
chains in the Genus database with same CATH topology
1NFHA 3U6YA 3IABA 3IABB 1VM0A 2Q3VA 3TOEA 1NFJA 2EH1A 3WBMA 2H9UA 2Z7CA 1Y9XA 2BKYX 1H0YA 1UDVA 1NH9A 1H0XA 2A2YA 2EK0A 4Z9EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NFH A;  3U6Y A;  3IAB A;  3IAB B;  1VM0 A;  2Q3V A;  3TOE A;  1NFJ A;  2EH1 A;  3WBM A;  2H9U A;  2Z7C A;  1Y9X A;  2BKY X;  1H0Y A;  1UDV A;  1NH9 A;  1H0X A;  2A2Y A;  2EK0 A;  4Z9E A; 
#chains in the Genus database with same CATH topology
 3QKB A;  4K87 A;  3IAB A;  3U6Y A;  3IAB B;  4HVZ A;  2Q3V A;  1PAV A;  4TWA A;  3VTH A;  2Z7C A;  1NJ5 A;  1Y9X A;  3TTD A;  1LN4 A;  4FCX A;  1S8E A;  4EO0 A;  4FBK A;  3HZ7 A;  1JDQ A;  3ZIG A;  1H0X A;  2A2Y A;  1NJ1 A;  1H4S A;  4FBW A;  2CRQ A;  4FBQ A;  1NFH A;  1H4Q A;  3TSQ A;  3TSU A;  1Y2I A;  1NFJ A;  3WBM A;  4Q15 A;  2H9U A;  2LXR A;  3LVJ C;  1UDV A;  4OLF A;  2M71 A;  1NH9 A;  1II7 A;  3TSP A;  1H4T A;  3TTC A;  3IAL A;  2Y1B A;  3LVK B;  2L8Y A;  2EH1 A;  4Z9E A;  1NJ8 A;  1NJ6 A;  4HD0 A;  4K86 A;  2LN3 A;  3DSC A;  2P9B A;  4WI1 A;  3ZIH A;  4HVC A;  1JO0 A;  3DSD A;  4NZR M;  3TTF A;  1VR4 A;  1HC7 A;  1VM0 A;  1XEZ A;  3TOE A;  1DCJ A;  1JE3 A;  1TIG A;  4YDQ A;  3VTI A;  2GTC A;  2BKY X;  1H0Y A;  4NCX A;  4K88 A;  4YKE A;  3P04 A;  1RQ8 A;  3ZII A;  3ZIE A;  2IFE A;  3T1I A;  2EK0 A;  1NJ2 A;  4NZT M; 
#chains in the Genus database with same CATH homology
 1NFH A;  3U6Y A;  3IAB A;  3IAB B;  1VM0 A;  2Q3V A;  3TOE A;  1NFJ A;  2EH1 A;  3WBM A;  2H9U A;  2Z7C A;  1Y9X A;  2BKY X;  1H0Y A;  1UDV A;  1NH9 A;  1H0X A;  2A2Y A;  2EK0 A;  4Z9E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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