2EK3A

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l3m)
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
264
structure length
264
Chain Sequence
VMYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L3M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 80
structure length 264
sequence length 264
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ek3A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ek3A01
2P6LA 2HR8A 2EGLA 3FFYA 3KWPA 5HW4A 2E07A 1VCEA 1PJQA 2DSIA 2EHCA 2CBFA 2E0NA 2PB4A 2PB6A 2E17A 2HUVA 2E4RA 2OWFA 2EK3A 2ED5A 2HUTA 2EEQA 2EJZA 2E0KA 2P6DA 2ZVBA 2E8RA 2PCKA 1CBFA 2DXXA 2ENIA 2EH4A 2P6IA 1PJSA 2OWKA 2PCHA 2E16A 2OWVA 2P5CA 2EGBA 2DXWA 2BB3A 2EHLA 1WYZA 1S4DA 2DV7A 2DSHA 3I4TA 2PCGA 2ED3A 2DV3A 2E15A 2OWGA 2ELDA 2ELEA 1VE2A 2E8SA 3FQ6A 3NUTA 2P6KA 2DEKA 2E7RA 2E4NA 2PB5A 2DV5A 2HUXA 2PCAA 2EGSA 1WNGA 2EL0A 2DSGA 2Z6RA 2P5FA 2NPNA 2EL1A 2PCMA 2OWUA 2EH5A 2E8HA 2YBOA 3ND1A 2EJKA 2DV4A 2EMUA 2EMRA 1PJTA 1VHVA 2DXVA 2QBUA 2EL3A 2EK4A 1WDEA 2EKAA 2EL2A 2EJJA 2YBQA 2P9DA 2E08A 3NDCA 1V9AA 2PCIA 1VA0A 2EK7A 3HH1A 3NEIA 4E16A 2EK2A 2EN5A 2HUQA 2ZVCA 2E8QA 2P2XA 2EH2A
chains in the Genus database with same CATH superfamily
2P6LA 2HR8A 2EGLA 3KEMA 3FFYA 3KWPA 3TIXB 5HW4A 2E07A 1VCEA 1PJQA 2DSIA 2EHCA 2CBFA 2E0NA 3UV6A 2PB4A 3DNFA 4MV0A 2PB6A 4MV5A 2E17A 2HUVA 2E4RA 2OWFA 2EK3A 2ED5A 2HUTA 2EEQA 2EJZA 4MUYA 3T0FA 3ZGNA 2E0KA 2P6DA 2ZVBA 3KE9A 2E8RA 2PCKA 4H4DA 1CBFA 2DXXA 2ENIA 2EH4A 2P6IA 1PJSA 2OWKA 2PCHA 2E16A 2OWVA 2P5CA 2EGBA 2DXWA 3SZOA 4H4CA 3UTDA 2BB3A 2EHLA 1WYZA 1S4DA 2DV7A 3UV3A 2DSHA 3I4TA 2PCGA 2ED3A 3UTCA 2DV3A 2E15A 4N7BA 2OWGA 2ELDA 2ELEA 1VE2A 2E8SA 3FQ6A 3NUTA 2P6KA 2DEKA 3URKA 2E7RA 2E4NA 2PB5A 2DV5A 2HUXA 3UWMA 2PCAA 2EGSA 1WNGA 2EL0A 3UV7A 2DSGA 2Z6RA 2P5FA 2NPNA 2EL1A 2PCMA 3T0GA 2OWUA 4H4EA 3F7TA 3SZLA 2EH5A 2E8HA 2YBOA 3KELA 3ND1A 3LMMA 2EJKA 2DV4A 2EMUA 2EMRA 1PJTA 1VHVA 2DXVA 2QBUA 2EL3A 2EK4A 3KE8A 1WDEA 2EKAA 2EL2A 3KEFA 2EJJA 2YBQA 3SZUA 2KYYA 2P9DA 2E08A 3NDCA 1V9AA 2PCIA 1VA0A 2EK7A 3HH1A 3ZGLA 3NEIA 4EB3A 4E16A 2EK2A 2EN5A 2HUQA 2ZVCA 2E8QA 2P2XA 2EH2A 4MUXA
chains in the Genus database with same CATH topology
2P6LA 2HR8A 2EGLA 3KEMA 3FFYA 3KWPA 3TIXB 5HW4A 2E07A 1VCEA 1PJQA 2DSIA 2EHCA 2CBFA 2E0NA 3UV6A 2PB4A 3DNFA 4MV0A 2PB6A 4MV5A 2E17A 2HUVA 2E4RA 2OWFA 2EK3A 2ED5A 2HUTA 2EEQA 2EJZA 4MUYA 3T0FA 3ZGNA 2E0KA 2P6DA 2ZVBA 3KE9A 2E8RA 2PCKA 4H4DA 1CBFA 2DXXA 2ENIA 2EH4A 2P6IA 1PJSA 2OWKA 2PCHA 2E16A 2OWVA 2P5CA 2EGBA 2DXWA 3SZOA 4H4CA 3UTDA 2BB3A 2EHLA 1WYZA 1S4DA 2DV7A 3UV3A 2DSHA 3I4TA 2PCGA 2ED3A 3UTCA 2DV3A 2E15A 4N7BA 2OWGA 2ELDA 2ELEA 1VE2A 2E8SA 3FQ6A 3NUTA 2P6KA 2DEKA 3URKA 2E7RA 2E4NA 2PB5A 2DV5A 2HUXA 3UWMA 2PCAA 2EGSA 1WNGA 2EL0A 3UV7A 2DSGA 2Z6RA 2P5FA 2NPNA 2EL1A 2PCMA 3T0GA 2OWUA 4H4EA 3F7TA 3SZLA 2EH5A 2E8HA 2YBOA 3KELA 3ND1A 3LMMA 2EJKA 2DV4A 2EMUA 2EMRA 1PJTA 1VHVA 2DXVA 2QBUA 2EL3A 2EK4A 3KE8A 1WDEA 2EKAA 2EL2A 3KEFA 2EJJA 2YBQA 3SZUA 2KYYA 2P9DA 2E08A 3NDCA 1V9AA 2PCIA 1VA0A 2EK7A 3HH1A 3ZGLA 3NEIA 4EB3A 4E16A 2EK2A 2EN5A 2HUQA 2ZVCA 2E8QA 2P2XA 2EH2A 4MUXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P6L A;  2HR8 A;  2EGL A;  3FFY A;  3KWP A;  5HW4 A;  2E07 A;  1VCE A;  1PJQ A;  2DSI A;  2EHC A;  2CBF A;  2E0N A;  2PB4 A;  2PB6 A;  2E17 A;  2HUV A;  2E4R A;  2OWF A;  2EK3 A;  2ED5 A;  2HUT A;  2EEQ A;  2EJZ A;  2E0K A;  2P6D A;  2ZVB A;  2E8R A;  2PCK A;  1CBF A;  2DXX A;  2ENI A;  2EH4 A;  2P6I A;  1PJS A;  2OWK A;  2PCH A;  2E16 A;  2OWV A;  2P5C A;  2EGB A;  2DXW A;  2BB3 A;  2EHL A;  1WYZ A;  1S4D A;  2DV7 A;  2DSH A;  3I4T A;  2PCG A;  2ED3 A;  2DV3 A;  2E15 A;  2OWG A;  2ELD A;  2ELE A;  1VE2 A;  2E8S A;  3FQ6 A;  3NUT A;  2P6K A;  2DEK A;  2E7R A;  2E4N A;  2PB5 A;  2DV5 A;  2HUX A;  2PCA A;  2EGS A;  1WNG A;  2EL0 A;  2DSG A;  2Z6R A;  2P5F A;  2NPN A;  2EL1 A;  2PCM A;  2OWU A;  2EH5 A;  2E8H A;  2YBO A;  3ND1 A;  2EJK A;  2DV4 A;  2EMU A;  2EMR A;  1PJT A;  1VHV A;  2DXV A;  2QBU A;  2EL3 A;  2EK4 A;  1WDE A;  2EKA A;  2EL2 A;  2EJJ A;  2YBQ A;  2P9D A;  2E08 A;  3NDC A;  1V9A A;  2PCI A;  1VA0 A;  2EK7 A;  3HH1 A;  3NEI A;  4E16 A;  2EK2 A;  2EN5 A;  2HUQ A;  2ZVC A;  2E8Q A;  2P2X A;  2EH2 A; 
#chains in the Genus database with same CATH topology
 2P6L A;  2HR8 A;  2EGL A;  3KEM A;  3FFY A;  3KWP A;  3TIX B;  5HW4 A;  2E07 A;  1VCE A;  1PJQ A;  2DSI A;  2EHC A;  2CBF A;  2E0N A;  3UV6 A;  2PB4 A;  3DNF A;  4MV0 A;  2PB6 A;  4MV5 A;  2E17 A;  2HUV A;  2E4R A;  2OWF A;  2EK3 A;  2ED5 A;  2HUT A;  2EEQ A;  2EJZ A;  4MUY A;  3T0F A;  3ZGN A;  2E0K A;  2P6D A;  2ZVB A;  3KE9 A;  2E8R A;  2PCK A;  4H4D A;  1CBF A;  2DXX A;  2ENI A;  2EH4 A;  2P6I A;  1PJS A;  2OWK A;  2PCH A;  2E16 A;  2OWV A;  2P5C A;  2EGB A;  2DXW A;  3SZO A;  4H4C A;  3UTD A;  2BB3 A;  2EHL A;  1WYZ A;  1S4D A;  2DV7 A;  3UV3 A;  2DSH A;  3I4T A;  2PCG A;  2ED3 A;  3UTC A;  2DV3 A;  2E15 A;  4N7B A;  2OWG A;  2ELD A;  2ELE A;  1VE2 A;  2E8S A;  3FQ6 A;  3NUT A;  2P6K A;  2DEK A;  3URK A;  2E7R A;  2E4N A;  2PB5 A;  2DV5 A;  2HUX A;  3UWM A;  2PCA A;  2EGS A;  1WNG A;  2EL0 A;  3UV7 A;  2DSG A;  2Z6R A;  2P5F A;  2NPN A;  2EL1 A;  2PCM A;  3T0G A;  2OWU A;  4H4E A;  3F7T A;  3SZL A;  2EH5 A;  2E8H A;  2YBO A;  3KEL A;  3ND1 A;  3LMM A;  2EJK A;  2DV4 A;  2EMU A;  2EMR A;  1PJT A;  1VHV A;  2DXV A;  2QBU A;  2EL3 A;  2EK4 A;  3KE8 A;  1WDE A;  2EKA A;  2EL2 A;  3KEF A;  2EJJ A;  2YBQ A;  3SZU A;  2KYY A;  2P9D A;  2E08 A;  3NDC A;  1V9A A;  2PCI A;  1VA0 A;  2EK7 A;  3HH1 A;  3ZGL A;  3NEI A;  4EB3 A;  4E16 A;  2EK2 A;  2EN5 A;  2HUQ A;  2ZVC A;  2E8Q A;  2P2X A;  2EH2 A;  4MUX A; 
#chains in the Genus database with same CATH homology
 2P6L A;  2HR8 A;  2EGL A;  3KEM A;  3FFY A;  3KWP A;  3TIX B;  5HW4 A;  2E07 A;  1VCE A;  1PJQ A;  2DSI A;  2EHC A;  2CBF A;  2E0N A;  3UV6 A;  2PB4 A;  3DNF A;  4MV0 A;  2PB6 A;  4MV5 A;  2E17 A;  2HUV A;  2E4R A;  2OWF A;  2EK3 A;  2ED5 A;  2HUT A;  2EEQ A;  2EJZ A;  4MUY A;  3T0F A;  3ZGN A;  2E0K A;  2P6D A;  2ZVB A;  3KE9 A;  2E8R A;  2PCK A;  4H4D A;  1CBF A;  2DXX A;  2ENI A;  2EH4 A;  2P6I A;  1PJS A;  2OWK A;  2PCH A;  2E16 A;  2OWV A;  2P5C A;  2EGB A;  2DXW A;  3SZO A;  4H4C A;  3UTD A;  2BB3 A;  2EHL A;  1WYZ A;  1S4D A;  2DV7 A;  3UV3 A;  2DSH A;  3I4T A;  2PCG A;  2ED3 A;  3UTC A;  2DV3 A;  2E15 A;  4N7B A;  2OWG A;  2ELD A;  2ELE A;  1VE2 A;  2E8S A;  3FQ6 A;  3NUT A;  2P6K A;  2DEK A;  3URK A;  2E7R A;  2E4N A;  2PB5 A;  2DV5 A;  2HUX A;  3UWM A;  2PCA A;  2EGS A;  1WNG A;  2EL0 A;  3UV7 A;  2DSG A;  2Z6R A;  2P5F A;  2NPN A;  2EL1 A;  2PCM A;  3T0G A;  2OWU A;  4H4E A;  3F7T A;  3SZL A;  2EH5 A;  2E8H A;  2YBO A;  3KEL A;  3ND1 A;  3LMM A;  2EJK A;  2DV4 A;  2EMU A;  2EMR A;  1PJT A;  1VHV A;  2DXV A;  2QBU A;  2EL3 A;  2EK4 A;  3KE8 A;  1WDE A;  2EKA A;  2EL2 A;  3KEF A;  2EJJ A;  2YBQ A;  3SZU A;  2KYY A;  2P9D A;  2E08 A;  3NDC A;  1V9A A;  2PCI A;  1VA0 A;  2EK7 A;  3HH1 A;  3ZGL A;  3NEI A;  4EB3 A;  4E16 A;  2EK2 A;  2EN5 A;  2HUQ A;  2ZVC A;  2E8Q A;  2P2X A;  2EH2 A;  4MUX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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