2EL2A

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l185m)
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELMLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L185M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 77
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2el2A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2el2A01
3ND1A 2DXXA 3I4TA 2EGBA 2PCAA 2EGLA 1PJTA 2ENIA 2E8HA 1VA0A 2EH2A 1VHVA 1PJSA 2PB5A 2DSHA 2HUXA 2DV3A 1WYZA 2PB4A 2EN5A 2ED5A 2EL1A 2EL3A 2E4RA 2PB6A 2EJKA 2EGSA 2DXWA 2E8SA 2EJJA 1S4DA 2E08A 2EKAA 2DV7A 2QBUA 3HH1A 2DV4A 2OWUA 2ZVBA 3NUTA 2PCKA 2P6KA 1PJQA 2E16A 2DXVA 2YBOA 2E0NA 2DSGA 2EK3A 2EH5A 2EL0A 2E4NA 2EK4A 2OWGA 2EMUA 3NDCA 2YBQA 2EHCA 2P6IA 2EMRA 2HR8A 2HUTA 2EHLA 2PCMA 2E15A 1WNGA 2E7RA 2DSIA 2EK2A 2OWVA 2Z6RA 3FQ6A 2EL2A 2E0KA 2HUVA 2E8RA 2DV5A 5HW4A 2EJZA 2ELDA 2OWKA 2PCHA 2HUQA 2BB3A 2ELEA 2ED3A 2P6DA 1WDEA 2EEQA 2P5CA 2CBFA 2OWFA 2P9DA 2P5FA 2E17A 1VE2A 4E16A 2EK7A 2ZVCA 3NEIA 2DEKA 3KWPA 3FFYA 2P2XA 2E8QA 2PCGA 2P6LA 2E07A 1V9AA 1VCEA 2NPNA 2PCIA 1CBFA 2EH4A
chains in the Genus database with same CATH superfamily
3ND1A 2DXXA 3I4TA 3F7TA 2EGBA 2PCAA 2EGLA 1PJTA 3T0FA 3UV6A 2ENIA 2E8HA 1VA0A 2EH2A 1VHVA 1PJSA 3SZLA 2PB5A 2DSHA 2HUXA 2DV3A 1WYZA 3LMMA 2PB4A 2EN5A 4EB3A 2ED5A 2EL1A 3UV7A 2EL3A 4MUYA 2E4RA 2PB6A 2EJKA 2EGSA 2DXWA 2E8SA 2EJJA 1S4DA 3URKA 2E08A 2EKAA 2DV7A 2QBUA 3HH1A 2DV4A 4H4CA 2OWUA 2ZVBA 3UTCA 3NUTA 2PCKA 3KEMA 2P6KA 2KYYA 1PJQA 2E16A 2DXVA 2YBOA 2E0NA 2DSGA 2EK3A 2EH5A 2EL0A 2E4NA 2EK4A 3SZOA 3UWMA 2OWGA 2EMUA 3NDCA 3ZGNA 2YBQA 2EHCA 2P6IA 4MUXA 2EMRA 4H4DA 2HR8A 2HUTA 2EHLA 3T0GA 2PCMA 2E15A 1WNGA 2E7RA 3UTDA 2DSIA 2EK2A 2OWVA 2Z6RA 3FQ6A 2EL2A 2E0KA 2HUVA 2E8RA 3KE8A 2DV5A 5HW4A 3TIXB 2EJZA 2ELDA 3KELA 4N7BA 2OWKA 3UV3A 2PCHA 2HUQA 2BB3A 2ELEA 2ED3A 3DNFA 2P6DA 1WDEA 4H4EA 2EEQA 3KEFA 2P5CA 2CBFA 2OWFA 2P9DA 2P5FA 2E17A 1VE2A 4E16A 3KE9A 2EK7A 2ZVCA 3NEIA 3ZGLA 2DEKA 3KWPA 4MV5A 3FFYA 2P2XA 2E8QA 3SZUA 2PCGA 2P6LA 2E07A 1V9AA 1VCEA 2NPNA 2PCIA 1CBFA 2EH4A 4MV0A
chains in the Genus database with same CATH topology
3ND1A 2DXXA 3I4TA 3F7TA 2EGBA 2PCAA 2EGLA 1PJTA 3T0FA 3UV6A 2ENIA 2E8HA 1VA0A 2EH2A 1VHVA 1PJSA 3SZLA 2PB5A 2DSHA 2HUXA 2DV3A 1WYZA 3LMMA 2PB4A 2EN5A 4EB3A 2ED5A 2EL1A 3UV7A 2EL3A 4MUYA 2E4RA 2PB6A 2EJKA 2EGSA 2DXWA 2E8SA 2EJJA 1S4DA 3URKA 2E08A 2EKAA 2DV7A 2QBUA 3HH1A 2DV4A 4H4CA 2OWUA 2ZVBA 3UTCA 3NUTA 2PCKA 3KEMA 2P6KA 2KYYA 1PJQA 2E16A 2DXVA 2YBOA 2E0NA 2DSGA 2EK3A 2EH5A 2EL0A 2E4NA 2EK4A 3SZOA 3UWMA 2OWGA 2EMUA 3NDCA 3ZGNA 2YBQA 2EHCA 2P6IA 4MUXA 2EMRA 4H4DA 2HR8A 2HUTA 2EHLA 3T0GA 2PCMA 2E15A 1WNGA 2E7RA 3UTDA 2DSIA 2EK2A 2OWVA 2Z6RA 3FQ6A 2EL2A 2E0KA 2HUVA 2E8RA 3KE8A 2DV5A 5HW4A 3TIXB 2EJZA 2ELDA 3KELA 4N7BA 2OWKA 3UV3A 2PCHA 2HUQA 2BB3A 2ELEA 2ED3A 3DNFA 2P6DA 1WDEA 4H4EA 2EEQA 3KEFA 2P5CA 2CBFA 2OWFA 2P9DA 2P5FA 2E17A 1VE2A 4E16A 3KE9A 2EK7A 2ZVCA 3NEIA 3ZGLA 2DEKA 3KWPA 4MV5A 3FFYA 2P2XA 2E8QA 3SZUA 2PCGA 2P6LA 2E07A 1V9AA 1VCEA 2NPNA 2PCIA 1CBFA 2EH4A 4MV0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ND1 A;  2DXX A;  3I4T A;  2EGB A;  2PCA A;  2EGL A;  1PJT A;  2ENI A;  2E8H A;  1VA0 A;  2EH2 A;  1VHV A;  1PJS A;  2PB5 A;  2DSH A;  2HUX A;  2DV3 A;  1WYZ A;  2PB4 A;  2EN5 A;  2ED5 A;  2EL1 A;  2EL3 A;  2E4R A;  2PB6 A;  2EJK A;  2EGS A;  2DXW A;  2E8S A;  2EJJ A;  1S4D A;  2E08 A;  2EKA A;  2DV7 A;  2QBU A;  3HH1 A;  2DV4 A;  2OWU A;  2ZVB A;  3NUT A;  2PCK A;  2P6K A;  1PJQ A;  2E16 A;  2DXV A;  2YBO A;  2E0N A;  2DSG A;  2EK3 A;  2EH5 A;  2EL0 A;  2E4N A;  2EK4 A;  2OWG A;  2EMU A;  3NDC A;  2YBQ A;  2EHC A;  2P6I A;  2EMR A;  2HR8 A;  2HUT A;  2EHL A;  2PCM A;  2E15 A;  1WNG A;  2E7R A;  2DSI A;  2EK2 A;  2OWV A;  2Z6R A;  3FQ6 A;  2EL2 A;  2E0K A;  2HUV A;  2E8R A;  2DV5 A;  5HW4 A;  2EJZ A;  2ELD A;  2OWK A;  2PCH A;  2HUQ A;  2BB3 A;  2ELE A;  2ED3 A;  2P6D A;  1WDE A;  2EEQ A;  2P5C A;  2CBF A;  2OWF A;  2P9D A;  2P5F A;  2E17 A;  1VE2 A;  4E16 A;  2EK7 A;  2ZVC A;  3NEI A;  2DEK A;  3KWP A;  3FFY A;  2P2X A;  2E8Q A;  2PCG A;  2P6L A;  2E07 A;  1V9A A;  1VCE A;  2NPN A;  2PCI A;  1CBF A;  2EH4 A; 
#chains in the Genus database with same CATH topology
 3ND1 A;  2DXX A;  3I4T A;  3F7T A;  2EGB A;  2PCA A;  2EGL A;  1PJT A;  3T0F A;  3UV6 A;  2ENI A;  2E8H A;  1VA0 A;  2EH2 A;  1VHV A;  1PJS A;  3SZL A;  2PB5 A;  2DSH A;  2HUX A;  2DV3 A;  1WYZ A;  3LMM A;  2PB4 A;  2EN5 A;  4EB3 A;  2ED5 A;  2EL1 A;  3UV7 A;  2EL3 A;  4MUY A;  2E4R A;  2PB6 A;  2EJK A;  2EGS A;  2DXW A;  2E8S A;  2EJJ A;  1S4D A;  3URK A;  2E08 A;  2EKA A;  2DV7 A;  2QBU A;  3HH1 A;  2DV4 A;  4H4C A;  2OWU A;  2ZVB A;  3UTC A;  3NUT A;  2PCK A;  3KEM A;  2P6K A;  2KYY A;  1PJQ A;  2E16 A;  2DXV A;  2YBO A;  2E0N A;  2DSG A;  2EK3 A;  2EH5 A;  2EL0 A;  2E4N A;  2EK4 A;  3SZO A;  3UWM A;  2OWG A;  2EMU A;  3NDC A;  3ZGN A;  2YBQ A;  2EHC A;  2P6I A;  4MUX A;  2EMR A;  4H4D A;  2HR8 A;  2HUT A;  2EHL A;  3T0G A;  2PCM A;  2E15 A;  1WNG A;  2E7R A;  3UTD A;  2DSI A;  2EK2 A;  2OWV A;  2Z6R A;  3FQ6 A;  2EL2 A;  2E0K A;  2HUV A;  2E8R A;  3KE8 A;  2DV5 A;  5HW4 A;  3TIX B;  2EJZ A;  2ELD A;  3KEL A;  4N7B A;  2OWK A;  3UV3 A;  2PCH A;  2HUQ A;  2BB3 A;  2ELE A;  2ED3 A;  3DNF A;  2P6D A;  1WDE A;  4H4E A;  2EEQ A;  3KEF A;  2P5C A;  2CBF A;  2OWF A;  2P9D A;  2P5F A;  2E17 A;  1VE2 A;  4E16 A;  3KE9 A;  2EK7 A;  2ZVC A;  3NEI A;  3ZGL A;  2DEK A;  3KWP A;  4MV5 A;  3FFY A;  2P2X A;  2E8Q A;  3SZU A;  2PCG A;  2P6L A;  2E07 A;  1V9A A;  1VCE A;  2NPN A;  2PCI A;  1CBF A;  2EH4 A;  4MV0 A; 
#chains in the Genus database with same CATH homology
 3ND1 A;  2DXX A;  3I4T A;  3F7T A;  2EGB A;  2PCA A;  2EGL A;  1PJT A;  3T0F A;  3UV6 A;  2ENI A;  2E8H A;  1VA0 A;  2EH2 A;  1VHV A;  1PJS A;  3SZL A;  2PB5 A;  2DSH A;  2HUX A;  2DV3 A;  1WYZ A;  3LMM A;  2PB4 A;  2EN5 A;  4EB3 A;  2ED5 A;  2EL1 A;  3UV7 A;  2EL3 A;  4MUY A;  2E4R A;  2PB6 A;  2EJK A;  2EGS A;  2DXW A;  2E8S A;  2EJJ A;  1S4D A;  3URK A;  2E08 A;  2EKA A;  2DV7 A;  2QBU A;  3HH1 A;  2DV4 A;  4H4C A;  2OWU A;  2ZVB A;  3UTC A;  3NUT A;  2PCK A;  3KEM A;  2P6K A;  2KYY A;  1PJQ A;  2E16 A;  2DXV A;  2YBO A;  2E0N A;  2DSG A;  2EK3 A;  2EH5 A;  2EL0 A;  2E4N A;  2EK4 A;  3SZO A;  3UWM A;  2OWG A;  2EMU A;  3NDC A;  3ZGN A;  2YBQ A;  2EHC A;  2P6I A;  4MUX A;  2EMR A;  4H4D A;  2HR8 A;  2HUT A;  2EHL A;  3T0G A;  2PCM A;  2E15 A;  1WNG A;  2E7R A;  3UTD A;  2DSI A;  2EK2 A;  2OWV A;  2Z6R A;  3FQ6 A;  2EL2 A;  2E0K A;  2HUV A;  2E8R A;  3KE8 A;  2DV5 A;  5HW4 A;  3TIX B;  2EJZ A;  2ELD A;  3KEL A;  4N7B A;  2OWK A;  3UV3 A;  2PCH A;  2HUQ A;  2BB3 A;  2ELE A;  2ED3 A;  3DNF A;  2P6D A;  1WDE A;  4H4E A;  2EEQ A;  3KEF A;  2P5C A;  2CBF A;  2OWF A;  2P9D A;  2P5F A;  2E17 A;  1VE2 A;  4E16 A;  3KE9 A;  2EK7 A;  2ZVC A;  3NEI A;  3ZGL A;  2DEK A;  3KWP A;  4MV5 A;  3FFY A;  2P2X A;  2E8Q A;  3SZU A;  2PCG A;  2P6L A;  2E07 A;  1V9A A;  1VCE A;  2NPN A;  2PCI A;  1CBF A;  2EH4 A;  4MV0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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