2EL2A

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l185m)
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELMLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L185M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 77
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2el2A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2el2A01
2DV7A 2DV3A 2ZVCA 2HUXA 2PCAA 1S4DA 2OWKA 1VA0A 3KWPA 2E08A 4E16A 2EL3A 5HW4A 2QBUA 2HUQA 2E16A 1VCEA 2E17A 2DV5A 2PCMA 2PCGA 2P6KA 2DSIA 3HH1A 2E0KA 1PJTA 2DXVA 2EHCA 2E07A 2OWGA 2P5FA 1PJQA 2PCKA 1WDEA 2EGBA 2EHLA 2ENIA 1CBFA 2EH2A 2ED5A 2BB3A 2EK2A 2EK7A 2EL0A 2HUTA 2P6LA 2EK4A 2DSHA 2YBQA 1V9AA 2EGLA 2EGSA 1VE2A 2E8HA 1WYZA 1WNGA 2E7RA 2EL1A 2DXXA 2E0NA 2EH4A 2EJJA 2EMUA 2PCHA 1VHVA 2EEQA 2DEKA 2EKAA 2EN5A 2PB5A 3NUTA 2OWUA 2P2XA 2DXWA 2DSGA 2NPNA 2DV4A 3ND1A 2P9DA 2PB6A 2YBOA 2P6DA 2OWFA 2E15A 3I4TA 3FQ6A 3FFYA 2E4NA 2E8RA 2ZVBA 2ELEA 2ED3A 2EJZA 2Z6RA 2EK3A 2EH5A 2P6IA 2CBFA 2E8QA 2PCIA 2OWVA 2P5CA 3NDCA 2EL2A 2HR8A 2E8SA 2HUVA 1PJSA 2EJKA 2ELDA 3NEIA 2PB4A 2EMRA 2E4RA
chains in the Genus database with same CATH superfamily
2DV7A 2DV3A 2ZVCA 2HUXA 3SZUA 3KE8A 2PCAA 1S4DA 2OWKA 1VA0A 3KWPA 2E08A 4E16A 2EL3A 5HW4A 2QBUA 2HUQA 2E16A 3UV7A 1VCEA 2E17A 2DV5A 2PCMA 2PCGA 4EB3A 2P6KA 2DSIA 3HH1A 2E0KA 1PJTA 2DXVA 2EHCA 2E07A 2OWGA 2P5FA 1PJQA 2PCKA 3DNFA 1WDEA 2EGBA 4H4DA 2EHLA 2ENIA 1CBFA 2EH2A 3URKA 2ED5A 2BB3A 3T0GA 3KEMA 4H4EA 2EK2A 2EK7A 2EL0A 2HUTA 2P6LA 2EK4A 2DSHA 2YBQA 1V9AA 2EGLA 3UV6A 2EGSA 1VE2A 2E8HA 1WYZA 1WNGA 3SZLA 2E7RA 2EL1A 4MV0A 2DXXA 2E0NA 2EH4A 2EJJA 2EMUA 2PCHA 1VHVA 2EEQA 2DEKA 4MUXA 3UTCA 2EKAA 2EN5A 2PB5A 3NUTA 2OWUA 2P2XA 2DXWA 2DSGA 3UTDA 2NPNA 3UWMA 2DV4A 2KYYA 3ND1A 3F7TA 2P9DA 2PB6A 2YBOA 2P6DA 2OWFA 2E15A 3I4TA 3KEFA 3FQ6A 3UV3A 3FFYA 3ZGNA 2E4NA 2E8RA 4N7BA 2ZVBA 4MV5A 3SZOA 2ELEA 4H4CA 2ED3A 3ZGLA 3LMMA 3KE9A 2EJZA 2Z6RA 2EK3A 2EH5A 2P6IA 2CBFA 2E8QA 2PCIA 2OWVA 2P5CA 3KELA 3NDCA 3T0FA 4MUYA 2EL2A 2HR8A 2E8SA 2HUVA 1PJSA 2EJKA 3TIXB 2ELDA 3NEIA 2PB4A 2EMRA 2E4RA
chains in the Genus database with same CATH topology
2DV7A 2DV3A 2ZVCA 2HUXA 3SZUA 3KE8A 2PCAA 1S4DA 2OWKA 1VA0A 3KWPA 2E08A 4E16A 2EL3A 5HW4A 2QBUA 2HUQA 2E16A 3UV7A 1VCEA 2E17A 2DV5A 2PCMA 2PCGA 4EB3A 2P6KA 2DSIA 3HH1A 2E0KA 1PJTA 2DXVA 2EHCA 2E07A 2OWGA 2P5FA 1PJQA 2PCKA 3DNFA 1WDEA 2EGBA 4H4DA 2EHLA 2ENIA 1CBFA 2EH2A 3URKA 2ED5A 2BB3A 3T0GA 3KEMA 4H4EA 2EK2A 2EK7A 2EL0A 2HUTA 2P6LA 2EK4A 2DSHA 2YBQA 1V9AA 2EGLA 3UV6A 2EGSA 1VE2A 2E8HA 1WYZA 1WNGA 3SZLA 2E7RA 2EL1A 4MV0A 2DXXA 2E0NA 2EH4A 2EJJA 2EMUA 2PCHA 1VHVA 2EEQA 2DEKA 4MUXA 3UTCA 2EKAA 2EN5A 2PB5A 3NUTA 2OWUA 2P2XA 2DXWA 2DSGA 3UTDA 2NPNA 3UWMA 2DV4A 2KYYA 3ND1A 3F7TA 2P9DA 2PB6A 2YBOA 2P6DA 2OWFA 2E15A 3I4TA 3KEFA 3FQ6A 3UV3A 3FFYA 3ZGNA 2E4NA 2E8RA 4N7BA 2ZVBA 4MV5A 3SZOA 2ELEA 4H4CA 2ED3A 3ZGLA 3LMMA 3KE9A 2EJZA 2Z6RA 2EK3A 2EH5A 2P6IA 2CBFA 2E8QA 2PCIA 2OWVA 2P5CA 3KELA 3NDCA 3T0FA 4MUYA 2EL2A 2HR8A 2E8SA 2HUVA 1PJSA 2EJKA 3TIXB 2ELDA 3NEIA 2PB4A 2EMRA 2E4RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DV7 A;  2DV3 A;  2ZVC A;  2HUX A;  2PCA A;  1S4D A;  2OWK A;  1VA0 A;  3KWP A;  2E08 A;  4E16 A;  2EL3 A;  5HW4 A;  2QBU A;  2HUQ A;  2E16 A;  1VCE A;  2E17 A;  2DV5 A;  2PCM A;  2PCG A;  2P6K A;  2DSI A;  3HH1 A;  2E0K A;  1PJT A;  2DXV A;  2EHC A;  2E07 A;  2OWG A;  2P5F A;  1PJQ A;  2PCK A;  1WDE A;  2EGB A;  2EHL A;  2ENI A;  1CBF A;  2EH2 A;  2ED5 A;  2BB3 A;  2EK2 A;  2EK7 A;  2EL0 A;  2HUT A;  2P6L A;  2EK4 A;  2DSH A;  2YBQ A;  1V9A A;  2EGL A;  2EGS A;  1VE2 A;  2E8H A;  1WYZ A;  1WNG A;  2E7R A;  2EL1 A;  2DXX A;  2E0N A;  2EH4 A;  2EJJ A;  2EMU A;  2PCH A;  1VHV A;  2EEQ A;  2DEK A;  2EKA A;  2EN5 A;  2PB5 A;  3NUT A;  2OWU A;  2P2X A;  2DXW A;  2DSG A;  2NPN A;  2DV4 A;  3ND1 A;  2P9D A;  2PB6 A;  2YBO A;  2P6D A;  2OWF A;  2E15 A;  3I4T A;  3FQ6 A;  3FFY A;  2E4N A;  2E8R A;  2ZVB A;  2ELE A;  2ED3 A;  2EJZ A;  2Z6R A;  2EK3 A;  2EH5 A;  2P6I A;  2CBF A;  2E8Q A;  2PCI A;  2OWV A;  2P5C A;  3NDC A;  2EL2 A;  2HR8 A;  2E8S A;  2HUV A;  1PJS A;  2EJK A;  2ELD A;  3NEI A;  2PB4 A;  2EMR A;  2E4R A; 
#chains in the Genus database with same CATH topology
 2DV7 A;  2DV3 A;  2ZVC A;  2HUX A;  3SZU A;  3KE8 A;  2PCA A;  1S4D A;  2OWK A;  1VA0 A;  3KWP A;  2E08 A;  4E16 A;  2EL3 A;  5HW4 A;  2QBU A;  2HUQ A;  2E16 A;  3UV7 A;  1VCE A;  2E17 A;  2DV5 A;  2PCM A;  2PCG A;  4EB3 A;  2P6K A;  2DSI A;  3HH1 A;  2E0K A;  1PJT A;  2DXV A;  2EHC A;  2E07 A;  2OWG A;  2P5F A;  1PJQ A;  2PCK A;  3DNF A;  1WDE A;  2EGB A;  4H4D A;  2EHL A;  2ENI A;  1CBF A;  2EH2 A;  3URK A;  2ED5 A;  2BB3 A;  3T0G A;  3KEM A;  4H4E A;  2EK2 A;  2EK7 A;  2EL0 A;  2HUT A;  2P6L A;  2EK4 A;  2DSH A;  2YBQ A;  1V9A A;  2EGL A;  3UV6 A;  2EGS A;  1VE2 A;  2E8H A;  1WYZ A;  1WNG A;  3SZL A;  2E7R A;  2EL1 A;  4MV0 A;  2DXX A;  2E0N A;  2EH4 A;  2EJJ A;  2EMU A;  2PCH A;  1VHV A;  2EEQ A;  2DEK A;  4MUX A;  3UTC A;  2EKA A;  2EN5 A;  2PB5 A;  3NUT A;  2OWU A;  2P2X A;  2DXW A;  2DSG A;  3UTD A;  2NPN A;  3UWM A;  2DV4 A;  2KYY A;  3ND1 A;  3F7T A;  2P9D A;  2PB6 A;  2YBO A;  2P6D A;  2OWF A;  2E15 A;  3I4T A;  3KEF A;  3FQ6 A;  3UV3 A;  3FFY A;  3ZGN A;  2E4N A;  2E8R A;  4N7B A;  2ZVB A;  4MV5 A;  3SZO A;  2ELE A;  4H4C A;  2ED3 A;  3ZGL A;  3LMM A;  3KE9 A;  2EJZ A;  2Z6R A;  2EK3 A;  2EH5 A;  2P6I A;  2CBF A;  2E8Q A;  2PCI A;  2OWV A;  2P5C A;  3KEL A;  3NDC A;  3T0F A;  4MUY A;  2EL2 A;  2HR8 A;  2E8S A;  2HUV A;  1PJS A;  2EJK A;  3TIX B;  2ELD A;  3NEI A;  2PB4 A;  2EMR A;  2E4R A; 
#chains in the Genus database with same CATH homology
 2DV7 A;  2DV3 A;  2ZVC A;  2HUX A;  3SZU A;  3KE8 A;  2PCA A;  1S4D A;  2OWK A;  1VA0 A;  3KWP A;  2E08 A;  4E16 A;  2EL3 A;  5HW4 A;  2QBU A;  2HUQ A;  2E16 A;  3UV7 A;  1VCE A;  2E17 A;  2DV5 A;  2PCM A;  2PCG A;  4EB3 A;  2P6K A;  2DSI A;  3HH1 A;  2E0K A;  1PJT A;  2DXV A;  2EHC A;  2E07 A;  2OWG A;  2P5F A;  1PJQ A;  2PCK A;  3DNF A;  1WDE A;  2EGB A;  4H4D A;  2EHL A;  2ENI A;  1CBF A;  2EH2 A;  3URK A;  2ED5 A;  2BB3 A;  3T0G A;  3KEM A;  4H4E A;  2EK2 A;  2EK7 A;  2EL0 A;  2HUT A;  2P6L A;  2EK4 A;  2DSH A;  2YBQ A;  1V9A A;  2EGL A;  3UV6 A;  2EGS A;  1VE2 A;  2E8H A;  1WYZ A;  1WNG A;  3SZL A;  2E7R A;  2EL1 A;  4MV0 A;  2DXX A;  2E0N A;  2EH4 A;  2EJJ A;  2EMU A;  2PCH A;  1VHV A;  2EEQ A;  2DEK A;  4MUX A;  3UTC A;  2EKA A;  2EN5 A;  2PB5 A;  3NUT A;  2OWU A;  2P2X A;  2DXW A;  2DSG A;  3UTD A;  2NPN A;  3UWM A;  2DV4 A;  2KYY A;  3ND1 A;  3F7T A;  2P9D A;  2PB6 A;  2YBO A;  2P6D A;  2OWF A;  2E15 A;  3I4T A;  3KEF A;  3FQ6 A;  3UV3 A;  3FFY A;  3ZGN A;  2E4N A;  2E8R A;  4N7B A;  2ZVB A;  4MV5 A;  3SZO A;  2ELE A;  4H4C A;  2ED3 A;  3ZGL A;  3LMM A;  3KE9 A;  2EJZ A;  2Z6R A;  2EK3 A;  2EH5 A;  2P6I A;  2CBF A;  2E8Q A;  2PCI A;  2OWV A;  2P5C A;  3KEL A;  3NDC A;  3T0F A;  4MUY A;  2EL2 A;  2HR8 A;  2E8S A;  2HUV A;  1PJS A;  2EJK A;  3TIX B;  2ELD A;  3NEI A;  2PB4 A;  2EMR A;  2E4R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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