2EL3A

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l242m)
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKMHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L242M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2el3A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2el3A01
2E17A 1V9AA 1S4DA 2OWGA 1WYZA 2YBOA 2ELEA 2ENIA 2ZVCA 2EL1A 1WNGA 2EKAA 2EK3A 2EH4A 2EHCA 3NDCA 2DV7A 2EGLA 2HUXA 3KWPA 2DV3A 5HW4A 2EMRA 2EL2A 1VA0A 4E16A 2EJJA 2E7RA 2P5CA 1PJSA 2HUVA 2HUTA 2EK2A 2DSIA 2OWVA 3FQ6A 3HH1A 2EL0A 2Z6RA 2CBFA 1CBFA 2E4NA 2EMUA 2EJKA 2DXVA 3I4TA 2E8QA 2ELDA 1VE2A 2DSHA 2P6DA 2P6IA 2E8RA 2EH5A 2E16A 2EL3A 2DSGA 2YBQA 2P6KA 2NPNA 2PCIA 2EN5A 2PCMA 2PCKA 1PJTA 2E08A 3NEIA 2PCGA 1PJQA 2E4RA 1WDEA 3FFYA 2OWFA 2DXWA 2EGBA 2PCAA 2HR8A 2P2XA 2EK7A 2PB6A 2EJZA 2E0NA 1VCEA 2DV5A 3ND1A 2P6LA 2E8SA 2DEKA 2EEQA 2QBUA 2E8HA 2DV4A 2EGSA 2EK4A 1VHVA 2EHLA 2ED5A 2PB4A 2EH2A 2OWKA 2PCHA 2ZVBA 2OWUA 2E07A 2E0KA 3NUTA 2E15A 2BB3A 2PB5A 2P9DA 2ED3A 2P5FA 2HUQA 2DXXA
chains in the Genus database with same CATH superfamily
2E17A 1V9AA 1S4DA 2OWGA 1WYZA 3ZGLA 2YBOA 2ELEA 2ENIA 2ZVCA 2EL1A 1WNGA 2EKAA 2EK3A 2EH4A 2EHCA 3NDCA 2DV7A 2EGLA 2HUXA 3KWPA 2DV3A 4H4DA 5HW4A 2EMRA 2EL2A 1VA0A 4E16A 2EJJA 3KEFA 3KEMA 2E7RA 2P5CA 1PJSA 2HUVA 2HUTA 2EK2A 3DNFA 2DSIA 2OWVA 3FQ6A 3HH1A 2EL0A 2Z6RA 3SZOA 2CBFA 1CBFA 3SZLA 2E4NA 2EMUA 2EJKA 2DXVA 3I4TA 2E8QA 2ELDA 1VE2A 2DSHA 2P6DA 3UTCA 2P6IA 3TIXB 2E8RA 3LMMA 2EH5A 2E16A 2EL3A 2DSGA 2YBQA 3F7TA 2P6KA 3UV7A 2NPNA 2PCIA 2EN5A 2PCMA 2PCKA 3KE9A 3UTDA 1PJTA 2E08A 3NEIA 3URKA 3KELA 2PCGA 3T0GA 3ZGNA 3UV6A 1PJQA 2E4RA 1WDEA 3FFYA 2OWFA 2DXWA 2EGBA 2PCAA 2HR8A 2P2XA 2EK7A 2PB6A 2EJZA 2E0NA 1VCEA 2DV5A 3ND1A 3SZUA 2P6LA 2E8SA 4MV0A 2DEKA 2EEQA 4N7BA 2QBUA 2E8HA 4MUYA 2KYYA 2DV4A 2EGSA 2EK4A 3KE8A 4H4CA 4H4EA 1VHVA 2EHLA 2ED5A 2PB4A 4EB3A 2EH2A 2OWKA 2PCHA 2ZVBA 4MUXA 2OWUA 2E07A 2E0KA 3NUTA 3UV3A 4MV5A 2E15A 2BB3A 2PB5A 2P9DA 2ED3A 3T0FA 3UWMA 2P5FA 2HUQA 2DXXA
chains in the Genus database with same CATH topology
2E17A 1V9AA 1S4DA 2OWGA 1WYZA 3ZGLA 2YBOA 2ELEA 2ENIA 2ZVCA 2EL1A 1WNGA 2EKAA 2EK3A 2EH4A 2EHCA 3NDCA 2DV7A 2EGLA 2HUXA 3KWPA 2DV3A 4H4DA 5HW4A 2EMRA 2EL2A 1VA0A 4E16A 2EJJA 3KEFA 3KEMA 2E7RA 2P5CA 1PJSA 2HUVA 2HUTA 2EK2A 3DNFA 2DSIA 2OWVA 3FQ6A 3HH1A 2EL0A 2Z6RA 3SZOA 2CBFA 1CBFA 3SZLA 2E4NA 2EMUA 2EJKA 2DXVA 3I4TA 2E8QA 2ELDA 1VE2A 2DSHA 2P6DA 3UTCA 2P6IA 3TIXB 2E8RA 3LMMA 2EH5A 2E16A 2EL3A 2DSGA 2YBQA 3F7TA 2P6KA 3UV7A 2NPNA 2PCIA 2EN5A 2PCMA 2PCKA 3KE9A 3UTDA 1PJTA 2E08A 3NEIA 3URKA 3KELA 2PCGA 3T0GA 3ZGNA 3UV6A 1PJQA 2E4RA 1WDEA 3FFYA 2OWFA 2DXWA 2EGBA 2PCAA 2HR8A 2P2XA 2EK7A 2PB6A 2EJZA 2E0NA 1VCEA 2DV5A 3ND1A 3SZUA 2P6LA 2E8SA 4MV0A 2DEKA 2EEQA 4N7BA 2QBUA 2E8HA 4MUYA 2KYYA 2DV4A 2EGSA 2EK4A 3KE8A 4H4CA 4H4EA 1VHVA 2EHLA 2ED5A 2PB4A 4EB3A 2EH2A 2OWKA 2PCHA 2ZVBA 4MUXA 2OWUA 2E07A 2E0KA 3NUTA 3UV3A 4MV5A 2E15A 2BB3A 2PB5A 2P9DA 2ED3A 3T0FA 3UWMA 2P5FA 2HUQA 2DXXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E17 A;  1V9A A;  1S4D A;  2OWG A;  1WYZ A;  2YBO A;  2ELE A;  2ENI A;  2ZVC A;  2EL1 A;  1WNG A;  2EKA A;  2EK3 A;  2EH4 A;  2EHC A;  3NDC A;  2DV7 A;  2EGL A;  2HUX A;  3KWP A;  2DV3 A;  5HW4 A;  2EMR A;  2EL2 A;  1VA0 A;  4E16 A;  2EJJ A;  2E7R A;  2P5C A;  1PJS A;  2HUV A;  2HUT A;  2EK2 A;  2DSI A;  2OWV A;  3FQ6 A;  3HH1 A;  2EL0 A;  2Z6R A;  2CBF A;  1CBF A;  2E4N A;  2EMU A;  2EJK A;  2DXV A;  3I4T A;  2E8Q A;  2ELD A;  1VE2 A;  2DSH A;  2P6D A;  2P6I A;  2E8R A;  2EH5 A;  2E16 A;  2EL3 A;  2DSG A;  2YBQ A;  2P6K A;  2NPN A;  2PCI A;  2EN5 A;  2PCM A;  2PCK A;  1PJT A;  2E08 A;  3NEI A;  2PCG A;  1PJQ A;  2E4R A;  1WDE A;  3FFY A;  2OWF A;  2DXW A;  2EGB A;  2PCA A;  2HR8 A;  2P2X A;  2EK7 A;  2PB6 A;  2EJZ A;  2E0N A;  1VCE A;  2DV5 A;  3ND1 A;  2P6L A;  2E8S A;  2DEK A;  2EEQ A;  2QBU A;  2E8H A;  2DV4 A;  2EGS A;  2EK4 A;  1VHV A;  2EHL A;  2ED5 A;  2PB4 A;  2EH2 A;  2OWK A;  2PCH A;  2ZVB A;  2OWU A;  2E07 A;  2E0K A;  3NUT A;  2E15 A;  2BB3 A;  2PB5 A;  2P9D A;  2ED3 A;  2P5F A;  2HUQ A;  2DXX A; 
#chains in the Genus database with same CATH topology
 2E17 A;  1V9A A;  1S4D A;  2OWG A;  1WYZ A;  3ZGL A;  2YBO A;  2ELE A;  2ENI A;  2ZVC A;  2EL1 A;  1WNG A;  2EKA A;  2EK3 A;  2EH4 A;  2EHC A;  3NDC A;  2DV7 A;  2EGL A;  2HUX A;  3KWP A;  2DV3 A;  4H4D A;  5HW4 A;  2EMR A;  2EL2 A;  1VA0 A;  4E16 A;  2EJJ A;  3KEF A;  3KEM A;  2E7R A;  2P5C A;  1PJS A;  2HUV A;  2HUT A;  2EK2 A;  3DNF A;  2DSI A;  2OWV A;  3FQ6 A;  3HH1 A;  2EL0 A;  2Z6R A;  3SZO A;  2CBF A;  1CBF A;  3SZL A;  2E4N A;  2EMU A;  2EJK A;  2DXV A;  3I4T A;  2E8Q A;  2ELD A;  1VE2 A;  2DSH A;  2P6D A;  3UTC A;  2P6I A;  3TIX B;  2E8R A;  3LMM A;  2EH5 A;  2E16 A;  2EL3 A;  2DSG A;  2YBQ A;  3F7T A;  2P6K A;  3UV7 A;  2NPN A;  2PCI A;  2EN5 A;  2PCM A;  2PCK A;  3KE9 A;  3UTD A;  1PJT A;  2E08 A;  3NEI A;  3URK A;  3KEL A;  2PCG A;  3T0G A;  3ZGN A;  3UV6 A;  1PJQ A;  2E4R A;  1WDE A;  3FFY A;  2OWF A;  2DXW A;  2EGB A;  2PCA A;  2HR8 A;  2P2X A;  2EK7 A;  2PB6 A;  2EJZ A;  2E0N A;  1VCE A;  2DV5 A;  3ND1 A;  3SZU A;  2P6L A;  2E8S A;  4MV0 A;  2DEK A;  2EEQ A;  4N7B A;  2QBU A;  2E8H A;  4MUY A;  2KYY A;  2DV4 A;  2EGS A;  2EK4 A;  3KE8 A;  4H4C A;  4H4E A;  1VHV A;  2EHL A;  2ED5 A;  2PB4 A;  4EB3 A;  2EH2 A;  2OWK A;  2PCH A;  2ZVB A;  4MUX A;  2OWU A;  2E07 A;  2E0K A;  3NUT A;  3UV3 A;  4MV5 A;  2E15 A;  2BB3 A;  2PB5 A;  2P9D A;  2ED3 A;  3T0F A;  3UWM A;  2P5F A;  2HUQ A;  2DXX A; 
#chains in the Genus database with same CATH homology
 2E17 A;  1V9A A;  1S4D A;  2OWG A;  1WYZ A;  3ZGL A;  2YBO A;  2ELE A;  2ENI A;  2ZVC A;  2EL1 A;  1WNG A;  2EKA A;  2EK3 A;  2EH4 A;  2EHC A;  3NDC A;  2DV7 A;  2EGL A;  2HUX A;  3KWP A;  2DV3 A;  4H4D A;  5HW4 A;  2EMR A;  2EL2 A;  1VA0 A;  4E16 A;  2EJJ A;  3KEF A;  3KEM A;  2E7R A;  2P5C A;  1PJS A;  2HUV A;  2HUT A;  2EK2 A;  3DNF A;  2DSI A;  2OWV A;  3FQ6 A;  3HH1 A;  2EL0 A;  2Z6R A;  3SZO A;  2CBF A;  1CBF A;  3SZL A;  2E4N A;  2EMU A;  2EJK A;  2DXV A;  3I4T A;  2E8Q A;  2ELD A;  1VE2 A;  2DSH A;  2P6D A;  3UTC A;  2P6I A;  3TIX B;  2E8R A;  3LMM A;  2EH5 A;  2E16 A;  2EL3 A;  2DSG A;  2YBQ A;  3F7T A;  2P6K A;  3UV7 A;  2NPN A;  2PCI A;  2EN5 A;  2PCM A;  2PCK A;  3KE9 A;  3UTD A;  1PJT A;  2E08 A;  3NEI A;  3URK A;  3KEL A;  2PCG A;  3T0G A;  3ZGN A;  3UV6 A;  1PJQ A;  2E4R A;  1WDE A;  3FFY A;  2OWF A;  2DXW A;  2EGB A;  2PCA A;  2HR8 A;  2P2X A;  2EK7 A;  2PB6 A;  2EJZ A;  2E0N A;  1VCE A;  2DV5 A;  3ND1 A;  3SZU A;  2P6L A;  2E8S A;  4MV0 A;  2DEK A;  2EEQ A;  4N7B A;  2QBU A;  2E8H A;  4MUY A;  2KYY A;  2DV4 A;  2EGS A;  2EK4 A;  3KE8 A;  4H4C A;  4H4E A;  1VHV A;  2EHL A;  2ED5 A;  2PB4 A;  4EB3 A;  2EH2 A;  2OWK A;  2PCH A;  2ZVB A;  4MUX A;  2OWU A;  2E07 A;  2E0K A;  3NUT A;  3UV3 A;  4MV5 A;  2E15 A;  2BB3 A;  2PB5 A;  2P9D A;  2ED3 A;  3T0F A;  3UWM A;  2P5F A;  2HUQ A;  2DXX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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