2EL3A

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l242m)
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKMHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L242M)
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2el3A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2el3A01
2DXXA 2EH2A 2PCGA 2E8SA 2PCKA 2ENIA 2DV7A 2E15A 1CBFA 2Z6RA 2YBOA 2EL2A 2EMUA 2P5FA 1V9AA 2OWFA 2EHLA 2PCAA 3NEIA 2EK7A 2EJJA 3KWPA 2EK3A 3I4TA 1PJTA 2ED3A 2OWGA 2DV4A 4E16A 2P6DA 2DEKA 2E8HA 2E0KA 2EN5A 5HW4A 2E08A 2HR8A 3FFYA 2EH5A 2OWUA 2YBQA 2NPNA 2ZVCA 2P5CA 2P9DA 2EGSA 2EK2A 2EJKA 2QBUA 2P6KA 2E17A 2P6IA 2BB3A 2DXWA 2EMRA 1WNGA 1WDEA 2EEQA 2PCHA 2HUQA 3FQ6A 3NDCA 1S4DA 3ND1A 1VE2A 2HUTA 2HUVA 2EK4A 3HH1A 2PB6A 2ELDA 1WYZA 2EL3A 2E4RA 1PJSA 2DSGA 2HUXA 2DSIA 2E0NA 2PCMA 2EGBA 2CBFA 2EL1A 2EKAA 2DSHA 3NUTA 2EH4A 2EL0A 2ZVBA 2EGLA 2DV5A 2E8RA 2DXVA 1VCEA 2PB5A 2EJZA 2E16A 2PCIA 2E4NA 2ED5A 2EHCA 2PB4A 2ELEA 1PJQA 2DV3A 2OWVA 2P6LA 2E8QA 2E7RA 2P2XA 1VA0A 1VHVA 2OWKA 2E07A
chains in the Genus database with same CATH superfamily
2DXXA 2EH2A 2PCGA 3T0GA 2E8SA 2PCKA 3SZLA 2ENIA 4EB3A 2DV7A 2E15A 1CBFA 2Z6RA 3ZGNA 2YBOA 2EL2A 2EMUA 4MUYA 2P5FA 1V9AA 2OWFA 2EHLA 2PCAA 3NEIA 4H4DA 3T0FA 2EK7A 2EJJA 3KWPA 2EK3A 2KYYA 3KELA 3I4TA 1PJTA 3UWMA 2ED3A 2OWGA 2DV4A 4E16A 2P6DA 3KE8A 2DEKA 2E8HA 2E0KA 3DNFA 4MUXA 2EN5A 5HW4A 2E08A 2HR8A 3FFYA 2EH5A 2OWUA 2YBQA 2NPNA 2ZVCA 2P5CA 3UV3A 2P9DA 2EGSA 2EK2A 2EJKA 3UTCA 2QBUA 3URKA 2P6KA 2E17A 2P6IA 2BB3A 4N7BA 2DXWA 2EMRA 1WNGA 1WDEA 3ZGLA 2EEQA 3UV7A 2PCHA 2HUQA 3FQ6A 3NDCA 1S4DA 3KE9A 3ND1A 1VE2A 3UTDA 2HUTA 2HUVA 2EK4A 3HH1A 3LMMA 2PB6A 4H4CA 3KEFA 2ELDA 1WYZA 2EL3A 2E4RA 4H4EA 3TIXB 3SZOA 1PJSA 2DSGA 2HUXA 4MV5A 2DSIA 2E0NA 2PCMA 2EGBA 2CBFA 2EL1A 2EKAA 2DSHA 3UV6A 3NUTA 2EH4A 2EL0A 2ZVBA 2EGLA 2DV5A 2E8RA 4MV0A 2DXVA 1VCEA 3KEMA 2PB5A 2EJZA 2E16A 3F7TA 2PCIA 2E4NA 3SZUA 2ED5A 2EHCA 2PB4A 2ELEA 1PJQA 2DV3A 2OWVA 2P6LA 2E8QA 2E7RA 2P2XA 1VA0A 1VHVA 2OWKA 2E07A
chains in the Genus database with same CATH topology
2DXXA 2EH2A 2PCGA 3T0GA 2E8SA 2PCKA 3SZLA 2ENIA 4EB3A 2DV7A 2E15A 1CBFA 2Z6RA 3ZGNA 2YBOA 2EL2A 2EMUA 4MUYA 2P5FA 1V9AA 2OWFA 2EHLA 2PCAA 3NEIA 4H4DA 3T0FA 2EK7A 2EJJA 3KWPA 2EK3A 2KYYA 3KELA 3I4TA 1PJTA 3UWMA 2ED3A 2OWGA 2DV4A 4E16A 2P6DA 3KE8A 2DEKA 2E8HA 2E0KA 3DNFA 4MUXA 2EN5A 5HW4A 2E08A 2HR8A 3FFYA 2EH5A 2OWUA 2YBQA 2NPNA 2ZVCA 2P5CA 3UV3A 2P9DA 2EGSA 2EK2A 2EJKA 3UTCA 2QBUA 3URKA 2P6KA 2E17A 2P6IA 2BB3A 4N7BA 2DXWA 2EMRA 1WNGA 1WDEA 3ZGLA 2EEQA 3UV7A 2PCHA 2HUQA 3FQ6A 3NDCA 1S4DA 3KE9A 3ND1A 1VE2A 3UTDA 2HUTA 2HUVA 2EK4A 3HH1A 3LMMA 2PB6A 4H4CA 3KEFA 2ELDA 1WYZA 2EL3A 2E4RA 4H4EA 3TIXB 3SZOA 1PJSA 2DSGA 2HUXA 4MV5A 2DSIA 2E0NA 2PCMA 2EGBA 2CBFA 2EL1A 2EKAA 2DSHA 3UV6A 3NUTA 2EH4A 2EL0A 2ZVBA 2EGLA 2DV5A 2E8RA 4MV0A 2DXVA 1VCEA 3KEMA 2PB5A 2EJZA 2E16A 3F7TA 2PCIA 2E4NA 3SZUA 2ED5A 2EHCA 2PB4A 2ELEA 1PJQA 2DV3A 2OWVA 2P6LA 2E8QA 2E7RA 2P2XA 1VA0A 1VHVA 2OWKA 2E07A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXX A;  2EH2 A;  2PCG A;  2E8S A;  2PCK A;  2ENI A;  2DV7 A;  2E15 A;  1CBF A;  2Z6R A;  2YBO A;  2EL2 A;  2EMU A;  2P5F A;  1V9A A;  2OWF A;  2EHL A;  2PCA A;  3NEI A;  2EK7 A;  2EJJ A;  3KWP A;  2EK3 A;  3I4T A;  1PJT A;  2ED3 A;  2OWG A;  2DV4 A;  4E16 A;  2P6D A;  2DEK A;  2E8H A;  2E0K A;  2EN5 A;  5HW4 A;  2E08 A;  2HR8 A;  3FFY A;  2EH5 A;  2OWU A;  2YBQ A;  2NPN A;  2ZVC A;  2P5C A;  2P9D A;  2EGS A;  2EK2 A;  2EJK A;  2QBU A;  2P6K A;  2E17 A;  2P6I A;  2BB3 A;  2DXW A;  2EMR A;  1WNG A;  1WDE A;  2EEQ A;  2PCH A;  2HUQ A;  3FQ6 A;  3NDC A;  1S4D A;  3ND1 A;  1VE2 A;  2HUT A;  2HUV A;  2EK4 A;  3HH1 A;  2PB6 A;  2ELD A;  1WYZ A;  2EL3 A;  2E4R A;  1PJS A;  2DSG A;  2HUX A;  2DSI A;  2E0N A;  2PCM A;  2EGB A;  2CBF A;  2EL1 A;  2EKA A;  2DSH A;  3NUT A;  2EH4 A;  2EL0 A;  2ZVB A;  2EGL A;  2DV5 A;  2E8R A;  2DXV A;  1VCE A;  2PB5 A;  2EJZ A;  2E16 A;  2PCI A;  2E4N A;  2ED5 A;  2EHC A;  2PB4 A;  2ELE A;  1PJQ A;  2DV3 A;  2OWV A;  2P6L A;  2E8Q A;  2E7R A;  2P2X A;  1VA0 A;  1VHV A;  2OWK A;  2E07 A; 
#chains in the Genus database with same CATH topology
 2DXX A;  2EH2 A;  2PCG A;  3T0G A;  2E8S A;  2PCK A;  3SZL A;  2ENI A;  4EB3 A;  2DV7 A;  2E15 A;  1CBF A;  2Z6R A;  3ZGN A;  2YBO A;  2EL2 A;  2EMU A;  4MUY A;  2P5F A;  1V9A A;  2OWF A;  2EHL A;  2PCA A;  3NEI A;  4H4D A;  3T0F A;  2EK7 A;  2EJJ A;  3KWP A;  2EK3 A;  2KYY A;  3KEL A;  3I4T A;  1PJT A;  3UWM A;  2ED3 A;  2OWG A;  2DV4 A;  4E16 A;  2P6D A;  3KE8 A;  2DEK A;  2E8H A;  2E0K A;  3DNF A;  4MUX A;  2EN5 A;  5HW4 A;  2E08 A;  2HR8 A;  3FFY A;  2EH5 A;  2OWU A;  2YBQ A;  2NPN A;  2ZVC A;  2P5C A;  3UV3 A;  2P9D A;  2EGS A;  2EK2 A;  2EJK A;  3UTC A;  2QBU A;  3URK A;  2P6K A;  2E17 A;  2P6I A;  2BB3 A;  4N7B A;  2DXW A;  2EMR A;  1WNG A;  1WDE A;  3ZGL A;  2EEQ A;  3UV7 A;  2PCH A;  2HUQ A;  3FQ6 A;  3NDC A;  1S4D A;  3KE9 A;  3ND1 A;  1VE2 A;  3UTD A;  2HUT A;  2HUV A;  2EK4 A;  3HH1 A;  3LMM A;  2PB6 A;  4H4C A;  3KEF A;  2ELD A;  1WYZ A;  2EL3 A;  2E4R A;  4H4E A;  3TIX B;  3SZO A;  1PJS A;  2DSG A;  2HUX A;  4MV5 A;  2DSI A;  2E0N A;  2PCM A;  2EGB A;  2CBF A;  2EL1 A;  2EKA A;  2DSH A;  3UV6 A;  3NUT A;  2EH4 A;  2EL0 A;  2ZVB A;  2EGL A;  2DV5 A;  2E8R A;  4MV0 A;  2DXV A;  1VCE A;  3KEM A;  2PB5 A;  2EJZ A;  2E16 A;  3F7T A;  2PCI A;  2E4N A;  3SZU A;  2ED5 A;  2EHC A;  2PB4 A;  2ELE A;  1PJQ A;  2DV3 A;  2OWV A;  2P6L A;  2E8Q A;  2E7R A;  2P2X A;  1VA0 A;  1VHV A;  2OWK A;  2E07 A; 
#chains in the Genus database with same CATH homology
 2DXX A;  2EH2 A;  2PCG A;  3T0G A;  2E8S A;  2PCK A;  3SZL A;  2ENI A;  4EB3 A;  2DV7 A;  2E15 A;  1CBF A;  2Z6R A;  3ZGN A;  2YBO A;  2EL2 A;  2EMU A;  4MUY A;  2P5F A;  1V9A A;  2OWF A;  2EHL A;  2PCA A;  3NEI A;  4H4D A;  3T0F A;  2EK7 A;  2EJJ A;  3KWP A;  2EK3 A;  2KYY A;  3KEL A;  3I4T A;  1PJT A;  3UWM A;  2ED3 A;  2OWG A;  2DV4 A;  4E16 A;  2P6D A;  3KE8 A;  2DEK A;  2E8H A;  2E0K A;  3DNF A;  4MUX A;  2EN5 A;  5HW4 A;  2E08 A;  2HR8 A;  3FFY A;  2EH5 A;  2OWU A;  2YBQ A;  2NPN A;  2ZVC A;  2P5C A;  3UV3 A;  2P9D A;  2EGS A;  2EK2 A;  2EJK A;  3UTC A;  2QBU A;  3URK A;  2P6K A;  2E17 A;  2P6I A;  2BB3 A;  4N7B A;  2DXW A;  2EMR A;  1WNG A;  1WDE A;  3ZGL A;  2EEQ A;  3UV7 A;  2PCH A;  2HUQ A;  3FQ6 A;  3NDC A;  1S4D A;  3KE9 A;  3ND1 A;  1VE2 A;  3UTD A;  2HUT A;  2HUV A;  2EK4 A;  3HH1 A;  3LMM A;  2PB6 A;  4H4C A;  3KEF A;  2ELD A;  1WYZ A;  2EL3 A;  2E4R A;  4H4E A;  3TIX B;  3SZO A;  1PJS A;  2DSG A;  2HUX A;  4MV5 A;  2DSI A;  2E0N A;  2PCM A;  2EGB A;  2CBF A;  2EL1 A;  2EKA A;  2DSH A;  3UV6 A;  3NUT A;  2EH4 A;  2EL0 A;  2ZVB A;  2EGL A;  2DV5 A;  2E8R A;  4MV0 A;  2DXV A;  1VCE A;  3KEM A;  2PB5 A;  2EJZ A;  2E16 A;  3F7T A;  2PCI A;  2E4N A;  3SZU A;  2ED5 A;  2EHC A;  2PB4 A;  2ELE A;  1PJQ A;  2DV3 A;  2OWV A;  2P6L A;  2E8Q A;  2E7R A;  2P2X A;  1VA0 A;  1VHV A;  2OWK A;  2E07 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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