2ELEA

Mutant v18c structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITCKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant V18C structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eleA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eleA01
1VHVA 2ED5A 3HH1A 2E0KA 2EK2A 2HR8A 4E16A 1PJTA 2PCKA 3FQ6A 2PCMA 3NDCA 2EHCA 2PCGA 1S4DA 2E15A 2DV5A 1PJSA 2EKAA 2P9DA 1V9AA 2DV7A 2PCIA 2BB3A 2E8HA 2PB4A 2PB6A 2P2XA 2EGSA 2HUQA 2EL0A 2E7RA 2CBFA 2P6LA 2OWFA 3KWPA 2EJJA 2EGBA 2HUTA 2DEKA 2NPNA 2Z6RA 2EEQA 1WYZA 2EN5A 1CBFA 2OWGA 2E4NA 2EJZA 2ELDA 2E07A 2E0NA 2QBUA 2EK4A 1VA0A 2E08A 2HUVA 2E4RA 1VE2A 2DSHA 2DV4A 3ND1A 1WDEA 2PB5A 2EMUA 2E16A 2EK7A 2DSGA 2EL1A 3I4TA 2OWVA 2ZVBA 2E8RA 2PCAA 2DXXA 2OWKA 2DV3A 2EHLA 2EK3A 2EH4A 2DXVA 2P6IA 2YBQA 1WNGA 2DXWA 2P5FA 3FFYA 2EL3A 3NUTA 2E8QA 2PCHA 1VCEA 3NEIA 2EGLA 2P6DA 2ZVCA 2DSIA 5HW4A 2ELEA 2EMRA 2YBOA 2P5CA 2OWUA 2HUXA 2ED3A 1PJQA 2EH2A 2E17A 2E8SA 2ENIA 2EL2A 2EJKA 2P6KA 2EH5A
chains in the Genus database with same CATH superfamily
1VHVA 2ED5A 3HH1A 2E0KA 3KE8A 2EK2A 2HR8A 4E16A 1PJTA 2PCKA 3FQ6A 2PCMA 3NDCA 2EHCA 2PCGA 3SZUA 1S4DA 2E15A 2DV5A 1PJSA 2EKAA 2P9DA 1V9AA 2DV7A 2PCIA 2BB3A 2E8HA 2PB4A 3KEMA 2PB6A 2P2XA 2EGSA 2HUQA 2EL0A 2E7RA 3T0GA 2CBFA 2P6LA 2OWFA 3KWPA 3SZOA 2EJJA 2EGBA 4MV5A 2HUTA 3SZLA 2DEKA 2NPNA 3UTCA 2Z6RA 2EEQA 3UV6A 1WYZA 2EN5A 1CBFA 2OWGA 2E4NA 4N7BA 2EJZA 2ELDA 2E07A 2E0NA 2QBUA 3UTDA 2EK4A 1VA0A 2E08A 2HUVA 2E4RA 3KEFA 1VE2A 3UV7A 3DNFA 4MUXA 2DSHA 2DV4A 3ND1A 1WDEA 2PB5A 2EMUA 4H4DA 4EB3A 2E16A 2EK7A 2DSGA 2EL1A 3LMMA 3I4TA 2OWVA 2ZVBA 2E8RA 2PCAA 2DXXA 2OWKA 3T0FA 4H4EA 2DV3A 2EHLA 2EK3A 2EH4A 2DXVA 3URKA 2P6IA 2YBQA 4MV0A 3F7TA 1WNGA 3KE9A 2DXWA 2P5FA 3TIXB 3FFYA 2EL3A 3UV3A 3NUTA 2E8QA 2PCHA 1VCEA 3NEIA 3ZGNA 2EGLA 2P6DA 2ZVCA 2DSIA 5HW4A 3ZGLA 2ELEA 2EMRA 2YBOA 2P5CA 2OWUA 2HUXA 4MUYA 2ED3A 1PJQA 2EH2A 4H4CA 2E17A 2E8SA 2ENIA 2EL2A 2EJKA 3UWMA 2KYYA 2P6KA 3KELA 2EH5A
chains in the Genus database with same CATH topology
1VHVA 2ED5A 3HH1A 2E0KA 3KE8A 2EK2A 2HR8A 4E16A 1PJTA 2PCKA 3FQ6A 2PCMA 3NDCA 2EHCA 2PCGA 3SZUA 1S4DA 2E15A 2DV5A 1PJSA 2EKAA 2P9DA 1V9AA 2DV7A 2PCIA 2BB3A 2E8HA 2PB4A 3KEMA 2PB6A 2P2XA 2EGSA 2HUQA 2EL0A 2E7RA 3T0GA 2CBFA 2P6LA 2OWFA 3KWPA 3SZOA 2EJJA 2EGBA 4MV5A 2HUTA 3SZLA 2DEKA 2NPNA 3UTCA 2Z6RA 2EEQA 3UV6A 1WYZA 2EN5A 1CBFA 2OWGA 2E4NA 4N7BA 2EJZA 2ELDA 2E07A 2E0NA 2QBUA 3UTDA 2EK4A 1VA0A 2E08A 2HUVA 2E4RA 3KEFA 1VE2A 3UV7A 3DNFA 4MUXA 2DSHA 2DV4A 3ND1A 1WDEA 2PB5A 2EMUA 4H4DA 4EB3A 2E16A 2EK7A 2DSGA 2EL1A 3LMMA 3I4TA 2OWVA 2ZVBA 2E8RA 2PCAA 2DXXA 2OWKA 3T0FA 4H4EA 2DV3A 2EHLA 2EK3A 2EH4A 2DXVA 3URKA 2P6IA 2YBQA 4MV0A 3F7TA 1WNGA 3KE9A 2DXWA 2P5FA 3TIXB 3FFYA 2EL3A 3UV3A 3NUTA 2E8QA 2PCHA 1VCEA 3NEIA 3ZGNA 2EGLA 2P6DA 2ZVCA 2DSIA 5HW4A 3ZGLA 2ELEA 2EMRA 2YBOA 2P5CA 2OWUA 2HUXA 4MUYA 2ED3A 1PJQA 2EH2A 4H4CA 2E17A 2E8SA 2ENIA 2EL2A 2EJKA 3UWMA 2KYYA 2P6KA 3KELA 2EH5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VHV A;  2ED5 A;  3HH1 A;  2E0K A;  2EK2 A;  2HR8 A;  4E16 A;  1PJT A;  2PCK A;  3FQ6 A;  2PCM A;  3NDC A;  2EHC A;  2PCG A;  1S4D A;  2E15 A;  2DV5 A;  1PJS A;  2EKA A;  2P9D A;  1V9A A;  2DV7 A;  2PCI A;  2BB3 A;  2E8H A;  2PB4 A;  2PB6 A;  2P2X A;  2EGS A;  2HUQ A;  2EL0 A;  2E7R A;  2CBF A;  2P6L A;  2OWF A;  3KWP A;  2EJJ A;  2EGB A;  2HUT A;  2DEK A;  2NPN A;  2Z6R A;  2EEQ A;  1WYZ A;  2EN5 A;  1CBF A;  2OWG A;  2E4N A;  2EJZ A;  2ELD A;  2E07 A;  2E0N A;  2QBU A;  2EK4 A;  1VA0 A;  2E08 A;  2HUV A;  2E4R A;  1VE2 A;  2DSH A;  2DV4 A;  3ND1 A;  1WDE A;  2PB5 A;  2EMU A;  2E16 A;  2EK7 A;  2DSG A;  2EL1 A;  3I4T A;  2OWV A;  2ZVB A;  2E8R A;  2PCA A;  2DXX A;  2OWK A;  2DV3 A;  2EHL A;  2EK3 A;  2EH4 A;  2DXV A;  2P6I A;  2YBQ A;  1WNG A;  2DXW A;  2P5F A;  3FFY A;  2EL3 A;  3NUT A;  2E8Q A;  2PCH A;  1VCE A;  3NEI A;  2EGL A;  2P6D A;  2ZVC A;  2DSI A;  5HW4 A;  2ELE A;  2EMR A;  2YBO A;  2P5C A;  2OWU A;  2HUX A;  2ED3 A;  1PJQ A;  2EH2 A;  2E17 A;  2E8S A;  2ENI A;  2EL2 A;  2EJK A;  2P6K A;  2EH5 A; 
#chains in the Genus database with same CATH topology
 1VHV A;  2ED5 A;  3HH1 A;  2E0K A;  3KE8 A;  2EK2 A;  2HR8 A;  4E16 A;  1PJT A;  2PCK A;  3FQ6 A;  2PCM A;  3NDC A;  2EHC A;  2PCG A;  3SZU A;  1S4D A;  2E15 A;  2DV5 A;  1PJS A;  2EKA A;  2P9D A;  1V9A A;  2DV7 A;  2PCI A;  2BB3 A;  2E8H A;  2PB4 A;  3KEM A;  2PB6 A;  2P2X A;  2EGS A;  2HUQ A;  2EL0 A;  2E7R A;  3T0G A;  2CBF A;  2P6L A;  2OWF A;  3KWP A;  3SZO A;  2EJJ A;  2EGB A;  4MV5 A;  2HUT A;  3SZL A;  2DEK A;  2NPN A;  3UTC A;  2Z6R A;  2EEQ A;  3UV6 A;  1WYZ A;  2EN5 A;  1CBF A;  2OWG A;  2E4N A;  4N7B A;  2EJZ A;  2ELD A;  2E07 A;  2E0N A;  2QBU A;  3UTD A;  2EK4 A;  1VA0 A;  2E08 A;  2HUV A;  2E4R A;  3KEF A;  1VE2 A;  3UV7 A;  3DNF A;  4MUX A;  2DSH A;  2DV4 A;  3ND1 A;  1WDE A;  2PB5 A;  2EMU A;  4H4D A;  4EB3 A;  2E16 A;  2EK7 A;  2DSG A;  2EL1 A;  3LMM A;  3I4T A;  2OWV A;  2ZVB A;  2E8R A;  2PCA A;  2DXX A;  2OWK A;  3T0F A;  4H4E A;  2DV3 A;  2EHL A;  2EK3 A;  2EH4 A;  2DXV A;  3URK A;  2P6I A;  2YBQ A;  4MV0 A;  3F7T A;  1WNG A;  3KE9 A;  2DXW A;  2P5F A;  3TIX B;  3FFY A;  2EL3 A;  3UV3 A;  3NUT A;  2E8Q A;  2PCH A;  1VCE A;  3NEI A;  3ZGN A;  2EGL A;  2P6D A;  2ZVC A;  2DSI A;  5HW4 A;  3ZGL A;  2ELE A;  2EMR A;  2YBO A;  2P5C A;  2OWU A;  2HUX A;  4MUY A;  2ED3 A;  1PJQ A;  2EH2 A;  4H4C A;  2E17 A;  2E8S A;  2ENI A;  2EL2 A;  2EJK A;  3UWM A;  2KYY A;  2P6K A;  3KEL A;  2EH5 A; 
#chains in the Genus database with same CATH homology
 1VHV A;  2ED5 A;  3HH1 A;  2E0K A;  3KE8 A;  2EK2 A;  2HR8 A;  4E16 A;  1PJT A;  2PCK A;  3FQ6 A;  2PCM A;  3NDC A;  2EHC A;  2PCG A;  3SZU A;  1S4D A;  2E15 A;  2DV5 A;  1PJS A;  2EKA A;  2P9D A;  1V9A A;  2DV7 A;  2PCI A;  2BB3 A;  2E8H A;  2PB4 A;  3KEM A;  2PB6 A;  2P2X A;  2EGS A;  2HUQ A;  2EL0 A;  2E7R A;  3T0G A;  2CBF A;  2P6L A;  2OWF A;  3KWP A;  3SZO A;  2EJJ A;  2EGB A;  4MV5 A;  2HUT A;  3SZL A;  2DEK A;  2NPN A;  3UTC A;  2Z6R A;  2EEQ A;  3UV6 A;  1WYZ A;  2EN5 A;  1CBF A;  2OWG A;  2E4N A;  4N7B A;  2EJZ A;  2ELD A;  2E07 A;  2E0N A;  2QBU A;  3UTD A;  2EK4 A;  1VA0 A;  2E08 A;  2HUV A;  2E4R A;  3KEF A;  1VE2 A;  3UV7 A;  3DNF A;  4MUX A;  2DSH A;  2DV4 A;  3ND1 A;  1WDE A;  2PB5 A;  2EMU A;  4H4D A;  4EB3 A;  2E16 A;  2EK7 A;  2DSG A;  2EL1 A;  3LMM A;  3I4T A;  2OWV A;  2ZVB A;  2E8R A;  2PCA A;  2DXX A;  2OWK A;  3T0F A;  4H4E A;  2DV3 A;  2EHL A;  2EK3 A;  2EH4 A;  2DXV A;  3URK A;  2P6I A;  2YBQ A;  4MV0 A;  3F7T A;  1WNG A;  3KE9 A;  2DXW A;  2P5F A;  3TIX B;  3FFY A;  2EL3 A;  3UV3 A;  3NUT A;  2E8Q A;  2PCH A;  1VCE A;  3NEI A;  3ZGN A;  2EGL A;  2P6D A;  2ZVC A;  2DSI A;  5HW4 A;  3ZGL A;  2ELE A;  2EMR A;  2YBO A;  2P5C A;  2OWU A;  2HUX A;  4MUY A;  2ED3 A;  1PJQ A;  2EH2 A;  4H4C A;  2E17 A;  2E8S A;  2ENI A;  2EL2 A;  2EJK A;  3UWM A;  2KYY A;  2P6K A;  3KEL A;  2EH5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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