2EMRA

Mutant l65m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVEMNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutant L65M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2emrA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2emrA01
2EGBA 2PCGA 3KWPA 2PCHA 1S4DA 2OWVA 2EK7A 2OWGA 2P2XA 2OWFA 2P6KA 2P5CA 2E0KA 2HUXA 2PCIA 2DSIA 1VHVA 2YBQA 2EL1A 2QBUA 2EHLA 2Z6RA 2E0NA 2HR8A 2EJJA 2EH5A 1CBFA 2E07A 2E15A 2EK4A 2ENIA 3NDCA 1V9AA 2E16A 2ELEA 2EGSA 2HUTA 2P6DA 2OWKA 4E16A 2PB6A 2EEQA 5HW4A 2ED3A 2EK2A 2EH2A 2E8RA 2EGLA 2P6IA 1VA0A 1WYZA 2ZVCA 2EMUA 2EJZA 2E8SA 3FFYA 2E17A 1WNGA 2ED5A 3FQ6A 2EH4A 2EK3A 2EMRA 2EL3A 2NPNA 2PB4A 1VCEA 2ZVBA 2DXXA 2DXWA 2E8HA 2E8QA 2EL2A 2E08A 3HH1A 1VE2A 2DEKA 2P6LA 1WDEA 2PCMA 2EN5A 2P9DA 3NUTA 2EL0A 2HUVA 2PCKA 2DSHA 2EKAA 2P5FA 2DV4A 1PJTA 2HUQA 2BB3A 2DSGA 3NEIA 2EJKA 2DV3A 3ND1A 2YBOA 2CBFA 2ELDA 2E4NA 2PB5A 3I4TA 2DV5A 2E7RA 2E4RA 2DXVA 2DV7A 2OWUA 2EHCA 1PJQA 1PJSA 2PCAA
chains in the Genus database with same CATH superfamily
2EGBA 3KEMA 2PCGA 3KWPA 2PCHA 4H4CA 1S4DA 2OWVA 2EK7A 4H4EA 3UWMA 2OWGA 3SZUA 2P2XA 2OWFA 3UV6A 3UTCA 2P6KA 2P5CA 2E0KA 2HUXA 2PCIA 2DSIA 1VHVA 3URKA 2YBQA 3UTDA 3KE9A 3T0FA 2EL1A 2QBUA 2EHLA 2Z6RA 2E0NA 2HR8A 2EJJA 2EH5A 3F7TA 1CBFA 2E07A 2E15A 2EK4A 2ENIA 3NDCA 1V9AA 2E16A 2ELEA 2EGSA 2HUTA 2P6DA 2OWKA 4E16A 2PB6A 3TIXB 4EB3A 2EEQA 5HW4A 2ED3A 2EK2A 2EH2A 3KEFA 2E8RA 2EGLA 3LMMA 2P6IA 1VA0A 1WYZA 2ZVCA 2EMUA 2EJZA 2E8SA 3FFYA 2E17A 1WNGA 2ED5A 3UV7A 3FQ6A 2EH4A 2EK3A 2EMRA 2EL3A 2NPNA 2PB4A 1VCEA 2ZVBA 2DXXA 2DXWA 2E8HA 2E8QA 2EL2A 2E08A 4MUXA 3HH1A 1VE2A 4N7BA 4H4DA 2DEKA 2P6LA 1WDEA 2PCMA 2EN5A 2P9DA 3NUTA 4MUYA 2EL0A 2HUVA 2PCKA 2DSHA 2EKAA 2P5FA 4MV5A 3ZGNA 2DV4A 1PJTA 4MV0A 3ZGLA 2HUQA 2BB3A 2DSGA 3NEIA 3KELA 3T0GA 2EJKA 2DV3A 3ND1A 2YBOA 3SZOA 2CBFA 2ELDA 3UV3A 2E4NA 2PB5A 3I4TA 2DV5A 2E7RA 2E4RA 2KYYA 3SZLA 2DXVA 2DV7A 2OWUA 2EHCA 3KE8A 1PJQA 3DNFA 1PJSA 2PCAA
chains in the Genus database with same CATH topology
2EGBA 3KEMA 2PCGA 3KWPA 2PCHA 4H4CA 1S4DA 2OWVA 2EK7A 4H4EA 3UWMA 2OWGA 3SZUA 2P2XA 2OWFA 3UV6A 3UTCA 2P6KA 2P5CA 2E0KA 2HUXA 2PCIA 2DSIA 1VHVA 3URKA 2YBQA 3UTDA 3KE9A 3T0FA 2EL1A 2QBUA 2EHLA 2Z6RA 2E0NA 2HR8A 2EJJA 2EH5A 3F7TA 1CBFA 2E07A 2E15A 2EK4A 2ENIA 3NDCA 1V9AA 2E16A 2ELEA 2EGSA 2HUTA 2P6DA 2OWKA 4E16A 2PB6A 3TIXB 4EB3A 2EEQA 5HW4A 2ED3A 2EK2A 2EH2A 3KEFA 2E8RA 2EGLA 3LMMA 2P6IA 1VA0A 1WYZA 2ZVCA 2EMUA 2EJZA 2E8SA 3FFYA 2E17A 1WNGA 2ED5A 3UV7A 3FQ6A 2EH4A 2EK3A 2EMRA 2EL3A 2NPNA 2PB4A 1VCEA 2ZVBA 2DXXA 2DXWA 2E8HA 2E8QA 2EL2A 2E08A 4MUXA 3HH1A 1VE2A 4N7BA 4H4DA 2DEKA 2P6LA 1WDEA 2PCMA 2EN5A 2P9DA 3NUTA 4MUYA 2EL0A 2HUVA 2PCKA 2DSHA 2EKAA 2P5FA 4MV5A 3ZGNA 2DV4A 1PJTA 4MV0A 3ZGLA 2HUQA 2BB3A 2DSGA 3NEIA 3KELA 3T0GA 2EJKA 2DV3A 3ND1A 2YBOA 3SZOA 2CBFA 2ELDA 3UV3A 2E4NA 2PB5A 3I4TA 2DV5A 2E7RA 2E4RA 2KYYA 3SZLA 2DXVA 2DV7A 2OWUA 2EHCA 3KE8A 1PJQA 3DNFA 1PJSA 2PCAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGB A;  2PCG A;  3KWP A;  2PCH A;  1S4D A;  2OWV A;  2EK7 A;  2OWG A;  2P2X A;  2OWF A;  2P6K A;  2P5C A;  2E0K A;  2HUX A;  2PCI A;  2DSI A;  1VHV A;  2YBQ A;  2EL1 A;  2QBU A;  2EHL A;  2Z6R A;  2E0N A;  2HR8 A;  2EJJ A;  2EH5 A;  1CBF A;  2E07 A;  2E15 A;  2EK4 A;  2ENI A;  3NDC A;  1V9A A;  2E16 A;  2ELE A;  2EGS A;  2HUT A;  2P6D A;  2OWK A;  4E16 A;  2PB6 A;  2EEQ A;  5HW4 A;  2ED3 A;  2EK2 A;  2EH2 A;  2E8R A;  2EGL A;  2P6I A;  1VA0 A;  1WYZ A;  2ZVC A;  2EMU A;  2EJZ A;  2E8S A;  3FFY A;  2E17 A;  1WNG A;  2ED5 A;  3FQ6 A;  2EH4 A;  2EK3 A;  2EMR A;  2EL3 A;  2NPN A;  2PB4 A;  1VCE A;  2ZVB A;  2DXX A;  2DXW A;  2E8H A;  2E8Q A;  2EL2 A;  2E08 A;  3HH1 A;  1VE2 A;  2DEK A;  2P6L A;  1WDE A;  2PCM A;  2EN5 A;  2P9D A;  3NUT A;  2EL0 A;  2HUV A;  2PCK A;  2DSH A;  2EKA A;  2P5F A;  2DV4 A;  1PJT A;  2HUQ A;  2BB3 A;  2DSG A;  3NEI A;  2EJK A;  2DV3 A;  3ND1 A;  2YBO A;  2CBF A;  2ELD A;  2E4N A;  2PB5 A;  3I4T A;  2DV5 A;  2E7R A;  2E4R A;  2DXV A;  2DV7 A;  2OWU A;  2EHC A;  1PJQ A;  1PJS A;  2PCA A; 
#chains in the Genus database with same CATH topology
 2EGB A;  3KEM A;  2PCG A;  3KWP A;  2PCH A;  4H4C A;  1S4D A;  2OWV A;  2EK7 A;  4H4E A;  3UWM A;  2OWG A;  3SZU A;  2P2X A;  2OWF A;  3UV6 A;  3UTC A;  2P6K A;  2P5C A;  2E0K A;  2HUX A;  2PCI A;  2DSI A;  1VHV A;  3URK A;  2YBQ A;  3UTD A;  3KE9 A;  3T0F A;  2EL1 A;  2QBU A;  2EHL A;  2Z6R A;  2E0N A;  2HR8 A;  2EJJ A;  2EH5 A;  3F7T A;  1CBF A;  2E07 A;  2E15 A;  2EK4 A;  2ENI A;  3NDC A;  1V9A A;  2E16 A;  2ELE A;  2EGS A;  2HUT A;  2P6D A;  2OWK A;  4E16 A;  2PB6 A;  3TIX B;  4EB3 A;  2EEQ A;  5HW4 A;  2ED3 A;  2EK2 A;  2EH2 A;  3KEF A;  2E8R A;  2EGL A;  3LMM A;  2P6I A;  1VA0 A;  1WYZ A;  2ZVC A;  2EMU A;  2EJZ A;  2E8S A;  3FFY A;  2E17 A;  1WNG A;  2ED5 A;  3UV7 A;  3FQ6 A;  2EH4 A;  2EK3 A;  2EMR A;  2EL3 A;  2NPN A;  2PB4 A;  1VCE A;  2ZVB A;  2DXX A;  2DXW A;  2E8H A;  2E8Q A;  2EL2 A;  2E08 A;  4MUX A;  3HH1 A;  1VE2 A;  4N7B A;  4H4D A;  2DEK A;  2P6L A;  1WDE A;  2PCM A;  2EN5 A;  2P9D A;  3NUT A;  4MUY A;  2EL0 A;  2HUV A;  2PCK A;  2DSH A;  2EKA A;  2P5F A;  4MV5 A;  3ZGN A;  2DV4 A;  1PJT A;  4MV0 A;  3ZGL A;  2HUQ A;  2BB3 A;  2DSG A;  3NEI A;  3KEL A;  3T0G A;  2EJK A;  2DV3 A;  3ND1 A;  2YBO A;  3SZO A;  2CBF A;  2ELD A;  3UV3 A;  2E4N A;  2PB5 A;  3I4T A;  2DV5 A;  2E7R A;  2E4R A;  2KYY A;  3SZL A;  2DXV A;  2DV7 A;  2OWU A;  2EHC A;  3KE8 A;  1PJQ A;  3DNF A;  1PJS A;  2PCA A; 
#chains in the Genus database with same CATH homology
 2EGB A;  3KEM A;  2PCG A;  3KWP A;  2PCH A;  4H4C A;  1S4D A;  2OWV A;  2EK7 A;  4H4E A;  3UWM A;  2OWG A;  3SZU A;  2P2X A;  2OWF A;  3UV6 A;  3UTC A;  2P6K A;  2P5C A;  2E0K A;  2HUX A;  2PCI A;  2DSI A;  1VHV A;  3URK A;  2YBQ A;  3UTD A;  3KE9 A;  3T0F A;  2EL1 A;  2QBU A;  2EHL A;  2Z6R A;  2E0N A;  2HR8 A;  2EJJ A;  2EH5 A;  3F7T A;  1CBF A;  2E07 A;  2E15 A;  2EK4 A;  2ENI A;  3NDC A;  1V9A A;  2E16 A;  2ELE A;  2EGS A;  2HUT A;  2P6D A;  2OWK A;  4E16 A;  2PB6 A;  3TIX B;  4EB3 A;  2EEQ A;  5HW4 A;  2ED3 A;  2EK2 A;  2EH2 A;  3KEF A;  2E8R A;  2EGL A;  3LMM A;  2P6I A;  1VA0 A;  1WYZ A;  2ZVC A;  2EMU A;  2EJZ A;  2E8S A;  3FFY A;  2E17 A;  1WNG A;  2ED5 A;  3UV7 A;  3FQ6 A;  2EH4 A;  2EK3 A;  2EMR A;  2EL3 A;  2NPN A;  2PB4 A;  1VCE A;  2ZVB A;  2DXX A;  2DXW A;  2E8H A;  2E8Q A;  2EL2 A;  2E08 A;  4MUX A;  3HH1 A;  1VE2 A;  4N7B A;  4H4D A;  2DEK A;  2P6L A;  1WDE A;  2PCM A;  2EN5 A;  2P9D A;  3NUT A;  4MUY A;  2EL0 A;  2HUV A;  2PCK A;  2DSH A;  2EKA A;  2P5F A;  4MV5 A;  3ZGN A;  2DV4 A;  1PJT A;  4MV0 A;  3ZGL A;  2HUQ A;  2BB3 A;  2DSG A;  3NEI A;  3KEL A;  3T0G A;  2EJK A;  2DV3 A;  3ND1 A;  2YBO A;  3SZO A;  2CBF A;  2ELD A;  3UV3 A;  2E4N A;  2PB5 A;  3I4T A;  2DV5 A;  2E7R A;  2E4R A;  2KYY A;  3SZL A;  2DXV A;  2DV7 A;  2OWU A;  2EHC A;  3KE8 A;  1PJQ A;  3DNF A;  1PJS A;  2PCA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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