2EMRA

Mutant l65m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVEMNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Mutant L65M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2emrA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2emrA01
2NPNA 2P6DA 2HR8A 1VHVA 1V9AA 2E8QA 2DSGA 5HW4A 2P6LA 2E4NA 2EK3A 1WDEA 3I4TA 2DXVA 2HUQA 2P5CA 2DV7A 2QBUA 2DSIA 3ND1A 2E07A 2DV4A 2ZVCA 2EEQA 2YBQA 2PB5A 2PB4A 2EGBA 1VE2A 2EN5A 2YBOA 2EKAA 2Z6RA 2PCGA 2E08A 2EJJA 2EL0A 2ED5A 1PJQA 3FFYA 1VCEA 2PCKA 2HUTA 1CBFA 2E0NA 2BB3A 2EGSA 2EH4A 2EK7A 1S4DA 2EL2A 1PJTA 3NUTA 2OWFA 2E0KA 2P5FA 2EHCA 2EMUA 2DSHA 2EHLA 2P6IA 2DV3A 2E7RA 2P9DA 2DEKA 2DXXA 2ZVBA 2CBFA 4E16A 1WNGA 2EJZA 3FQ6A 2ELEA 2HUXA 2PCAA 2EMRA 2PB6A 1WYZA 2E8SA 2EK4A 2HUVA 1PJSA 2E8RA 2PCIA 3KWPA 2EJKA 3HH1A 2ED3A 2OWVA 2ENIA 2EGLA 2EL3A 2EK2A 2E16A 3NEIA 2PCHA 2OWKA 2E17A 2EH5A 2E4RA 1VA0A 2ELDA 3NDCA 2DV5A 2OWUA 2E8HA 2PCMA 2P6KA 2EH2A 2EL1A 2E15A 2DXWA 2OWGA 2P2XA
chains in the Genus database with same CATH superfamily
2NPNA 2P6DA 2KYYA 2HR8A 3KEMA 4H4CA 1VHVA 1V9AA 3URKA 2E8QA 2DSGA 3T0GA 5HW4A 2P6LA 2E4NA 2EK3A 3KELA 1WDEA 3I4TA 3UV6A 2DXVA 2HUQA 2P5CA 2DV7A 2QBUA 3UV3A 4MV0A 2DSIA 3UTDA 3ND1A 2E07A 2DV4A 3SZLA 2ZVCA 2EEQA 3KE8A 2YBQA 4H4EA 2PB5A 4N7BA 2PB4A 4MUXA 2EGBA 1VE2A 2EN5A 2YBOA 2EKAA 4MV5A 2Z6RA 4EB3A 2PCGA 2E08A 2EJJA 2EL0A 2ED5A 1PJQA 3FFYA 1VCEA 2PCKA 2HUTA 3T0FA 3SZOA 1CBFA 2E0NA 2BB3A 2EGSA 2EH4A 2EK7A 1S4DA 2EL2A 1PJTA 3F7TA 3NUTA 2OWFA 3DNFA 2E0KA 2P5FA 2EHCA 2EMUA 2DSHA 2EHLA 2P6IA 2DV3A 4MUYA 2E7RA 2P9DA 3UTCA 2DEKA 3SZUA 2DXXA 2ZVBA 2CBFA 4E16A 1WNGA 2EJZA 3FQ6A 2ELEA 2HUXA 2PCAA 2EMRA 2PB6A 3TIXB 1WYZA 2E8SA 2EK4A 3UWMA 2HUVA 1PJSA 3ZGLA 3UV7A 2E8RA 2PCIA 3KWPA 2EJKA 3HH1A 2ED3A 2OWVA 2ENIA 2EGLA 2EL3A 2EK2A 2E16A 3NEIA 2PCHA 2OWKA 2E17A 3KEFA 2EH5A 3LMMA 4H4DA 2E4RA 1VA0A 3KE9A 3ZGNA 2ELDA 3NDCA 2DV5A 2OWUA 2E8HA 2PCMA 2P6KA 2EH2A 2EL1A 2E15A 2DXWA 2OWGA 2P2XA
chains in the Genus database with same CATH topology
2NPNA 2P6DA 2KYYA 2HR8A 3KEMA 4H4CA 1VHVA 1V9AA 3URKA 2E8QA 2DSGA 3T0GA 5HW4A 2P6LA 2E4NA 2EK3A 3KELA 1WDEA 3I4TA 3UV6A 2DXVA 2HUQA 2P5CA 2DV7A 2QBUA 3UV3A 4MV0A 2DSIA 3UTDA 3ND1A 2E07A 2DV4A 3SZLA 2ZVCA 2EEQA 3KE8A 2YBQA 4H4EA 2PB5A 4N7BA 2PB4A 4MUXA 2EGBA 1VE2A 2EN5A 2YBOA 2EKAA 4MV5A 2Z6RA 4EB3A 2PCGA 2E08A 2EJJA 2EL0A 2ED5A 1PJQA 3FFYA 1VCEA 2PCKA 2HUTA 3T0FA 3SZOA 1CBFA 2E0NA 2BB3A 2EGSA 2EH4A 2EK7A 1S4DA 2EL2A 1PJTA 3F7TA 3NUTA 2OWFA 3DNFA 2E0KA 2P5FA 2EHCA 2EMUA 2DSHA 2EHLA 2P6IA 2DV3A 4MUYA 2E7RA 2P9DA 3UTCA 2DEKA 3SZUA 2DXXA 2ZVBA 2CBFA 4E16A 1WNGA 2EJZA 3FQ6A 2ELEA 2HUXA 2PCAA 2EMRA 2PB6A 3TIXB 1WYZA 2E8SA 2EK4A 3UWMA 2HUVA 1PJSA 3ZGLA 3UV7A 2E8RA 2PCIA 3KWPA 2EJKA 3HH1A 2ED3A 2OWVA 2ENIA 2EGLA 2EL3A 2EK2A 2E16A 3NEIA 2PCHA 2OWKA 2E17A 3KEFA 2EH5A 3LMMA 4H4DA 2E4RA 1VA0A 3KE9A 3ZGNA 2ELDA 3NDCA 2DV5A 2OWUA 2E8HA 2PCMA 2P6KA 2EH2A 2EL1A 2E15A 2DXWA 2OWGA 2P2XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NPN A;  2P6D A;  2HR8 A;  1VHV A;  1V9A A;  2E8Q A;  2DSG A;  5HW4 A;  2P6L A;  2E4N A;  2EK3 A;  1WDE A;  3I4T A;  2DXV A;  2HUQ A;  2P5C A;  2DV7 A;  2QBU A;  2DSI A;  3ND1 A;  2E07 A;  2DV4 A;  2ZVC A;  2EEQ A;  2YBQ A;  2PB5 A;  2PB4 A;  2EGB A;  1VE2 A;  2EN5 A;  2YBO A;  2EKA A;  2Z6R A;  2PCG A;  2E08 A;  2EJJ A;  2EL0 A;  2ED5 A;  1PJQ A;  3FFY A;  1VCE A;  2PCK A;  2HUT A;  1CBF A;  2E0N A;  2BB3 A;  2EGS A;  2EH4 A;  2EK7 A;  1S4D A;  2EL2 A;  1PJT A;  3NUT A;  2OWF A;  2E0K A;  2P5F A;  2EHC A;  2EMU A;  2DSH A;  2EHL A;  2P6I A;  2DV3 A;  2E7R A;  2P9D A;  2DEK A;  2DXX A;  2ZVB A;  2CBF A;  4E16 A;  1WNG A;  2EJZ A;  3FQ6 A;  2ELE A;  2HUX A;  2PCA A;  2EMR A;  2PB6 A;  1WYZ A;  2E8S A;  2EK4 A;  2HUV A;  1PJS A;  2E8R A;  2PCI A;  3KWP A;  2EJK A;  3HH1 A;  2ED3 A;  2OWV A;  2ENI A;  2EGL A;  2EL3 A;  2EK2 A;  2E16 A;  3NEI A;  2PCH A;  2OWK A;  2E17 A;  2EH5 A;  2E4R A;  1VA0 A;  2ELD A;  3NDC A;  2DV5 A;  2OWU A;  2E8H A;  2PCM A;  2P6K A;  2EH2 A;  2EL1 A;  2E15 A;  2DXW A;  2OWG A;  2P2X A; 
#chains in the Genus database with same CATH topology
 2NPN A;  2P6D A;  2KYY A;  2HR8 A;  3KEM A;  4H4C A;  1VHV A;  1V9A A;  3URK A;  2E8Q A;  2DSG A;  3T0G A;  5HW4 A;  2P6L A;  2E4N A;  2EK3 A;  3KEL A;  1WDE A;  3I4T A;  3UV6 A;  2DXV A;  2HUQ A;  2P5C A;  2DV7 A;  2QBU A;  3UV3 A;  4MV0 A;  2DSI A;  3UTD A;  3ND1 A;  2E07 A;  2DV4 A;  3SZL A;  2ZVC A;  2EEQ A;  3KE8 A;  2YBQ A;  4H4E A;  2PB5 A;  4N7B A;  2PB4 A;  4MUX A;  2EGB A;  1VE2 A;  2EN5 A;  2YBO A;  2EKA A;  4MV5 A;  2Z6R A;  4EB3 A;  2PCG A;  2E08 A;  2EJJ A;  2EL0 A;  2ED5 A;  1PJQ A;  3FFY A;  1VCE A;  2PCK A;  2HUT A;  3T0F A;  3SZO A;  1CBF A;  2E0N A;  2BB3 A;  2EGS A;  2EH4 A;  2EK7 A;  1S4D A;  2EL2 A;  1PJT A;  3F7T A;  3NUT A;  2OWF A;  3DNF A;  2E0K A;  2P5F A;  2EHC A;  2EMU A;  2DSH A;  2EHL A;  2P6I A;  2DV3 A;  4MUY A;  2E7R A;  2P9D A;  3UTC A;  2DEK A;  3SZU A;  2DXX A;  2ZVB A;  2CBF A;  4E16 A;  1WNG A;  2EJZ A;  3FQ6 A;  2ELE A;  2HUX A;  2PCA A;  2EMR A;  2PB6 A;  3TIX B;  1WYZ A;  2E8S A;  2EK4 A;  3UWM A;  2HUV A;  1PJS A;  3ZGL A;  3UV7 A;  2E8R A;  2PCI A;  3KWP A;  2EJK A;  3HH1 A;  2ED3 A;  2OWV A;  2ENI A;  2EGL A;  2EL3 A;  2EK2 A;  2E16 A;  3NEI A;  2PCH A;  2OWK A;  2E17 A;  3KEF A;  2EH5 A;  3LMM A;  4H4D A;  2E4R A;  1VA0 A;  3KE9 A;  3ZGN A;  2ELD A;  3NDC A;  2DV5 A;  2OWU A;  2E8H A;  2PCM A;  2P6K A;  2EH2 A;  2EL1 A;  2E15 A;  2DXW A;  2OWG A;  2P2X A; 
#chains in the Genus database with same CATH homology
 2NPN A;  2P6D A;  2KYY A;  2HR8 A;  3KEM A;  4H4C A;  1VHV A;  1V9A A;  3URK A;  2E8Q A;  2DSG A;  3T0G A;  5HW4 A;  2P6L A;  2E4N A;  2EK3 A;  3KEL A;  1WDE A;  3I4T A;  3UV6 A;  2DXV A;  2HUQ A;  2P5C A;  2DV7 A;  2QBU A;  3UV3 A;  4MV0 A;  2DSI A;  3UTD A;  3ND1 A;  2E07 A;  2DV4 A;  3SZL A;  2ZVC A;  2EEQ A;  3KE8 A;  2YBQ A;  4H4E A;  2PB5 A;  4N7B A;  2PB4 A;  4MUX A;  2EGB A;  1VE2 A;  2EN5 A;  2YBO A;  2EKA A;  4MV5 A;  2Z6R A;  4EB3 A;  2PCG A;  2E08 A;  2EJJ A;  2EL0 A;  2ED5 A;  1PJQ A;  3FFY A;  1VCE A;  2PCK A;  2HUT A;  3T0F A;  3SZO A;  1CBF A;  2E0N A;  2BB3 A;  2EGS A;  2EH4 A;  2EK7 A;  1S4D A;  2EL2 A;  1PJT A;  3F7T A;  3NUT A;  2OWF A;  3DNF A;  2E0K A;  2P5F A;  2EHC A;  2EMU A;  2DSH A;  2EHL A;  2P6I A;  2DV3 A;  4MUY A;  2E7R A;  2P9D A;  3UTC A;  2DEK A;  3SZU A;  2DXX A;  2ZVB A;  2CBF A;  4E16 A;  1WNG A;  2EJZ A;  3FQ6 A;  2ELE A;  2HUX A;  2PCA A;  2EMR A;  2PB6 A;  3TIX B;  1WYZ A;  2E8S A;  2EK4 A;  3UWM A;  2HUV A;  1PJS A;  3ZGL A;  3UV7 A;  2E8R A;  2PCI A;  3KWP A;  2EJK A;  3HH1 A;  2ED3 A;  2OWV A;  2ENI A;  2EGL A;  2EL3 A;  2EK2 A;  2E16 A;  3NEI A;  2PCH A;  2OWK A;  2E17 A;  3KEF A;  2EH5 A;  3LMM A;  4H4D A;  2E4R A;  1VA0 A;  3KE9 A;  3ZGN A;  2ELD A;  3NDC A;  2DV5 A;  2OWU A;  2E8H A;  2PCM A;  2P6K A;  2EH2 A;  2EL1 A;  2E15 A;  2DXW A;  2OWG A;  2P2X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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