2ER8A

Crystal structure of leu3 dna-binding domain complexed with a 12mer dna duplex
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
68
structure length
68
Chain Sequence
KRKFACVECRQQKSKCDAHERAPEPCTKCAKKNVPCILKRDFRRTYKRARNEAIEKRFKELTRTLTNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of a Leu3-DNA complex: recognition of everted CGG half-sites by a Zn2Cys6 binuclear cluster protein.
pubmed doi rcsb
molecule tags Transcription activator/dna
source organism Saccharomyces cerevisiae
molecule keywords 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*G)-3'
total genus 17
structure length 68
sequence length 68
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-10-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.240.10 Few Secondary Structures Irregular CD2-Gal4 Zn(2)-C6 fungal-type DNA-binding domain 2er8A00
2ER8A 1ZMEC 2HAPC 3ALCA 1F5EP 1QP9A 2EREA 1D66A 1F4SP 1HWTC 1AW6A 1PYIA 2ALCA 1PYCA 1AJYA 2ERGA 3COQA
chains in the Genus database with same CATH superfamily
2ER8A 1ZMEC 2HAPC 3ALCA 1F5EP 1QP9A 2EREA 1D66A 1F4SP 1HWTC 1AW6A 1PYIA 2ALCA 1PYCA 1AJYA 2ERGA 3COQA
chains in the Genus database with same CATH topology
2ER8A 1ZMEC 2HAPC 3ALCA 1F5EP 1QP9A 2EREA 1D66A 1F4SP 1HWTC 1AW6A 1PYIA 2ALCA 1PYCA 1AJYA 2ERGA 3COQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ER8 A;  1ZME C;  2HAP C;  3ALC A;  1F5E P;  1QP9 A;  2ERE A;  1D66 A;  1F4S P;  1HWT C;  1AW6 A;  1PYI A;  2ALC A;  1PYC A;  1AJY A;  2ERG A;  3COQ A; 
#chains in the Genus database with same CATH topology
 2ER8 A;  1ZME C;  2HAP C;  3ALC A;  1F5E P;  1QP9 A;  2ERE A;  1D66 A;  1F4S P;  1HWT C;  1AW6 A;  1PYI A;  2ALC A;  1PYC A;  1AJY A;  2ERG A;  3COQ A; 
#chains in the Genus database with same CATH homology
 2ER8 A;  1ZME C;  2HAP C;  3ALC A;  1F5E P;  1QP9 A;  2ERE A;  1D66 A;  1F4S P;  1HWT C;  1AW6 A;  1PYI A;  2ALC A;  1PYC A;  1AJY A;  2ERG A;  3COQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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