2ETDA

Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 a resolution
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
151
structure length
129
Chain Sequence
HHLVSLEQEVQEYSQIQNQLQRRADLIPNLVETVGYAAHEEILEEIANARALIGATPQESAQADAELSSALSRLLAIAENYPNLADANFRQLMDELAGTENRIAVARRDYNEAVYNTAIGFEEQYFEAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords lemA protein
publication title Crystal structure of LEMA protein (tm0961) from THERMOTOGA MARITIMA at 2.28 A resolution
rcsb
source organism Thermotoga maritima
total genus 47
structure length 129
sequence length 151
ec nomenclature
pdb deposition date 2005-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04011 LemA LemA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.20 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) LemA-like domain 2etdA00
2ETDA
chains in the Genus database with same CATH superfamily
3SDJA 2RLDA 1YO7A 4GXTA 3Q8DA 2K19A 4I1TA 2JBWA 3IAS1 4G75A 3KP9A 3FNBA 3JSBA 3FBVA 4G76A 4PL4A 3FVVA 1JQOA 3L0IA 4YZ9A 4NV5A 2F6MB 3UITA 4O1PA 2JAEA 1W3SA 4U6RA 4YZDA 2JB2A 2BL8A 4PL3A 2JB1A 2XTQA 5LNK1 2FU2A 2KKMA 2XTRA 4DWLA 2A2CA 4HEA1 3B55A 2IP6A 2MJFB 3DA3A 3LJ0A 2RIOA 2YFBA 2V1CC 3F4MA 1TDPA 1SJ8A 2F66B 4OAVB 2XMXA 2BL7A 2QGMA 4JCVE 2JB3A 2E8GA 2L1LB 3VA9A 2QSBA 2A2DA 2RADA 3AJFA 4O1OA 4OAUC 3DA4A 2CAZB 2ZW3A 2P22B 4Z7HA 2YFAA 2ZRRA 4Q9VA 3LJ1A 2FEFA 2QZGA 2GSCA 2HGKA 3LJ2A 2V6EA 4NV2A 4AS3A 5HGIA 2FUG1 3I9V1 3IAM1 2ETDA 4HFVA 4AS2A 4Z7GA 3P23A 4YZCA 3DO9A 1U5KA 4PL5A
chains in the Genus database with same CATH topology
2ETDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ETD A; 
#chains in the Genus database with same CATH topology
 3SDJ A;  2RLD A;  1YO7 A;  4GXT A;  3Q8D A;  2K19 A;  4I1T A;  2JBW A;  3IAS 1;  4G75 A;  3KP9 A;  3FNB A;  3JSB A;  3FBV A;  4G76 A;  4PL4 A;  3FVV A;  1JQO A;  3L0I A;  4YZ9 A;  4NV5 A;  2F6M B;  3UIT A;  4O1P A;  2JAE A;  1W3S A;  4U6R A;  4YZD A;  2JB2 A;  2BL8 A;  4PL3 A;  2JB1 A;  2XTQ A;  5LNK 1;  2FU2 A;  2KKM A;  2XTR A;  4DWL A;  2A2C A;  4HEA 1;  3B55 A;  2IP6 A;  2MJF B;  3DA3 A;  3LJ0 A;  2RIO A;  2YFB A;  2V1C C;  3F4M A;  1TDP A;  1SJ8 A;  2F66 B;  4OAV B;  2XMX A;  2BL7 A;  2QGM A;  4JCV E;  2JB3 A;  2E8G A;  2L1L B;  3VA9 A;  2QSB A;  2A2D A;  2RAD A;  3AJF A;  4O1O A;  4OAU C;  3DA4 A;  2CAZ B;  2ZW3 A;  2P22 B;  4Z7H A;  2YFA A;  2ZRR A;  4Q9V A;  3LJ1 A;  2FEF A;  2QZG A;  2GSC A;  2HGK A;  3LJ2 A;  2V6E A;  4NV2 A;  4AS3 A;  5HGI A;  2FUG 1;  3I9V 1;  3IAM 1;  2ETD A;  4HFV A;  4AS2 A;  4Z7G A;  3P23 A;  4YZC A;  3DO9 A;  1U5K A;  4PL5 A; 
#chains in the Genus database with same CATH homology
 2ETD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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