2EXRA

X-ray structure of cytokinin oxidase/dehydrogenase (ckx) from arabidopsis thaliana at5g21482
Total Genus 152
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
152
sequence length
491
structure length
491
Chain Sequence
b'LNIQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAMAEGGLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNESSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMAILSPGQKIFNRSL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Cytokinin dehydrogenase 7
publication title Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Oxidoreductase
total genus 152
structure length 491
sequence length 491
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2005-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2exrA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2exrA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 2exrA03
3D2JA 3ETRB 4MLAA 5FXDA 4O95A 2VFUA 1W1RA 4PVHA 1MBTA 4HG0A 2W3SA 2RK5A 3FW7A 5HHZA 2VFVA 2W3RA 2W55A 3LLBA 3NVWB 4JB1A 4XLOA 2GQUA 3FW9A 2GQTA 3W8ZA 1E8FA 1N5XA 1FFVC 1AHVA 1UXYA 1W1JA 2PLSA 3NVZB 1E0YA 4PWBA 3TX1A 2NQWA 3DQ0A 1W1MA 3W8XA 2BVGA 3EUB3 4OALA 2MBRA 2BVFA 3S1FA 1QLUA 4EC3A 2Q4WA 5HQXA 3BW7A 3TSHA 1HSKA 3TSJA 1N63C 4UD8A 3S1CA 4PVKA 1QLTA 1W1LA 1FO4A 2P3HA 3W8WA 1AHUA 4ML8A 1E8HA 1MBBA 2I0KA 3GSYA 4PZFA 1WYGA 1FFUC 2O3GA 1ZR6A 1FIQB 1W1QA 1W1KA 3VTEA 2R2ZA 1AHZA 1ZXIC 2PLIA 4BC9A 5FXPA 1F0XA 2BVHA 5FXFA 3I99A 4JAYA 3NVVB 3DEDA 2Q85A 3KJMA 5G5GB 3NS1B 1N5WC 3B9JB 3SR6B 2QPMA 3FWAA 5HMRA 4BC7A 3S1EA 4PYTA 5FXEA 2P13A 5D79A 3LAEA 1N61C 4ZOHB 1RM6B 3JS8A 3AM9A 1DIIA 1W1OA 3PM9A 5ADZA 3NRZB 3S1DA 1I19A 4PVJA 1SB3B 2E3TA 2OAIA 2AXRA 1E8GA 1WVFA 2VFTA 2YVSA 2VFRA 3FW8A 5AE3A 1N60C 2W54A 1DIQA 1N62C 2EXRA 2VFSA 3AN1A 1WVEA 4DNSA 3D2HA 2VAOA 2QKNA 1DZNA 1V97A 5AE2A 1JROA 1JRPA 1VDVA 3D2DA 3AMZA 4PVEA 5AE1A 2R8DA 3C0PA 1W1SA 3HRDC 3NVYB 2P4PA 5G5HB 4BBYA 4PWCA 1VAOA 1T3QC 4BCAA
chains in the Genus database with same CATH superfamily
3D2JA 3ETRB 4MLAA 5FXDA 4O95A 2VFUA 1W1RA 4PVHA 1MBTA 4HG0A 2W3SA 2RK5A 3FW7A 5HHZA 2VFVA 2W3RA 2W55A 3LLBA 3NVWB 4JB1A 4XLOA 2GQUA 3FW9A 2GQTA 3W8ZA 1E8FA 1N5XA 1FFVC 3HSUA 1AHVA 1UXYA 1W1JA 2PLSA 3NVZB 1E0YA 4PWBA 3TX1A 2NQWA 3DQ0A 3RJAA 1W1MA 3W8XA 2BVGA 3EUB3 4OALA 2MBRA 2BVFA 3S1FA 1QLUA 4EC3A 2Q4WA 5HQXA 3BW7A 3TSHA 1HSKA 3TSJA 1N63C 4UD8A 3S1CA 4PVKA 1QLTA 2IPIA 1W1LA 1FO4A 2P3HA 3W8WA 1AHUA 4ML8A 1E8HA 1MBBA 5I1VA 5L6FA 2I0KA 3GSYA 2Y08A 4PZFA 1WYGA 1FFUC 2O3GA 1ZR6A 1FIQB 1W1QA 1W1KA 3VTEA 2R2ZA 5K8EA 1AHZA 1ZXIC 2PLIA 5L6GA 4BC9A 5FXPA 1F0XA 2BVHA 5FXFA 3I99A 4JAYA 3NVVB 3DEDA 2Q85A 3KJMA 5G5GB 2Y4GA 3NS1B 1N5WC 3B9JB 3SR6B 2QPMA 3FWAA 5HMRA 4BC7A 3S1EA 4PYTA 5FXEA 2P13A 5D79A 3LAEA 1N61C 4ZOHB 1RM6B 3JS8A 3RJ8A 3AM9A 1DIIA 1W1OA 3PM9A 2UUVA 5ADZA 3PQBA 3NRZB 3S1DA 1I19A 4PVJA 1SB3B 3EJBB 2E3TA 2UUUA 5I1WA 2OAIA 2AXRA 1E8GA 1WVFA 2VFTA 3EJDB 2YVSA 2VFRA 3FW8A 5AE3A 2Y3RA 1N60C 2W54A 1DIQA 5AWVA 1N62C 2EXRA 2VFSA 3AN1A 1WVEA 4DNSA 3D2HA 2VAOA 2QKNA 1DZNA 1V97A 5AE2A 2WDWA 1JROA 3POPA 1JRPA 1VDVA 3D2DA 3AMZA 4PVEA 5AE1A 2R8DA 3C0PA 1W1SA 3EJEB 3NVYB 3HRDC 2P4PA 5G5HB 4BBYA 4PWCA 2Y3SA 1VAOA 1T3QC 4BCAA
chains in the Genus database with same CATH topology
3D2JA 3ETRB 4MLAA 5FXDA 4O95A 2VFUA 1W1RA 4PVHA 1MBTA 4HG0A 2W3SA 2RK5A 3FW7A 5HHZA 2VFVA 2W3RA 2W55A 3LLBA 3NVWB 4JB1A 4XLOA 2GQUA 3FW9A 2GQTA 3W8ZA 1E8FA 1N5XA 1FFVC 3HSUA 1AHVA 1UXYA 1W1JA 2PLSA 3NVZB 1E0YA 4PWBA 3TX1A 2NQWA 3DQ0A 3RJAA 1W1MA 3W8XA 2BVGA 3EUB3 4OALA 2MBRA 2BVFA 3S1FA 1QLUA 4EC3A 2Q4WA 5HQXA 3BW7A 3TSHA 1HSKA 3TSJA 1N63C 4UD8A 3S1CA 4PVKA 1QLTA 2IPIA 1W1LA 1FO4A 2P3HA 3W8WA 1AHUA 4ML8A 1E8HA 1MBBA 5I1VA 5L6FA 2I0KA 3GSYA 2Y08A 4PZFA 1WYGA 1FFUC 2O3GA 1ZR6A 1FIQB 1W1QA 1W1KA 3VTEA 2R2ZA 5K8EA 1AHZA 1ZXIC 2PLIA 5L6GA 4BC9A 5FXPA 1F0XA 2BVHA 5FXFA 3I99A 4JAYA 3NVVB 3DEDA 2Q85A 3KJMA 5G5GB 2Y4GA 3NS1B 1N5WC 3B9JB 3SR6B 2QPMA 3FWAA 5HMRA 4BC7A 3S1EA 4PYTA 5FXEA 2P13A 5D79A 3LAEA 1N61C 4ZOHB 1RM6B 3JS8A 3RJ8A 3AM9A 1DIIA 1W1OA 3PM9A 2UUVA 5ADZA 3PQBA 3NRZB 3S1DA 1I19A 4PVJA 1SB3B 2E3TA 2UUUA 5I1WA 2OAIA 2AXRA 1E8GA 1WVFA 2VFTA 2YVSA 2VFRA 3FW8A 5AE3A 2Y3RA 1N60C 2W54A 1DIQA 5AWVA 1N62C 2EXRA 2VFSA 3AN1A 1WVEA 4DNSA 3D2HA 2VAOA 2QKNA 1DZNA 1V97A 5AE2A 2WDWA 1JROA 3POPA 1JRPA 1VDVA 3D2DA 3AMZA 4PVEA 5AE1A 2R8DA 3C0PA 1W1SA 3HRDC 3NVYB 2P4PA 5G5HB 4BBYA 4PWCA 2Y3SA 1VAOA 1T3QC 4BCAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D2J A;  3ETR B;  4MLA A;  5FXD A;  4O95 A;  2VFU A;  1W1R A;  4PVH A;  1MBT A;  4HG0 A;  2W3S A;  2RK5 A;  3FW7 A;  5HHZ A;  2VFV A;  2W3R A;  2W55 A;  3LLB A;  3NVW B;  4JB1 A;  4XLO A;  2GQU A;  3FW9 A;  2GQT A;  3W8Z A;  1E8F A;  1N5X A;  1FFV C;  1AHV A;  1UXY A;  1W1J A;  2PLS A;  3NVZ B;  1E0Y A;  4PWB A;  3TX1 A;  2NQW A;  3DQ0 A;  1W1M A;  3W8X A;  2BVG A;  3EUB 3;  4OAL A;  2MBR A;  2BVF A;  3S1F A;  1QLU A;  4EC3 A;  2Q4W A;  5HQX A;  3BW7 A;  3TSH A;  1HSK A;  3TSJ A;  1N63 C;  4UD8 A;  3S1C A;  4PVK A;  1QLT A;  1W1L A;  1FO4 A;  2P3H A;  3W8W A;  1AHU A;  4ML8 A;  1E8H A;  1MBB A;  2I0K A;  3GSY A;  4PZF A;  1WYG A;  1FFU C;  2O3G A;  1ZR6 A;  1FIQ B;  1W1Q A;  1W1K A;  3VTE A;  2R2Z A;  1AHZ A;  1ZXI C;  2PLI A;  4BC9 A;  5FXP A;  1F0X A;  2BVH A;  5FXF A;  3I99 A;  4JAY A;  3NVV B;  3DED A;  2Q85 A;  3KJM A;  5G5G B;  3NS1 B;  1N5W C;  3B9J B;  3SR6 B;  2QPM A;  3FWA A;  5HMR A;  4BC7 A;  3S1E A;  4PYT A;  5FXE A;  2P13 A;  5D79 A;  3LAE A;  1N61 C;  4ZOH B;  1RM6 B;  3JS8 A;  3AM9 A;  1DII A;  1W1O A;  3PM9 A;  5ADZ A;  3NRZ B;  3S1D A;  1I19 A;  4PVJ A;  1SB3 B;  2E3T A;  2OAI A;  2AXR A;  1E8G A;  1WVF A;  2VFT A;  2YVS A;  2VFR A;  3FW8 A;  5AE3 A;  1N60 C;  2W54 A;  1DIQ A;  1N62 C;  2EXR A;  2VFS A;  3AN1 A;  1WVE A;  4DNS A;  3D2H A;  2VAO A;  2QKN A;  1DZN A;  1V97 A;  5AE2 A;  1JRO A;  1JRP A;  1VDV A;  3D2D A;  3AMZ A;  4PVE A;  5AE1 A;  2R8D A;  3C0P A;  1W1S A;  3HRD C;  3NVY B;  2P4P A;  5G5H B;  4BBY A;  4PWC A;  1VAO A;  1T3Q C;  4BCA A; 
#chains in the Genus database with same CATH topology
 3D2J A;  3ETR B;  4MLA A;  5FXD A;  4O95 A;  2VFU A;  1W1R A;  4PVH A;  1MBT A;  4HG0 A;  2W3S A;  2RK5 A;  3FW7 A;  5HHZ A;  2VFV A;  2W3R A;  2W55 A;  3LLB A;  3NVW B;  4JB1 A;  4XLO A;  2GQU A;  3FW9 A;  2GQT A;  3W8Z A;  1E8F A;  1N5X A;  1FFV C;  3HSU A;  1AHV A;  1UXY A;  1W1J A;  2PLS A;  3NVZ B;  1E0Y A;  4PWB A;  3TX1 A;  2NQW A;  3DQ0 A;  3RJA A;  1W1M A;  3W8X A;  2BVG A;  3EUB 3;  4OAL A;  2MBR A;  2BVF A;  3S1F A;  1QLU A;  4EC3 A;  2Q4W A;  5HQX A;  3BW7 A;  3TSH A;  1HSK A;  3TSJ A;  1N63 C;  4UD8 A;  3S1C A;  4PVK A;  1QLT A;  2IPI A;  1W1L A;  1FO4 A;  2P3H A;  3W8W A;  1AHU A;  4ML8 A;  1E8H A;  1MBB A;  5I1V A;  5L6F A;  2I0K A;  3GSY A;  2Y08 A;  4PZF A;  1WYG A;  1FFU C;  2O3G A;  1ZR6 A;  1FIQ B;  1W1Q A;  1W1K A;  3VTE A;  2R2Z A;  5K8E A;  1AHZ A;  1ZXI C;  2PLI A;  5L6G A;  4BC9 A;  5FXP A;  1F0X A;  2BVH A;  5FXF A;  3I99 A;  4JAY A;  3NVV B;  3DED A;  2Q85 A;  3KJM A;  5G5G B;  2Y4G A;  3NS1 B;  1N5W C;  3B9J B;  3SR6 B;  2QPM A;  3FWA A;  5HMR A;  4BC7 A;  3S1E A;  4PYT A;  5FXE A;  2P13 A;  5D79 A;  3LAE A;  1N61 C;  4ZOH B;  1RM6 B;  3JS8 A;  3RJ8 A;  3AM9 A;  1DII A;  1W1O A;  3PM9 A;  2UUV A;  5ADZ A;  3PQB A;  3NRZ B;  3S1D A;  1I19 A;  4PVJ A;  1SB3 B;  3EJB B;  2E3T A;  2UUU A;  5I1W A;  2OAI A;  2AXR A;  1E8G A;  1WVF A;  2VFT A;  3EJD B;  2YVS A;  2VFR A;  3FW8 A;  5AE3 A;  2Y3R A;  1N60 C;  2W54 A;  1DIQ A;  5AWV A;  1N62 C;  2EXR A;  2VFS A;  3AN1 A;  1WVE A;  4DNS A;  3D2H A;  2VAO A;  2QKN A;  1DZN A;  1V97 A;  5AE2 A;  2WDW A;  1JRO A;  3POP A;  1JRP A;  1VDV A;  3D2D A;  3AMZ A;  4PVE A;  5AE1 A;  2R8D A;  3C0P A;  1W1S A;  3EJE B;  3NVY B;  3HRD C;  2P4P A;  5G5H B;  4BBY A;  4PWC A;  2Y3S A;  1VAO A;  1T3Q C;  4BCA A; 
#chains in the Genus database with same CATH homology
 3D2J A;  3ETR B;  4MLA A;  5FXD A;  4O95 A;  2VFU A;  1W1R A;  4PVH A;  1MBT A;  4HG0 A;  2W3S A;  2RK5 A;  3FW7 A;  5HHZ A;  2VFV A;  2W3R A;  2W55 A;  3LLB A;  3NVW B;  4JB1 A;  4XLO A;  2GQU A;  3FW9 A;  2GQT A;  3W8Z A;  1E8F A;  1N5X A;  1FFV C;  3HSU A;  1AHV A;  1UXY A;  1W1J A;  2PLS A;  3NVZ B;  1E0Y A;  4PWB A;  3TX1 A;  2NQW A;  3DQ0 A;  3RJA A;  1W1M A;  3W8X A;  2BVG A;  3EUB 3;  4OAL A;  2MBR A;  2BVF A;  3S1F A;  1QLU A;  4EC3 A;  2Q4W A;  5HQX A;  3BW7 A;  3TSH A;  1HSK A;  3TSJ A;  1N63 C;  4UD8 A;  3S1C A;  4PVK A;  1QLT A;  2IPI A;  1W1L A;  1FO4 A;  2P3H A;  3W8W A;  1AHU A;  4ML8 A;  1E8H A;  1MBB A;  5I1V A;  5L6F A;  2I0K A;  3GSY A;  2Y08 A;  4PZF A;  1WYG A;  1FFU C;  2O3G A;  1ZR6 A;  1FIQ B;  1W1Q A;  1W1K A;  3VTE A;  2R2Z A;  5K8E A;  1AHZ A;  1ZXI C;  2PLI A;  5L6G A;  4BC9 A;  5FXP A;  1F0X A;  2BVH A;  5FXF A;  3I99 A;  4JAY A;  3NVV B;  3DED A;  2Q85 A;  3KJM A;  5G5G B;  2Y4G A;  3NS1 B;  1N5W C;  3B9J B;  3SR6 B;  2QPM A;  3FWA A;  5HMR A;  4BC7 A;  3S1E A;  4PYT A;  5FXE A;  2P13 A;  5D79 A;  3LAE A;  1N61 C;  4ZOH B;  1RM6 B;  3JS8 A;  3RJ8 A;  3AM9 A;  1DII A;  1W1O A;  3PM9 A;  2UUV A;  5ADZ A;  3PQB A;  3NRZ B;  3S1D A;  1I19 A;  4PVJ A;  1SB3 B;  2E3T A;  2UUU A;  5I1W A;  2OAI A;  2AXR A;  1E8G A;  1WVF A;  2VFT A;  2YVS A;  2VFR A;  3FW8 A;  5AE3 A;  2Y3R A;  1N60 C;  2W54 A;  1DIQ A;  5AWV A;  1N62 C;  2EXR A;  2VFS A;  3AN1 A;  1WVE A;  4DNS A;  3D2H A;  2VAO A;  2QKN A;  1DZN A;  1V97 A;  5AE2 A;  2WDW A;  1JRO A;  3POP A;  1JRP A;  1VDV A;  3D2D A;  3AMZ A;  4PVE A;  5AE1 A;  2R8D A;  3C0P A;  1W1S A;  3HRD C;  3NVY B;  2P4P A;  5G5H B;  4BBY A;  4PWC A;  2Y3S A;  1VAO A;  1T3Q C;  4BCA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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