2EYDA

Water refined solution structure of crambin in dpc micelles
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
46
structure length
46
Chain Sequence
TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords CRAMBIN
publication title Three-dimensional structure of the water-insoluble protein crambin in dodecylphosphocholine micelles and its minimal solvent-exposed surface.
pubmed doi rcsb
source organism Crambe hispanica subsp. abyssinica
total genus 10
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2005-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 2eydA00
2FD9A 1CXRA 4FC1A 3SZSA 1CCNA 1JXTA 1JMPA 2EYCA 1BHPA 1ORLA 2V9BA 1EJGA 1JXXA 1ED0A 1JXYA 1YV8A 3U7TA 1CBNA 1JMNA 1JXWA 3NIRA 2PLHA 2EYDA 1OKHA 1NBLA 2FD7A 1CNRA 1AB1A 3UE7B 1CRNA 2EYAA 1JXUA 1CCMA 3C8PA 2EYBA 1WUWA 1YVAA
chains in the Genus database with same CATH superfamily
1IJGA 1H5WA 2FD9A 1CXRA 4FC1A 3SZSA 1CCNA 1JXTA 1JMPA 2EYCA 1BHPA 2V9BA 1EJGA 1JXXA 1ED0A 1JXYA 1YV8A 3U7TA 1CBNA 1YVAA 1JXWA 3NIRA 2PLHA 1JMNA 2EYDA 1FOUA 1OKHA 1NBLA 1JNBA 2FD7A 1CNRA 1AB1A 3UE7B 1CRNA 2EYAA 1JXUA 1CCMA 3C8PA 2EYBA 1WUWA 1ORLA
chains in the Genus database with same CATH topology
2FD9A 1CXRA 4FC1A 3SZSA 1CCNA 1JXTA 1JMPA 2EYCA 1BHPA 1ORLA 2V9BA 1EJGA 1JXXA 1ED0A 1JXYA 1YV8A 3U7TA 1CBNA 1JMNA 1JXWA 3NIRA 2PLHA 2EYDA 1OKHA 1NBLA 2FD7A 1CNRA 1AB1A 3UE7B 1CRNA 2EYAA 1JXUA 1CCMA 3C8PA 2EYBA 1WUWA 1YVAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FD9 A;  1CXR A;  4FC1 A;  3SZS A;  1CCN A;  1JXT A;  1JMP A;  2EYC A;  1BHP A;  1ORL A;  2V9B A;  1EJG A;  1JXX A;  1ED0 A;  1JXY A;  1YV8 A;  3U7T A;  1CBN A;  1JMN A;  1JXW A;  3NIR A;  2PLH A;  2EYD A;  1OKH A;  1NBL A;  2FD7 A;  1CNR A;  1AB1 A;  3UE7 B;  1CRN A;  2EYA A;  1JXU A;  1CCM A;  3C8P A;  2EYB A;  1WUW A;  1YVA A; 
#chains in the Genus database with same CATH topology
 1IJG A;  1H5W A;  2FD9 A;  1CXR A;  4FC1 A;  3SZS A;  1CCN A;  1JXT A;  1JMP A;  2EYC A;  1BHP A;  2V9B A;  1EJG A;  1JXX A;  1ED0 A;  1JXY A;  1YV8 A;  3U7T A;  1CBN A;  1YVA A;  1JXW A;  3NIR A;  2PLH A;  1JMN A;  2EYD A;  1FOU A;  1OKH A;  1NBL A;  1JNB A;  2FD7 A;  1CNR A;  1AB1 A;  3UE7 B;  1CRN A;  2EYA A;  1JXU A;  1CCM A;  3C8P A;  2EYB A;  1WUW A;  1ORL A; 
#chains in the Genus database with same CATH homology
 2FD9 A;  1CXR A;  4FC1 A;  3SZS A;  1CCN A;  1JXT A;  1JMP A;  2EYC A;  1BHP A;  1ORL A;  2V9B A;  1EJG A;  1JXX A;  1ED0 A;  1JXY A;  1YV8 A;  3U7T A;  1CBN A;  1JMN A;  1JXW A;  3NIR A;  2PLH A;  2EYD A;  1OKH A;  1NBL A;  2FD7 A;  1CNR A;  1AB1 A;  3UE7 B;  1CRN A;  2EYA A;  1JXU A;  1CCM A;  3C8P A;  2EYB A;  1WUW A;  1YVA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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