2F05A

Solution structure of free pah2 domain of msin3b
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
85
structure length
85
Chain Sequence
ESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription repressor
molecule keywords Paired amphipathic helix protein Sin3b
publication title Role of Structural and Dynamical Plasticity in Sin3: The Free PAH2 Domain is a Folded Module in mSin3B
pubmed doi rcsb
source organism Mus musculus
total genus 28
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2005-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02671 PAH Paired amphipathic helix repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1160.11 Mainly Alpha Up-down Bundle Paired amphipathic helix 2 (pah2 repeat) Paired amphipathic helix 2f05A00
2RMSA 2CZYA 1PD7A 1E91A 1S5RB 1S5QB 2CR7A 2L9SB 2LD7B 2F05A 1G1EB 2RMRA
chains in the Genus database with same CATH superfamily
1E91A 2KBRA 2KBQA 2L9SB 2CR7A 2LD7B 4FQNA 2CZYA 4Y5OA 4YKCA 1S5RB 2RMRA 1PD7A 4YKDA 4YL6A 1S5QB 3K1RA 1G1EB 5F3XA 2RMSA 2LSRA 2F05A
chains in the Genus database with same CATH topology
2RMSA 2CZYA 1PD7A 1E91A 1S5RB 1S5QB 2CR7A 2L9SB 2LD7B 2F05A 1G1EB 2RMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RMS A;  2CZY A;  1PD7 A;  1E91 A;  1S5R B;  1S5Q B;  2CR7 A;  2L9S B;  2LD7 B;  2F05 A;  1G1E B;  2RMR A; 
#chains in the Genus database with same CATH topology
 1E91 A;  2KBR A;  2KBQ A;  2L9S B;  2CR7 A;  2LD7 B;  4FQN A;  2CZY A;  4Y5O A;  4YKC A;  1S5R B;  2RMR A;  1PD7 A;  4YKD A;  4YL6 A;  1S5Q B;  3K1R A;  1G1E B;  5F3X A;  2RMS A;  2LSR A;  2F05 A; 
#chains in the Genus database with same CATH homology
 2RMS A;  2CZY A;  1PD7 A;  1E91 A;  1S5R B;  1S5Q B;  2CR7 A;  2L9S B;  2LD7 B;  2F05 A;  1G1E B;  2RMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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